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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008709 ID=TCONS_00008709|Name=TCONS_00008709|organism=Clytia hemisphaerica|type=transcript|length=958bp
GCTGAACTTAGTTGTCTACACAGCTAAGCTTTTTATGGcATTTGTGTTAA
CGAAAGTCCTTCTCCGGTTCACAGAGACGAAGAAAGGAAGTTCTTTTGGA
CTGAAGAAAGAGAAAAGCTCCTTGTCAGGTCAAAATAATAACGACGAGAG
GGCGAAGATCGACTAATGTGGAATTTGGTGTGACTTTTCTAGTAGTTATT
ATTCGAATGCTATATCGGTAGGTAGTTTTATTGTAAATGCAGTAGTAGCC
TGGATATCTAACAGACTGTAAACTCCTTCTTTATATGTTTTATGTTCGCC
ACATATAGGTCCacagcttggatatccaggcttcAGTATTTGCAGTCATT
TATAATACTTAGACGGAAAATGACAATCCTTTTAGCACTGTTTAGGAGTG
TACTGTTCGATTATATGATATGGACAAAAAGTATACTGGATTGAATTAAA
TTGAAGTTTTCTCAATAATTTCTGAATCTcttctattttcatttttggac
ctcCAGCGGCATAGTCACTTTAAAAGTCAGTGTTCCTGGATACTGTCTAA
GATAGCTGACCATATGCAGAACGGTTTTCAGAAGAGATACGATTAAGTTG
AGTCGGTTCGCTTATGCATGAACCTTTTTTTTCGGGTTTACTATTTTCTG
TTACTTTTTTTTagtttaagttttatttttgtaacAATTTATATAAGAAT
TTCATTTATATGAACTCAGATGAGCTGtcagtaaaattaaaaatgcgAAT
AATTTTTAATACAGTTTGAATTAGATTGCGATTTTGTCCTCTTTGAAGTC
AAgtcaagatgaaaaaaaaaataaagaaaaataacattttcagtttttat
catttttgataTGAGAAAAtccatagtttgcagaggggtatgaacccccc
taggtttatttcatccccccctatatacccatcccccccttttgtaatga
aatcttat Run BLAST on NCBI transcript from alignment at sc0000087:261307..263443+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00008709 ID=TCONS_00008709|Name=TCONS_00008709|organism=Clytia hemisphaerica|type=transcript|length=2137bp|location=Sequence derived from alignment at sc0000087:261307..263443+ (Clytia hemisphaerica)
GCTGAACTTAGTTGTCTACACAGCTAAGCTTTTTATGGGTACTTGATTTC
ATCAATTCACTAATCTATACcttagactagcaaactagtcttttaacaag
aagccggagcggcgtgagggtccagctgacgtggcaataaccgaatgtcg
ttcgtaccgggttccttaagtgatGCAAAAAAATgtccttcccatcctcc
actctgagcttctattctttgacactttctttgtattgctaaTAAGTTAT
TGCtataagttttgaaagtttttgatacatttcccgaaatttcgaaactt
ttgccgctgatgggattcgaacccactatatacaTACAAAGCACCTATAA
TTAGAAcgccatcgccttaaccactcggccatcgagtcacaacttaagga
gttcaaagttgtttataaaaatggtatttactccaaactctacccggggg
ctaaaaccctaaccaggggttaactcccatccccaaccctagccctaacc
ctacctgaccctacctgaaacaNcaggggttaactcccatccccaaccct
agccctaaccctacctgaccctacctgaaacaatcctttaatctaaccgg
gaaatttgactctactaccaattcaatccaaaacataggtcaaacatcgc
gcgggtaggcggggcaaaaattctagatctgcggttggtttagcctggac
ttttcaatttcttgcgcgcacaggccccgacaaagacaaaatcttttcaa
tcagttgctttttaaaggtccattctgctgcgcgctggaccaattaGTTA
TGTCAGAGGGCgtgaacataaaggcggcgggtgTTTTCTAGAATAGCTGC
GTAGaagaacgagcaaaagttggtgagaggctgctgattaactgctttca
