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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008623 ID=TCONS_00008623|Name=TCONS_00008623|organism=Clytia hemisphaerica|type=transcript|length=1822bp
AAATGAGTTTCCAGACAACTTTAAGAAGACACATTCCAATTTACCCGAAG
CCACCTTCAAATGATATCCATCTTACTTACACAACTGATGGGAGTAGAGT
CAAATATCATGTCGAGAGTAAACCAATGCAATTACAGCCTTTGAAAGaaA
GCATGACGACCTCAGATGGAAACAAATCTGCTGACACAGCATTTGGAGTC
AACCAAAATGGTAGCACAGCTACGACGGCCACAAACCctcaaaagaagca
aacaacACGAAAAGTTTTCAGCCATGCAGCTCAACTAGAACTCGAAAACG
CTTTTCGTATGTCACCCTATTTGACAGCTTGGAAACGACAATGTCTCTCA
CAAAAATTGAGCCTGACCGAAAGACAAGTTAGAGTATGGTTCCAAAATCG
ACGCATGCGTATTAAAAGTGAGCGCGGACGTTGCGGTAAACCATCACCAA
CGAAAAAACACGTCGAGACAAGCAGCACCAAAGCGTCACCTCCACCCGAT
TACAGCACAGCCACAACGACCACAGGCTTTCCGAACAGTTTAATGCCTTA
TACTTCTTTCCAGCCTAGTTTCCAATCTCCTTTCAATCAAGCTCCAATCT
ACACAGCCACTTATCAAAATGGAGCATTTTCAGAAGGATTATCGTTGCCT
TTCAACGTATTATCGAgcaaaatcaatcaaatttcGAACAATGATTCTAC
AGTTTCGACGACTAACTTTCCAATTACGACCAATAGTTATCCTATTACGA
CATCCAACACATTTTACGATACTAAAAACACAGACTGTTTACGGCTTCCA
TGCTACGCCACCAGTAGCGAAAGTTACGAGCAACAACAAAATCAGTTTCT
TGAACAACAGAAAGGacaacaaattcaacaaaacactcaacaattttttc
aacaagATAATGAAACTGCTCAATTTATAAACAACTTTGATATTACAGAA
TTGAGAGCGTTGACAACCTGCTCTTACGAATCTTCTTTAGCTGATGTGAT
GACTTATGGGAATGTTATTTAAAACTGTTATCTAGGATCTTCAGCCCCAG
CTGTAATGTGGAAACCATGCCAGCGTAATTAGACTTACTCCATTGATGGT
GGTTTCTACATAATAGTAAGAAAAAGTACACATTGAAAGCTAACAGACTC
TAAGGCATAAATCTTCTGACCTGCAGCTTCCCGAGTTCAAATTTTATCGC
CTGAAGGAACAGTGTTGGATAATTGCAAGTATTGATCCAGTCTAAATGAA
TCCTTCTAAAATCGAACTCGAACCCTTTAGAAAAGGTTTTAAGGGATAAA
AGAGATGTATTTAGTcagcaaaaatgaaaatgggGAATACAGTGTTTGTT
TTGGGTCGTTTGAAGGAACTCAATTAGATTTAGAATTTATTAGAAGATGG
TATTTGCTGAGTTTATTTGGTAAAGATtatctaaaactcaaaaagagaAA
TGGACTACAATTCAGATTTCTCATTATTCTTTTAGGTTGTACATAATTTA
CTCAGAATATCTATGTATATAATTTAGgttttttatcaaagtttttttct
tagaatatttttttgaatactTAGTAAGAATATCAGACAAGATGTACAGT
CTTTCCTCTCTTGGAACTAAGAATGTTCGGGTGTTCTTAGGCATGCTCTC
AACAtgcaatgctggacaaaaggttgtagacaaatgaaatttcagtgaaa
aatgatgagaaatagagcaaaatgactcttcactgtgtctgaaaggggat
ggaagttaagaaaaacacttttgaagtcgtttcattgcttttgaattgct
