|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008808 ID=TCONS_00008808|Name=TCONS_00008808|organism=Clytia hemisphaerica|type=transcript|length=1117bp
tgatGCATAAGttgccatttttacaaattttggcgttattaacggtccta
attggcgtaagcccaaaattaggctgtagCGTAAtgagggccggcgtaaa
aaggaccgATAAGGTAACAAAAAGAGGTCGTAGAGAATGTACAGAAAAGT
TTGTACACTGATAAAGTATCGATTGAGAAATATAAACGTTATATTCATCT
AGAAAAAGAAACGACAAAAACAACGGAACAAAATTATTTCTATAAAAATG
GTAACCAAAATATCGAGAAAATAACGAAACAAAAATCTAATCTCTAATCT
acaaaaatgttataaatattatCTACTCCTCTAGATTTTACAGACCAATT
TCTATAAACTTGCACGAAATATTCAGTCTTTTTTATTCTCAAATAATTCT
ATGAGAAAAATCAAATCTCAAGGCTTTTTCTTGTCCCGTAGACTTTAAAA
TCAATGGGCCAAAAATGAGAACGGCCGATCCTCGAAAAAAGTGATTTTAC
CAAAGTCTAGATACTAGATTCTTGGCATGTTGTTTGAAAAAGTCATCAGG
TTTTGATTCAACAGTGACCcaaaaagaaacttttggtaaattttgtcTAG
ATTGCCAAATCTAAACCAACTGAGTTGTTACATATAGTATTGGTTGTAAA
ATGCATACCCCTGACCAAGAATATCTAATGAATTATCATATATATGAAAA
ATTGCGTCGACTAATATTCCTCAAATAAGAGATNCCACAAATATCTAATG
AATTATCATATATGAAAAATTGCGTCGACTAATATTCCTCAAATaatagg
aaatatttttttaaaccctATCCGCGTGCCAATCAATCTGATTGGTCAAA
TCACGAAAATATGATGAAATTAACCGGGCTGAGTTAAACTAACAAAAAAT
TCCCCGTTCTAGATAGCAGTCAGTAAAATTAACCTTTGATGAGAATTTTT
AAATCGATAGCGTTTTTGTTAAAGTTGAAAAGATAATATTGAGTGGGATT
Ttccatagtttgcaccccccctttttaatagggggggatgctaactttct
ggagggcctttgtagggggggtaccgagatctgccgaaaaaactaggggg
gatgggaatgtaggggg Run BLAST on NCBI transcript from alignment at sc0000087:263785..264901 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00008808 ID=TCONS_00008808|Name=TCONS_00008808|organism=Clytia hemisphaerica|type=transcript|length=1117bp|location=Sequence derived from alignment at sc0000087:263785..264901 (Clytia hemisphaerica)
ccccctacattcccatcccccctagttttttcggcagatctcggtacccc
ccctacaaaggccctccagaaagttagcatccccccctattaaaaagggg
gggtgcaaactatggaAAATCCCACTCAATATTATCTTTTCAACTTTAAC
AAAAACGCTATCGATTTAAAAATTCTCATCAAAGGTTAATTTTACTGACT
GCTATCTAGAACGGGGAATTTTTTGTTAGTTTAACTCAGCCCGGTTAATT
TCATCATATTTTCGTGATTTGACCAATCAGATTGATTGGCACGCGGATag
ggtttaaaaaaatatttcctattATTTGAGGAATATTAGTCGACGCAATT
TTTCATATATGATAATTCATTAGATATTTGTGGNATCTCTTATTTGAGGA
ATATTAGTCGACGCAATTTTTCATATATATGATAATTCATTAGATATTCT
TGGTCAGGGGTATGCATTTTACAACCAATACTATATGTAACAACTCAGTT
GGTTTAGATTTGGCAATCTAgacaaaatttaccaaaagtttctttttgGG
TCACTGTTGAATCAAAACCTGATGACTTTTTCAAACAACATGCCAAGAAT
CTAGTATCTAGACTTTGGTAAAATCACTTTTTTCGAGGATCGGCCGTTCT
CATTTTTGGCCCATTGATTTTAAAGTCTACGGGACAAGAAAAAGCCTTGA
GATTTGATTTTTCTCATAGAATTATTTGAGAATAAAAAAGACTGAATATT
TCGTGCAAGTTTATAGAAATTGGTCTGTAAAATCTAGAGGAGTAGataat
atttataacatttttgtAGATTAGAGATTAGATTTTTGTTTCGTTATTTT
CTCGATATTTTGGTTACCATTTTTATAGAAATAATTTTGTTCCGTTGTTT
TTGTCGTTTCTTTTTCTAGATGAATATAACGTTTATATTTCTCAATCGAT
ACTTTATCAGTGTACAAACTTTTCTGTACATTCTCTACGACCTCTTTTTG
TTACCTTATcggtcctttttacgccggccctcaTTACGctacagcctaat
tttgggcttacgccaattaggaccgttaataacgccaaaatttgtaaaaa
tggcaaCTTATGCatca
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00008808-exon-sc0000087-1491911889:263785..264901 | TCONS_00008808-exon-sc0000087-1491911889:263785..264901 | Clytia hemisphaerica | exon |
| TCONS_00008808-exon-sc0000087-1510915933:263785..264901 | TCONS_00008808-exon-sc0000087-1510915933:263785..264901 | Clytia hemisphaerica | exon |
| TCONS_00008808-exon-sc0000087-1575043694:263785..264901 | TCONS_00008808-exon-sc0000087-1575043694:263785..264901 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000087 | supercontig | sc0000087:263785..264901 . |
Blast
The following BLAST results are available for this feature:
|
