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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008697 ID=TCONS_00008697|Name=TCONS_00008697|organism=Clytia hemisphaerica|type=transcript|length=1578bp
AAAAAATCCAGATTTGAATATAGAGATTTGTATAGCATTTGTCCTAGTGA
AGTGAGAGATTAATCGTAGAATCGAAAAGTAAAATGGACATTGAGCTTGC
AGTCTCTTTCGAAGAGGAATTATGGTTCAGAAACCGAAGACATGTCAACT
TTATTGGTTTATGCATACAAATCCTTGTGTATTTTGAAATGACGGTGTTT
TCTATTTCAGCactgttttatttcaaaaatgtttttcaaatgaGTGATCA
CCAATCTAATTTTTACTATAGTATAACGATGGCTTCGTTTTCAATTGGTT
GTATGACTTGCTCTTCGATTGTTGCACGATGCATGGATAGAACGCGAAAA
CTTAAACGACTGACCATCATTTTGTTAACAACATCTATTGTTGGGAATAT
TTTGTACACGATAACTTATTCTGTGTGGTTTCCGATTTTTGGTCGTTTGT
TATGTGGAATGACTAATACAATCAGATCTTGTTACATGGGAGAGATTTCA
AGAACACATCGTaaagaagaatttacaaaaataatcacATTATACGAAAT
TGCAGGTAATATCGCTTCAGCAATTTCACCTGTCACTCCCGCATTATTCG
CTTTTATGCATTTCAACATAACAGCTGGGTGGGTGATCCGACAAGAAAAT
GCCATCGGTTTGATATTAGCCTGCATGACAACATTATTGCTCGTATATAG
TGTAATCTTTTTAAAAGATCTTTCTGTAGATCCTGTTTTCCCAGAAATCC
AAAAGAAACATTTTCCTAACCAAATGGTGGCAGCTtcgaacaacaacaac
aacaacaacgacaacaacgacaacaacaacaacaacaacaacaacaacga
cacTCATTTAGAGGACCAAGGCCTTCTCACTTTCCGAGATATACTACAAA
ATGACGGTATAATGGTCTTCCTAACCTACATGTTTGTATCGGCCACACAA
CATTATCAATTAGACCTTCTAACAAACATGgtagccattatggattttca
atACAGTATATCTCAATATGGCATCATTGTTGCCATAGCAACAGCTCTCA
TGTGCGTTTCAATATACTTCATccaaaaaatgatgacgtcatcattagaT
ACGTATTTTCTATCCATTAACAATCTGGTCTGGATAATTATCGCACAAAC
TTTGGTTTCTTTATCTTTATGGATTAAAAGCTGGGCGTCAAACACTCTCG
GTTTTATTACAGTTGGTTTGGTTGTGCTACTGAACTACTTACATGGAACC
ATTACTATAATTTGTGTGAAGcagattttattcaaattaacTCCTTCACA
TTCAGCCAGCATTATCGATTCTTATCGTTTCAACTCATTAATTGCTGCTG
TTCTTATAGCCTTCTTTACGGCCAGTTACGTTTTCATGGTCAAAGATATG
ATAATGCCGATCTATAACTTGTTATCTTATCTTTTGATTATATACTTGAT
TGtttatcgaaaaaaatatttgaaattattaGAAGATTAAAATAGGTTTC
GAAATaagaatcaatttaacattcaATACCTTTTTGGCAGTTGTAACTTT
TAACTCCCCGTTCATCATTCCACGTCCG Run BLAST on NCBI transcript from alignment at sc0000087:51255..53855+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00008697 ID=TCONS_00008697|Name=TCONS_00008697|organism=Clytia hemisphaerica|type=transcript|length=2601bp|location=Sequence derived from alignment at sc0000087:51255..53855+ (Clytia hemisphaerica)
AAAAAATCCAGATTTGAATATAGAGATTTGTATAGCATTTGTCCTAGTGA
AGTGAGAGATTAATCGTAGAATCGAAAAGTAAAATGGACATTGAGCTTGC
AGTCTCTTTCGAAGAGGAATTATGGTTCAGAAACCGAAGACATGTCAACT
TTATTGGTTTATGCATACAAATCCTTGTGTATTTTGAAATGACGGTGTTT
TCTATTTCAGCactgttttatttcaaaaatgtttttcaaatgaGTGATCA
CCAATCTAATTTTTACTATAGGTATGTCTGATATCGCCATTTCGGTTAAG
GGGATGTACGGGGTTtgtgatttccgaaataccgtgtaattttaccaaaa
tttccgaaattccgtaaaaaaatacttgcaattccgataccgattctttg
ggtatttttcttcgttttgactagtttttcatcaaatttgatttatcaaa
aattcatgtatgaattccgaaaaaaggggataaaaactttatattaccga
aatttcgaatcAATTATTCATGGTTTCCGATTCCGAAACAATTttagaat
tccgaaataccgaaggaattttgcctgatttccgaaattccgaagaaaaa
aagGTCAATTTCCGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNAAAAaccggcccccccccccccccccgt
acGGTTAACTTCTCGCCTTTTCGAGATATTTCTGCTtaaaaaaacgtcta
aaaagTAAATAGTAAAGGGTTATTTGACTTTTCGAAGTTAATCTTTCAAC
TAGCCAGTATCCTGATCATAAAGTGAAATCTTTGTACAGAAAGTTAAATA
AAATATAGAATATTTTTGCATGCAatcttttaaattcaaatcCATTAATT
TCATTTCAGTATAACGATGGCTTCGTTTTCAATTGGTTGTATGACTTGCT
CTTCGATTGTTGCACGATGCATGGATAGAACGCGAAAACTTAAACGACTG