tttgaggaaaccacaagcaaaa Run BLAST on NCBI protein sequence of TCONS_00008623-protein >TCONS_00008623-protein ID=TCONS_00008623-protein|Name=TCONS_00008623-protein|organism=Clytia hemisphaerica|type=polypeptide|length=339bp
MSFQTTLRRHIPIYPKPPSNDIHLTYTTDGSRVKYHVESKPMQLQPLKES
MTTSDGNKSADTAFGVNQNGSTATTATNPQKKQTTRKVFSHAAQLELENA
FRMSPYLTAWKRQCLSQKLSLTERQVRVWFQNRRMRIKSERGRCGKPSPT
KKHVETSSTKASPPPDYSTATTTTGFPNSLMPYTSFQPSFQSPFNQAPIY
TATYQNGAFSEGLSLPFNVLSSKINQISNNDSTVSTTNFPITTNSYPITT
SNTFYDTKNTDCLRLPCYATSSESYEQQQNQFLEQQKGQQIQQNTQQFFQ
QDNETAQFINNFDITELRALTTCSYESSLADVMTYGNVI Run BLAST on NCBI transcript from alignment at sc0000086:518432..523010- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00008623 ID=TCONS_00008623|Name=TCONS_00008623|organism=Clytia hemisphaerica|type=transcript|length=4579bp|location=Sequence derived from alignment at sc0000086:518432..523010- (Clytia hemisphaerica)
AAATGAGTTTCCAGACAACTTTAAGAAGACACATTCCAATTTACCCGAAG
CCACCTTCAAATGATATCCATCTTACTTACACAACTGATGGGAGTAGAGT
CAAATATCATGTCGAGAGTAAACCAATGCAATTACAGCCTTTGAAAGGTA
GGTTTTGAAACCATAAAGACTTTGTCTTTGTAAAAATAGTTCAGTTTGAG
AAATGTTAGATAGAAAACTTAATTACATTTTAGGGCCTACATTTAACAAA
CAACTATGTTAGTTTACCCTAAAAAAAATAAAAAATTTAGTGGTATTGAT
ATTTGATATCCAAGTTTTTCTCATATTATGTTATTATGCCATAAACAACT
TATTTCGCAAATTATTTCACAAATTATCATATTGCACGTCCACGTGACAC
TCCAGTTATTCATTGCCTTTTTTAAGGATGATGATTCATTAGGCCCAAAC
TGATTATCATCAAAAAAGGGGAAAATCTCCATCACAGAAAAATCATTCCC
AAGAAATCAAATTTTTGAACTTTCAACGGAAATACAACACGGAAAAAAGT
TACCAATGCGTTTATGATATGAAACTAGCAAAACAGTTAAAATTGAAAAT
TCCAAAACACCTCAATTTACCTAAATTTCAACTTTCGTTTTAATGCAAGC
GCAGCTTGTTTCCGAGTTCAGTACTTATTTTTACATTAGCGTCAAACGTC
TTATTCGAAAGTATTCCGTGCGACAAGTTCCTTGTAAGGCGATCACCGTA
ATGAGTGGACGAACATTTTGTTAAAACCGATTATTTCCATATTTGGCATT
ATACGGTAATAATCAATTTAAAGTCAATTACATTTAATTATGTTGATATC
AATGTTTTACGCAATATGATAAAAGTGTTTTGTTGATATCTTATTATAAT
TTCGGTCTGTTGACAGTAAAGGTTGTAAGATAAGCTCAGCAGCTGAAACT
GGACAGAAATTTGACCCGATAGTAAAACAACGAACGCGATGTATCAAATG
ATAAACCCCTTTTAATCTGCGAATGAATATCTCCTAGATCTCGAGTGAGC
CATCTCAGCTGGCACACAACGTACGTTTCTTACACATTCTTCGAACGTCC
