TCONS_00008759 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008759
Unique NameTCONS_00008759
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1344

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008759 ID=TCONS_00008759|Name=TCONS_00008759|organism=Clytia hemisphaerica|type=transcript|length=1344bp
atcatccgcacatacccagcatctGTTTATGTTTTTTAAGTACCCCTTCG
GGATTCCTTCCctatttttcctcatttttctatgtcttttttatttttca
gattttaaataataaaaaaaaagaaacaatattATGAAATCCAGAATCTG
GTTTATGCTTTTTGGACTTGCATCTACTGTCGCCCTCTTGGTGAACAAGT
ATGTCCTCTGGAAATTGAAATTCACTTATCCAACAGTCTATCAAAGCTGG
CAAATGTCTTTCGCATCTGTGATGTTCTTCTCGGCTCACATGTTTGGTAA
AATGCCTTCCAAAGCTTTAAATAGTGGAATTATTTATCCCTGGTTTCCAG
CCATACTTCTTTTCTCTACCAGTATTTATAGTGGTTCAGTAAGTCTATCA
CGGCTGCCTATccctgtttttttatttttgcaacaAGGGGTTTTACAAAG
CATAATAGTATTGatgaaatttcaacaacaaaatggACCTGAAAAGTTGG
TATCCCTTTTAATGAATTCAAAGAAAGGTTTATTAATGATAGTTAATTGT
TTTTGTATTGTTGGCATAATTTTTCTAATGAAAACTGAACTGGTATTCAA
TTTTAAGTGGATGTTGATACACTGTATAGCAAGTTGCAGTTATTCGGTGT
TTGCCATCAGACATCAACATTTAGAACTTCAAGAATCGGATAAACTTCTG
ATCAACTCTATATTCAGCATAATAGTGTTGTTAACAGTTGGCATGACTAC
TGGGGAAACGAGCGTCGTCTTTAAATTTCCGTTTTTATATCACCGTATAT
TTTTGTTGGCTTGTCTTTGTAGTGGAGTATTTGGTGCACTTCTTATGGTC
AGTTATTCTAAGCTATGTAGCGAACTCAAGATCGAAAAAGTACGATTTGG
GAATACTATAATCATGTTATGGGTGTCCGGTatatccttttttgtttttg
agaatGAATTGACTGCTCAATTGACATTCTTGGCTTTCTTTGGACTGTGC
TCTACTTGTTACTTGTGTTATTTGATTCAAAATGAATTGCAGCAACAATC
TACACCTATTCCTATAAAGGAAATTGTTATATGATGGTGGTTTtgtaatt
atttctttaaatattAGTTTTTCTATTCAACCCTATTATAGTTTTGCCTA
CTAAAAGAGCCTcgaattcaaattttgactagTTTTTTGACTAGTTTTGC
TCTTCTATCTTTGTAGGTATCCAGTAACTTAGTTTACTATTAAAATTCTT
ATCTTTAAAACTAGATCAGCTATATTGATGGAATTTTCAGGGAATGCTCC
AAATAGGTTATTGGTTGAGTACACCTGTATAGTTTAAAGAGGGG
Run BLAST on NCBI

transcript from alignment at sc0000087:101249..102592-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008759 ID=TCONS_00008759|Name=TCONS_00008759|organism=Clytia hemisphaerica|type=transcript|length=1344bp|location=Sequence derived from alignment at sc0000087:101249..102592- (Clytia hemisphaerica)
ATCATCCGCACATACCCAGCATCTGTTTATGTTTTTTAAGTACCCCTTCG
GGATTCCTTCCCTATTTTTCCTCATTTTTCTATGTCTTTTTTATTTTTCA
GATTTTAAATAATAAAAAAAAAGAAACAATATTATGAAATCCAGAATCTG
GTTTATGCTTTTTGGACTTGCATCTACTGTCGCCCTCTTGGTGAACAAGT
ATGTCCTCTGGAAATTGAAATTCACTTATCCAACAGTCTATCAAAGCTGG
CAAATGTCTTTCGCATCTGTGATGTTCTTCTCGGCTCACATGTTTGGTAA
AATGCCTTCCAAAGCTTTAAATAGTGGAATTATTTATCCCTGGTTTCCAG
CCATACTTCTTTTCTCTACCAGTATTTATAGTGGTTCAGTAAGTCTATCA
CGGCTGCCTATCCCTGTTTTTTTATTTTTGCAACAAGGGGTTTTACAAAG
CATAATAGTATTGATGAAATTTCAACAACAAAATGGACCTGAAAAGTTGG
TATCCCTTTTAATGAATTCAAAGAAAGGTTTATTAATGATAGTTAATTGT
TTTTGTATTGTTGGCATAATTTTTCTAATGAAAACTGAACTGGTATTCAA
TTTTAAGTGGATGTTGATACACTGTATAGCAAGTTGCAGTTATTCGGTGT
TTGCCATCAGACATCAACATTTAGAACTTCAAGAATCGGATAAACTTCTG
ATCAACTCTATATTCAGCATAATAGTGTTGTTAACAGTTGGCATGACTAC
TGGGGAAACGAGCGTCGTCTTTAAATTTCCGTTTTTATATCACCGTATAT