ACCATCATTTTGTTAACAACATCTATTGTTGGGAATATTTTGTACACGAT
AACTTATTCTGTGTGGTTTCCGATTTTTGGTCGTTTGTTATGTGGAATGA
CTAATACAATCAGATCTTGTTACATGGGTAAGATTACCAACAATGTAACA
ACTTTTCTTTTCCTAGCCGTTACTTGTGTCGTTTACTAGCATTTTCATAA
ATTCGGAATATTTTGAGTGGATAGTGGATTAAGATAGAAAATGGAGAAGT
GAAGGTTTATGCTTTTTCTTCCCAGAGTATAAATATAGTTCAAAGTGGGC
AAACTAGCCTGATAAAGGGAAAGTGTAACCTTATTTTTTAACTAGAGAGG
GCACgaataaatgaatatttttagatactgCGCATGCCTAGGACGTCGGG
CATTTCTTCCGTTTGGAAGAAAAGGTTAAAAGAAATCTGACATTCATTTC
TACTAATTTCAGGAGAGATTTCAAGAACACATCGTaaagaagaatttaca
aaaataatcacATTATACGAAATTGCAGGTAATATCGCTTCAGCAATTTC
ACCTGTCACTCCCGCATTATTCGCTTTTATGCATTTCAACATAACAGCTG
GGTGGGTGATCCGACAAGAAAATGCCATCGGTTTGATATTAGCCTGCATG
ACAACATTATTGCTCGTATATAGTGTAATCTTTTTAAAAGATCTTTCTGT
AGATCCTGTTTTCCCAGAAATCCAAAAGAAACATTTTCCTAACCAAATGG
TGGCAGCTtcgaacaacaacaacaacaacaacgacaacaacgacaacaac
aacaacaacaacaacaacaacgacacTCATTTAGAGGACCAAGGCCTTCT
CACTTTCCGAGATATACTACAAAATGACGGTATAATGGTCTTCCTAACCT
ACATGTTTGTATCGGCCACACAACATTATCAATTAGACCTTCTAACAAAC
ATGgtagccattatggattttcaatACAGTATATCTCAATATGGCATCAT
TGTTGCCATAGCAACAGCTCTCATGTGCGTTTCAATATACTTCATccaaa
aaatgatgacgtcatcattagaTACGTATTTTCTATCCATTAACAATCTG
GTCTGGATAATTATCGCACAAACTTTGGTTTCTTTATCTTTATGGATTAA
AAGCTGGGCGTCAAACACTCTCGGTTTTATTACAGTTGGTTTGGTTGTGC
TACTGAACTACTTACATGGAACCATTACTATAATTTGTGTGAAGcagatt
ttattcaaattaacTCCTTCACATTCAGCCAGCATTATCGATTCTTATCG
TTTCAACTCATTAATTGCTGCTGTTCTTATAGCCTTCTTTACGGCCAGTT
ACGTTTTCATGGTCAAAGATATGATAATGCCGATCTATAACTTGTTATCT
TATCTTTTGATTATATACTTGATTGtttatcgaaaaaaatatttgaaatt
attaGAAGATTAAAATAGGTTTCGAAATaagaatcaatttaacattcaAT
ACCTTTTTGGCAGTTGTAACTTTTAACTCCCCGTTCATCATTCCACGTCC
G
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00008697-exon-sc0000087-1491911889:51255..51525 | TCONS_00008697-exon-sc0000087-1491911889:51255..51525 | Clytia hemisphaerica | exon |
| TCONS_00008697-exon-sc0000087-1510915933:51255..51525 | TCONS_00008697-exon-sc0000087-1510915933:51255..51525 | Clytia hemisphaerica | exon |
| TCONS_00008697-exon-sc0000087-1575043694:51255..51525 | TCONS_00008697-exon-sc0000087-1575043694:51255..51525 | Clytia hemisphaerica | exon |
| TCONS_00008697-exon-sc0000087-1491911889:52214..52431 | TCONS_00008697-exon-sc0000087-1491911889:52214..52431 | Clytia hemisphaerica | exon |
| TCONS_00008697-exon-sc0000087-1510915933:52214..52431 | TCONS_00008697-exon-sc0000087-1510915933:52214..52431 | Clytia hemisphaerica | exon |
| TCONS_00008697-exon-sc0000087-1575043694:52214..52431 | TCONS_00008697-exon-sc0000087-1575043694:52214..52431 | Clytia hemisphaerica | exon |
| TCONS_00008697-exon-sc0000087-1491911889:52767..53855 | TCONS_00008697-exon-sc0000087-1491911889:52767..53855 | Clytia hemisphaerica | exon |
| TCONS_00008697-exon-sc0000087-1510915933:52767..53855 | TCONS_00008697-exon-sc0000087-1510915933:52767..53855 | Clytia hemisphaerica | exon |
| TCONS_00008697-exon-sc0000087-1575043694:52767..53855 | TCONS_00008697-exon-sc0000087-1575043694:52767..53855 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000087 | supercontig | sc0000087:51255..53855 + |
Blast
The following BLAST results are available for this feature:
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