ATGACTTCTATGTTACGTTGAAATCATTGAGTTTAATGCTGAAAAGGCAA
ATCTTTAACCTTTCCCAAGCATGAAAAAGTGAACCCTTAAGATCTGCGCT
ACATTTCTCAGATTGAATCTAGCACTTTCTTTGTTCTCGCGATGATGGCG
TTTTACATTTTTCAAATTCTCCTGTTAAATTTTACCTACAACCAAGCGTT
TGTATAAAAACAACGCAGTCAGTGCAGTTATGTAGAAAATAAGTGCCGAC
TCTAGCCTTTGGTCATACCTTATTGATTGAAACAACGTTGTCATTTGGGA
TACAAAATCTTTCTGGTTTGAATTGACCTGGAGTTAATCTTTTCATCCAT
ATATCCTCTTTTCAAAGAAGTAGTGTCCTTTATTGTACTGCTCCCGTCAT
AGACTTTGCCTTTGACTTAAACTTAGACTTGAATGAATATAATCCTGGTG
TGATTTGTAAATTTCGGATCTCATTATAATAAAAAACTTCTGCACAGTAG
AAACCTTTGTGTACAAACTTGAGTTTCAGCTGGTAGGTGAAGGCTAGTTT
GATTATGATTCATAGACGCCTAATGTAAATTAGCAACAACTTACGAAAGG
ATAGCAAAATATAAATTTCAGTTGTGAATATTACATAAAAATGGGGAATA
TTCCTTTGTGGGACCGGGAGACCGGGCTTCCGCATCACTTCCAAACGGGG
AGCATGACTCAAAAAGCTATATTCTTTGTAAAATGATTAATACGCTCGGA
TAGCTCTCTGAGAAAACTATAGTTAGATAACGAGGTCGCCATAAAGTGCC
CTCGATTACATTAAAATGGATGTAAAGTGGTGTTTACAAAGGAAAAGAGA
TAATACGTTCAAAATTACAATACAATAGCTTAAACATCATCACGTCACTC
GTATTAAGAATGACGTGTTTTGAAACCGGCGATTATCTTTCTATTCCGTA
AAGTCAATTGCAGTTGAATTCTCTATCTTGCTATTGTCATTTAACGAGCG
AAACAATAGAAGAGAACAATAGCANTTTCTCTCTCTTGCTATTGTCATTT
AACGAGCGAAACAATAGAAGAGAACAATAGCACCCTTAATGACTTTCGAT
TGTGTGTTTTCTATAACGTAGAAGCTAACCATAATGACACCGGCATAATT
AATTGCGCGCGGGTATAAAAGACTTTGCAAGAATTTTAAATGGCGGCATT
TTGAGTTTTGCATTCAATCTCAAAACATAGTAAAAAAGACCTATACAACT
CATTGATATTACTCTATATTACAAAGACTTGACAGTATTATTCCGTCCAG
AGGCACTTGACTGTTTTGTTTATTTACTTGTTTGTTTTTGAAAGCCGCAG
TCACATTTTAAGGTAAACATTCATTTTACGGAGAGTGTTTAAATGCTATT
TGAAGGCACTTTGACTTTTCTAGCAAACGAGGCACATTGATGACGTCATT
GGCATGTCAGAAAGCTGAGAGTTTTCCGCTTATTATAAACTGTGCGTATT
CAGGCTAAGATAGATTTTCCGACTTTTGGAGAAACTCTATTGGAGAAACT
CTATTTATATATCGAGGACAACAAAGAGAGCATTTGACTTAACAGAACTG
AGTTGAAATTTTGCTTTTGAAAGACGTTCGGTGATTTTTTAGCTTTTCGC
CGATGATCATTATGCTAGCCTTGAATGCAGAAAGTAAAAGAAAAAGTTTG
GAAAAGGGGTAAAATTAGATTTTTAATGCAAGTAACTAAAATTTTAGTTC
ATCTTGTTCTCCCTGCTTTTGATTGGTAATTGGTGATATTTTTCTTCATT
TTAGAAAGCATGACGACCTCAGATGGAAACAAATCTGCTGACACAGCATT
TGGAGTCAACCAAAATGGTAGCACAGCTACGACGGCCACAAACCCTCAAA
AGAAGCAAACAACACGAAAAGTTTTCAGCCATGCAGCTCAACTAGAACTC
GAAAACGCTTTTCGTATGTCACCCTATTTGACAGCTTGGAAACGACAATG
