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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008659 ID=TCONS_00008659|Name=TCONS_00008659|organism=Clytia hemisphaerica|type=transcript|length=1930bp
caaaaaacgcaaaaattcgagattccagtccaatatctatgcgtgaaact
ataagtgcctcctcgtcgctgcgctcctgcgggggcaaatacaacttgaa
actaaaaaaagtACAACTTTAAAGTATGTTTAGAAATTTTAAATACTAGT
AATAATTTAATATGTACTAACCCTATTTGGCATAAAAACAATTTACAAAA
CCTGGGAGTATTTCAAAACCACGAAATTAAGTTTTTTACCGCTCTCGTCA
TCAAAAGATAGTTCTCAAATCAAATAGTTCTCAAAAGATAGAGCTCATAC
TTTAATGTAGTCGTTTTGGTTTCGAGTATTGTCTGAGCGACTTTTCTCCG
GCTCGCTTAAAAAGGTTTGTACCATCGATGATCGTGACTTCAAAATTCGT
GGTTGCCTTAAAGGCTCCTGTCGAGGTTTGTGTCCGGATATCTTGTTAAC
AATGCCGGAAATCCAAGCATACATTTGGAAACGGAATTGTGGAAATTTAC
CGGAGTAAACAATAATGTTCATAATGGAACCGGACAGCATTAAAACGCCT
AACCATTCATTTAGCATCACCAAATGTTTGCCATGCTCTTGATCAATGTT
TTTAACATCTGGTGAATATAGATATATGCAAGTTATCACGAAATAGTTTA
TATTGTACGGGACCGATGTTAACGCGAACATGAGAACTGAATAAAATAAA
GCGCTAATAATGTCGCGGTCTTTCTTGTTACGGATCCCGAATCGACGTCC
TACATCAAGCGACGGACGATGAGACGAGTGGTGCTTGACGAATTTCTTGA
GGTGTGAATAACTAGCACGTACTAGATTCTCTGACGAGTTTGAAGAAGAT
GGGTTTGAATTGAACACAGATTTAGTGTTTGAATCATTAGCATCTGCTTC
TGATAGACTCTCAAAGACGTCATCTGGACAACTGCTGTTACCACTGTACA
ATCTACCTCGATGAAAAGCAAAGTGTACTCCATTTTTGGGCTGCTTAAGT
TCAGATTGTCTTCCTCTTCGGTGTGCATGCGTGAAATTGATGTAATCGAT
TGAGCCTTCTGATTCGTTTTCGTCAAGAGTGATTAGTGGAGGTGGGCTAA
GGGGTGGTTTCCATTTCGGTGTTGGCGGCGCGCCCATTCCTGAATAAAAC
GATGGCGTACTGCTACGGCGTCGTCGGCTTTCTAAAACGGTGGACGTATC
GACATTATTTCTGAATGAATCGCTTTCTTTAAGAGCGCACGTGATTCGGA
AGAAGAAGATGGTCAGTAAGAGTAAAGGAAGAATGCTCTCGAAGACCAGG
AATGAAAGCGCGATCAGAACATGTTCCAGGGCATTTGAAGATAACAATAA
ACAATGCTCATCGTATATCTGAAGACGATTCATAACGGGAACTTTCAACA
AGATGCATAAAAACCAGATCCCAAAAACAATCATATTGATAAAACGCTTA
GTCAGGCGTTCTTTGAAAGGATGGCAAATAGCTCTGAACCTTTCGTATGC
CATGAAGCAAAGAATCAGTGCACTGACATTCACAGTTATGGGACCTATGT
AAGTCATTTTACAAAGAGTCTGACCTAAATGCCATTCCCCACCGGAAATC
ATTAGATAAAGCATTTGTACTGGAGTCATGATTGAATAAGTACAATCAGC
GATCGCTAAATGGATAACAAACCAGCGGAAATTTGCCGCTCGCTTCATCT
TGAAACCAAAGAAGAACATAACGAATATATTTCCAACGATTCCAAAGATC
ATAATGAAACCATAGATTCCACTACGGACATATATATCTGCGTCCTTCAA
CTCCATTCTCAAAATGTAATCTCGATTCCCCAATatcttattttattgtt
tttttttatagattATTAGTCATTGACAAGACTGCCAAAATGAATATCCA
GGTCCCGAGTtcgttttttttgctttttct Run BLAST on NCBI protein sequence of TCONS_00008659-protein >TCONS_00008659-protein ID=TCONS_00008659-protein|Name=TCONS_00008659-protein|organism=Clytia hemisphaerica|type=polypeptide|length=503bp
MELKDADIYVRSGIYGFIMIFGIVGNIFVMFFFGFKMKRAANFRWFVIHL
AIADCTYSIMTPVQMLYLMISGGEWHLGQTLCKMTYIGPITVNVSALILC
FMAYERFRAICHPFKERLTKRFINMIVFGIWFLCILLKVPVMNRLQIYDE