TTTTGTTGGCTTGTCTTTGTAGTGGAGTATTTGGTGCACTTCTTATGGTC
AGTTATTCTAAGCTATGTAGCGAACTCAAGATCGAAAAAGTACGATTTGG
GAATACTATAATCATGTTATGGGTGTCCGGTATATCCTTTTTTGTTTTTG
AGAATGAATTGACTGCTCAATTGACATTCTTGGCTTTCTTTGGACTGTGC
TCTACTTGTTACTTGTGTTATTTGATTCAAAATGAATTGCAGCAACAATC
TACACCTATTCCTATAAAGGAAATTGTTATATGATGGTGGTTTTGTAATT
ATTTCTTTAAATATTAGTTTTTCTATTCAACCCTATTATAGTTTTGCCTA
CTAAAAGAGCCTCGAATTCAAATTTTGACTAGTTTTTTGACTAGTTTTGC
TCTTCTATCTTTGTAGGTATCCAGTAACTTAGTTTACTATTAAAATTCTT
ATCTTTAAAACTAGATCAGCTATATTGATGGAATTTTCAGGGAATGCTCC
AAATAGGTTATTGGTTGAGTACACCTGTATAGTTTAAAGAGGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004909XLOC_004909Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008759-exon-sc0000087-1575043694:101249..102592TCONS_00008759-exon-sc0000087-1575043694:101249..102592Clytia hemisphaericaexon
TCONS_00008759-exon-sc0000087-1510915933:101249..102592TCONS_00008759-exon-sc0000087-1510915933:101249..102592Clytia hemisphaericaexon
TCONS_00008759-exon-sc0000087-1491911889:101249..102592TCONS_00008759-exon-sc0000087-1491911889:101249..102592Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000087supercontigsc0000087:101249..102592 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
10.5323	9.57731	4.39155	3.835	1.73224	1.01158	2.79887	2.65444	0.62979	1.21847	2.58547	1.31917	1.92869	0.864807	1.09856	1.34448	2.11187	1.30214	1.33855	1.72523	1.14836	0.764897	6.69153	6.08206	1.61314	1.80737	3.03542	1.846	3.82723	4.33199
Blast
[Close]
BLAST of TCONS_00008759 vs. Swiss-Prot (Human)
Match: TM241 (Transmembrane protein 241 OS=Homo sapiens GN=TMEM241 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.001e-24
Identity = 82/266 (30.83%), Postives = 124/266 (46.62%), Query Frame = 2 
Query:  188 LVNKYVLWKLKFTYPTVYQSWQMSFASVMFFSAHMFGKMPSKALNSGIIYPWFPAILLFSTSIYSGSVSLSRLPIPVFLFLQQGVLQSIIVLMKFQQQNGPEKLVSLLMNSKKGLLMIVNCFCIVGIIFLMKTELVFN---FKWMLIHCIASCSYSVFAIRHQHLELQESDKLLINSIFSIIVLLTVGMTTGETSVVFKFPFLYHRIFLLACLCSGVFGALLMVSYSKLCSELKIEKVRFGNTIIMLWVSGISFFVFENELTAQLT 976
            L NKYVL  LKFTYPT++Q WQ     ++   +   G +   + +   +  W PA +LF   IY+GS +LSRL IPVFL L      + +++  +Q+    EK     + S   LL    C        L   +  FN   + W +IH +   +Y +     +   L + D+  +N IFS+++L      TG+   V  FPFLY   F  +C  SG  G  LM S  KL + L   +         +  +G+S  +F+  LT+  T
Sbjct:   21 LTNKYVLSVLKFTYPTLFQGWQTLIGGLLLHVSWKLGWVEINSSSRSHVLVWLPASVLFVGIIYAGSRALSRLAIPVFLTLHN---VAEVIICGYQKCFQKEKTSPAKICSALLLLAAAGC--------LPFNDSQFNPDGYFWAIIHLLCVGAYKILQKSQKPSALSDIDQQYLNYIFSVVLLAFASHPTGDLFSVLDFPFLYFYRFHGSCCASGFLGFFLMFSTVKLKNLLAPGQCAAWIFFAKIITAGLSILLFDAILTSATT 275
The following BLAST results are available for this feature:
BLAST of TCONS_00008759 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TM2413.001e-2430.83Transmembrane protein 241 OS=Homo sapiens GN=TMEM2... [more]
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