TCTCTCACAAAAATTGAGCCTGACCGAAAGACAAGTTAGAGTATGGTTCC
AAAATCGACGCATGCGTATTAAAAGTGAGCGCGGACGTTGCGGTAAACCA
TCACCAACGAAAAAACACGTCGAGACAAGCAGCACCAAAGCGTCACCTCC
ACCCGATTACAGCACAGCCACAACGACCACAGGCTTTCCGAACAGTTTAA
TGCCTTATACTTCTTTCCAGCCTAGTTTCCAATCTCCTTTCAATCAAGCT
CCAATCTACACAGCCACTTATCAAAATGGAGCATTTTCAGAAGGATTATC
GTTGCCTTTCAACGTATTATCGAGCAAAATCAATCAAATTTCGAACAATG
ATTCTACAGTTTCGACGACTAACTTTCCAATTACGACCAATAGTTATCCT
ATTACGACATCCAACACATTTTACGATACTAAAAACACAGACTGTTTACG
GCTTCCATGCTACGCCACCAGTAGCGAAAGTTACGAGCAACAACAAAATC
AGTTTCTTGAACAACAGAAAGGACAACAAATTCAACAAAACACTCAACAA
TTTTTTCAACAAGATAATGAAACTGCTCAATTTATAAACAACTTTGATAT
TACAGAATTGAGAGCGTTGACAACCTGCTCTTACGAATCTTCTTTAGCTG
ATGTGATGACTTATGGGAATGTTATTTAAAACTGTTATCTAGGATCTTCA
GCCCCAGCTGTAATGTGGAAACCATGCCAGCGTAATTAGACTTACTCCAT
TGATGGTGGTTTCTACATAATAGTAAGAAAAAGTACACATTGAAAGCTAA
CAGACTCTAAGGCATAAATCTTCTGACCTGCAGCTTCCCGAGTTCAAATT
TTATCGCCTGAAGGAACAGTGTTGGATAATTGCAAGTATTGATCCAGTCT
AAATGAATCCTTCTAAAATCGAACTCGAACCCTTTAGAAAAGGTTTTAAG
GGATAAAAGAGATGTATTTAGTCAGCAAAAATGAAAATGGGGAATACAGT
GTTTGTTTTGGGTCGTTTGAAGGAACTCAATTAGATTTAGAATTTATTAG
AAGATGGTATTTGCTGAGTTTATTTGGTAAAGATTATCTAAAACTCAAAA
AGAGAAATGGACTACAATTCAGATTTCTCATTATTCTTTTAGGTTGTACA
TAATTTACTCAGAATATCTATGTATATAATTTAGGTTTTTTATCAAAGTT
TTTTTCTTAGAATATTTTTTTGAATACTTAGTAAGAATATCAGACAAGAT
GTACAGTCTTTCCTCTCTTGGAACTAAGAATGTTCGGGTGTTCTTAGGCA
TGCTCTCAACATGCAATGCTGGACAAAAGGTTGTAGACAAATGAAATTTC
AGTGAAAAATGATGAGAAATAGAGCAAAATGACTCTTCACTGTGTCTGAA
AGGGGATGGAAGTTAAGAAAAACACTTTTGAAGTCGTTTCATTGCTTTTG
AATTGCTTTTGAGGAAACCACAAGCAAAA Coding sequence (CDS) from alignment at sc0000086:518432..523010- >TCONS_00008623 ID=TCONS_00008623|Name=TCONS_00008623|organism=Clytia hemisphaerica|type=CDS|length=2040bp|location=Sequence derived from alignment at sc0000086:518432..523010- (Clytia hemisphaerica)
AAAGCATGACGACCTCAGATGGAAACAAATCTGCTGACACAGCATTTGGA
GTCAACCAAAATGGTAGCACAGCTACGACGGCCACAAACCCTCAAAAGAA
GCAAACAACACGAAAAGTTTTCAGCCATGCAGCTCAACTAGAACTCGAAA
ACGCTTTTCGTATGTCACCCTATTTGACAGCTTGGAAACGACAATGTCTC
TCACAAAAATTGAGCCTGACCGAAAGACAAGTTAGAGTATGGTTCCAAAA