HCLLLSSNALEHVLIALSFLVFESILPLLLLTIFFFRITCALKESDSFRN
NVDTSTVLESRRRRSSTPSFYSGMGAPPTPKWKPPLSPPPLITLDENESE
GSIDYINFTHAHRRGRQSELKQPKNGVHFAFHRGRLYSGNSSCPDDVFES
LSEADANDSNTKSVFNSNPSSSNSSENLVRASYSHLKKFVKHHSSHRPSL
DVGRRFGIRNKKDRDIISALFYSVLMFALTSVPYNINYFVITCIYLYSPD
VKNIDQEHGKHLVMLNEWLGVLMLSGSIMNIIVYSGKFPQFRFQMYAWIS
GIVNKISGHKPRQEPLRQPRILKSRSSMVQTFLSEPEKSRSDNTRNQNDY
IKV Run BLAST on NCBI transcript from alignment at sc0000086:458139..460068 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00008659 ID=TCONS_00008659|Name=TCONS_00008659|organism=Clytia hemisphaerica|type=transcript|length=1930bp|location=Sequence derived from alignment at sc0000086:458139..460068 (Clytia hemisphaerica)
agaaaaagcaaaaaaaacgaACTCGGGACCTGGATATTCATTTTGGCAGT
CTTGTCAATGACTAATaatctataaaaaaaaacaataaaataagatATTG
GGGAATCGAGATTACATTTTGAGAATGGAGTTGAAGGACGCAGATATATA
TGTCCGTAGTGGAATCTATGGTTTCATTATGATCTTTGGAATCGTTGGAA
ATATATTCGTTATGTTCTTCTTTGGTTTCAAGATGAAGCGAGCGGCAAAT
TTCCGCTGGTTTGTTATCCATTTAGCGATCGCTGATTGTACTTATTCAAT
CATGACTCCAGTACAAATGCTTTATCTAATGATTTCCGGTGGGGAATGGC
ATTTAGGTCAGACTCTTTGTAAAATGACTTACATAGGTCCCATAACTGTG
AATGTCAGTGCACTGATTCTTTGCTTCATGGCATACGAAAGGTTCAGAGC
TATTTGCCATCCTTTCAAAGAACGCCTGACTAAGCGTTTTATCAATATGA
TTGTTTTTGGGATCTGGTTTTTATGCATCTTGTTGAAAGTTCCCGTTATG
AATCGTCTTCAGATATACGATGAGCATTGTTTATTGTTATCTTCAAATGC
CCTGGAACATGTTCTGATCGCGCTTTCATTCCTGGTCTTCGAGAGCATTC
TTCCTTTACTCTTACTGACCATCTTCTTCTTCCGAATCACGTGCGCTCTT
AAAGAAAGCGATTCATTCAGAAATAATGTCGATACGTCCACCGTTTTAGA
AAGCCGACGACGCCGTAGCAGTACGCCATCGTTTTATTCAGGAATGGGCG
CGCCGCCAACACCGAAATGGAAACCACCCCTTAGCCCACCTCCACTAATC
ACTCTTGACGAAAACGAATCAGAAGGCTCAATCGATTACATCAATTTCAC
GCATGCACACCGAAGAGGAAGACAATCTGAACTTAAGCAGCCCAAAAATG
GAGTACACTTTGCTTTTCATCGAGGTAGATTGTACAGTGGTAACAGCAGT
TGTCCAGATGACGTCTTTGAGAGTCTATCAGAAGCAGATGCTAATGATTC
AAACACTAAATCTGTGTTCAATTCAAACCCATCTTCTTCAAACTCGTCAG
AGAATCTAGTACGTGCTAGTTATTCACACCTCAAGAAATTCGTCAAGCAC
CACTCGTCTCATCGTCCGTCGCTTGATGTAGGACGTCGATTCGGGATCCG
TAACAAGAAAGACCGCGACATTATTAGCGCTTTATTTTATTCAGTTCTCA
TGTTCGCGTTAACATCGGTCCCGTACAATATAAACTATTTCGTGATAACT
TGCATATATCTATATTCACCAGATGTTAAAAACATTGATCAAGAGCATGG
CAAACATTTGGTGATGCTAAATGAATGGTTAGGCGTTTTAATGCTGTCCG
GTTCCATTATGAACATTATTGTTTACTCCGGTAAATTTCCACAATTCCGT
TTCCAAATGTATGCTTGGATTTCCGGCATTGTTAACAAGATATCCGGACA
CAAACCTCGACAGGAGCCTTTAAGGCAACCACGAATTTTGAAGTCACGAT
CATCGATGGTACAAACCTTTTTAAGCGAGCCGGAGAAAAGTCGCTCAGAC
AATACTCGAAACCAAAACGACTACATTAAAGTATGAGCTCTATCTTTTGA
GAACTATTTGATTTGAGAACTATCTTTTGATGACGAGAGCGGTAAAAAAC
TTAATTTCGTGGTTTTGAAATACTCCCAGGTTTTGTAAATTGTTTTTATG
CCAAATAGGGTTAGTACATATTAAATTATTACTAGTATTTAAAATTTCTA
AACATACTTTAAAGTTGTactttttttagtttcaagttgtatttgccccc