gcccttgccgccgataaaatttcttcttccgtttacctaactcctacgct
cacttttcccgcgtgataccgttccagcccgactggcgtgccagtctagt
CTATACCCtcgagaaatttaaaaaaatctcgaTAGGCAATTTTCCGacca
caaaagtttttttttacctaATTCTTTAGTACTTATTATATCAACACATG
TGAGAGAGGGAGAAAGATGCATTTCCATAGTCGACCTGATGGTTCCCTTC
TAGGTCAAATCCAATATCAAAATGCCAAAAGATCACAATTtccatttttc
ctttttttctatttcagcATTTGTGTTAACGAAAGTCCTTCTCCGGTTCA
CAGAGACGAAGAAAGGAAGTTCTTTTGGACTGAAGAAAGAGAAAAGCTCC
TTGTCAGGTCAAAATAATAACGACGAGAGGGCGAAGATCGACTAATGTGG
AATTTGGTGTGACTTTTCTAGTAGTTATTATTCGAATGCTATATCGGTAG
GTAGTTTTATTGTAAATGCAGTAGTAGCCTGGATATCTAACAGACTGTAA
ACTCCTTCTTTATATGTTTTATGTTCGCCACATATAGGTCCacagcttgg
atatccaggcttcAGTATTTGCAGTCATTTATAATACTTAGACGGAAAAT
GACAATCCTTTTAGCACTGTTTAGGAGTGTACTGTTCGATTATATGATAT
GGACAAAAAGTATACTGGATTGAATTAAATTGAAGTTTTCTCAATAATTT
CTGAATCTcttctattttcatttttggacctcCAGCGGCATAGTCACTTT
AAAAGTCAGTGTTCCTGGATACTGTCTAAGATAGCTGACCATATGCAGAA
CGGTTTTCAGAAGAGATACGATTAAGTTGAGTCGGTTCGCTTATGCATGA
ACCTTTTTTTTCGGGTTTACTATTTTCTGTTACTTTTTTTTagtttaagt
tttatttttgtaacAATTTATATAAGAATTTCATTTATATGAACTCAGAT
GAGCTGtcagtaaaattaaaaatgcgAATAATTTTTAATACAGTTTGAAT
TAGATTGCGATTTTGTCCTCTTTGAAGTCAAgtcaagatgaaaaaaaaaa
taaagaaaaataacattttcagtttttatcatttttgataTGAGAAAAtc
catagtttgcagaggggtatgaacccccctaggtttatttcatccccccc
tatatacccatcccccccttttgtaatgaaatcttat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00008709-exon-sc0000087-1491911889:261307..261344 | TCONS_00008709-exon-sc0000087-1491911889:261307..261344 | Clytia hemisphaerica | exon |
| TCONS_00008709-exon-sc0000087-1510915933:261307..261344 | TCONS_00008709-exon-sc0000087-1510915933:261307..261344 | Clytia hemisphaerica | exon |
| TCONS_00008709-exon-sc0000087-1575043694:261307..261344 | TCONS_00008709-exon-sc0000087-1575043694:261307..261344 | Clytia hemisphaerica | exon |
| TCONS_00008709-exon-sc0000087-1491911889:262524..263443 | TCONS_00008709-exon-sc0000087-1491911889:262524..263443 | Clytia hemisphaerica | exon |
| TCONS_00008709-exon-sc0000087-1510915933:262524..263443 | TCONS_00008709-exon-sc0000087-1510915933:262524..263443 | Clytia hemisphaerica | exon |
| TCONS_00008709-exon-sc0000087-1575043694:262524..263443 | TCONS_00008709-exon-sc0000087-1575043694:262524..263443 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000087 | supercontig | sc0000087:261307..263443 + |
Blast
The following BLAST results are available for this feature:
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