gcaggagcgcagcgacgaggaggcacttatagtttcacgcatagatattg
gactggaatctcgaatttttgcgttttttg Coding sequence (CDS) from alignment at sc0000086:458139..460068 >TCONS_00008659 ID=TCONS_00008659|Name=TCONS_00008659|organism=Clytia hemisphaerica|type=CDS|length=1512bp|location=Sequence derived from alignment at sc0000086:458139..460068 (Clytia hemisphaerica)
ATGGAGTTGAAGGACGCAGATATATATGTCCGTAGTGGAATCTATGGTTT
CATTATGATCTTTGGAATCGTTGGAAATATATTCGTTATGTTCTTCTTTG
GTTTCAAGATGAAGCGAGCGGCAAATTTCCGCTGGTTTGTTATCCATTTA
GCGATCGCTGATTGTACTTATTCAATCATGACTCCAGTACAAATGCTTTA
TCTAATGATTTCCGGTGGGGAATGGCATTTAGGTCAGACTCTTTGTAAAA
TGACTTACATAGGTCCCATAACTGTGAATGTCAGTGCACTGATTCTTTGC
TTCATGGCATACGAAAGGTTCAGAGCTATTTGCCATCCTTTCAAAGAACG
CCTGACTAAGCGTTTTATCAATATGATTGTTTTTGGGATCTGGTTTTTAT
GCATCTTGTTGAAAGTTCCCGTTATGAATCGTCTTCAGATATACGATGAG
CATTGTTTATTGTTATCTTCAAATGCCCTGGAACATGTTCTGATCGCGCT
TTCATTCCTGGTCTTCGAGAGCATTCTTCCTTTACTCTTACTGACCATCT
TCTTCTTCCGAATCACGTGCGCTCTTAAAGAAAGCGATTCATTCAGAAAT
AATGTCGATACGTCCACCGTTTTAGAAAGCCGACGACGCCGTAGCAGTAC
GCCATCGTTTTATTCAGGAATGGGCGCGCCGCCAACACCGAAATGGAAAC
CACCCCTTAGCCCACCTCCACTAATCACTCTTGACGAAAACGAATCAGAA
GGCTCAATCGATTACATCAATTTCACGCATGCACACCGAAGAGGAAGACA
ATCTGAACTTAAGCAGCCCAAAAATGGAGTACACTTTGCTTTTCATCGAG
GTAGATTGTACAGTGGTAACAGCAGTTGTCCAGATGACGTCTTTGAGAGT
CTATCAGAAGCAGATGCTAATGATTCAAACACTAAATCTGTGTTCAATTC
AAACCCATCTTCTTCAAACTCGTCAGAGAATCTAGTACGTGCTAGTTATT
CACACCTCAAGAAATTCGTCAAGCACCACTCGTCTCATCGTCCGTCGCTT
GATGTAGGACGTCGATTCGGGATCCGTAACAAGAAAGACCGCGACATTAT
TAGCGCTTTATTTTATTCAGTTCTCATGTTCGCGTTAACATCGGTCCCGT
ACAATATAAACTATTTCGTGATAACTTGCATATATCTATATTCACCAGAT
GTTAAAAACATTGATCAAGAGCATGGCAAACATTTGGTGATGCTAAATGA
ATGGTTAGGCGTTTTAATGCTGTCCGGTTCCATTATGAACATTATTGTTT
ACTCCGGTAAATTTCCACAATTCCGTTTCCAAATGTATGCTTGGATTTCC
GGCATTGTTAACAAGATATCCGGACACAAACCTCGACAGGAGCCTTTAAG
GCAACCACGAATTTTGAAGTCACGATCATCGATGGTACAAACCTTTTTAA
GCGAGCCGGAGAAAAGTCGCTCAGACAATACTCGAAACCAAAACGACTAC
ATTAAAGTATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00008659-exon-sc0000086-1491911889:458139..460068 | TCONS_00008659-exon-sc0000086-1491911889:458139..460068 | Clytia hemisphaerica | exon |
| TCONS_00008659-exon-sc0000086-1510915933:458139..460068 | TCONS_00008659-exon-sc0000086-1510915933:458139..460068 | Clytia hemisphaerica | exon |
| TCONS_00008659-exon-sc0000086-1575043694:458139..460068 | TCONS_00008659-exon-sc0000086-1575043694:458139..460068 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000086 | supercontig | sc0000086:458139..460068 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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