TCGACGCATGCGTATTAAAAGTGAGCGCGGACGTTGCGGTAAACCATCAC
CAACGAAAAAACACGTCGAGACAAGCAGCACCAAAGCGTCACCTCCACCC
GATTACAGCACAGCCACAACGACCACAGGCTTTCCGAACAGTTTAATGCC
TTATACTTCTTTCCAGCCTAGTTTCCAATCTCCTTTCAATCAAGCTCCAA
TCTACACAGCCACTTATCAAAATGGAGCATTTTCAGAAGGATTATCGTTG
CCTTTCAACGTATTATCGAGCAAAATCAATCAAATTTCGAACAATGATTC
TACAGTTTCGACGACTAACTTTCCAATTACGACCAATAGTTATCCTATTA
CGACATCCAACACATTTTACGATACTAAAAACACAGACTGTTTACGGCTT
CCATGCTACGCCACCAGTAGCGAAAGTTACGAGCAACAACAAAATCAGTT
TCTTGAACAACAGAAAGGACAACAAATTCAACAAAACACTCAACAATTTT
TTCAACAAGATAATGAAACTGCTCAATTTATAAACAACTTTGATATTACA
GAATTGAGAGCGTTGACAACCTGCTCTTACGAATCTTCTTTAGCTGATGT
GATGACTTATGGGAATGTTATTTAAATGAGTTTCCAGACAACTTTAAGAA
GACACATTCCAATTTACCCGAAGCCACCTTCAAATGATATCCATCTTACT
TACACAACTGATGGGAGTAGAGTCAAATATCATGTCGAGAGTAAACCAAT
GCAATTACAGCCTTTGAAAGAAAGCATGACGACCTCAGATGGAAACAAAT
CTGCTGACACAGCATTTGGAGTCAACCAAAATGGTAGCACAGCTACGACG
GCCACAAACCCTCAAAAGAAGCAAACAACACGAAAAGTTTTCAGCCATGC
AGCTCAACTAGAACTCGAAAACGCTTTTCGTATGTCACCCTATTTGACAG
CTTGGAAACGACAATGTCTCTCACAAAAATTGAGCCTGACCGAAAGACAA
GTTAGAGTATGGTTCCAAAATCGACGCATGCGTATTAAAAGTGAGCGCGG
ACGTTGCGGTAAACCATCACCAACGAAAAAACACGTCGAGACAAGCAGCA
CCAAAGCGTCACCTCCACCCGATTACAGCACAGCCACAACGACCACAGGC
TTTCCGAACAGTTTAATGCCTTATACTTCTTTCCAGCCTAGTTTCCAATC
TCCTTTCAATCAAGCTCCAATCTACACAGCCACTTATCAAAATGGAGCAT
TTTCAGAAGGATTATCGTTGCCTTTCAACGTATTATCGAGCAAAATCAAT
CAAATTTCGAACAATGATTCTACAGTTTCGACGACTAACTTTCCAATTAC
GACCAATAGTTATCCTATTACGACATCCAACACATTTTACGATACTAAAA
ACACAGACTGTTTACGGCTTCCATGCTACGCCACCAGTAGCGAAAGTTAC
GAGCAACAACAAAATCAGTTTCTTGAACAACAGAAAGGACAACAAATTCA
ACAAAACACTCAACAATTTTTTCAACAAGATAATGAAACTGCTCAATTTA
TAAACAACTTTGATATTACAGAATTGAGAGCGTTGACAACCTGCTCTTAC
GAATCTTCTTTAGCTGATGTGATGACTTATGGGAATGTTATTTAAATGAG
TTTCCAGACAACTTTAAGAAGACACATTCCAATTTACCCGAAGCCACCTT
CAAATGATATCCATCTTACTTACACAACTGATGGGAGTAGAGTCAAATAT
CATGTCGAGAGTAAACCAATGCAATTACAGCCTTTGAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00008623-exon-sc0000086-1575043694:522864..523010 | TCONS_00008623-exon-sc0000086-1575043694:522864..523010 | Clytia hemisphaerica | exon |
| TCONS_00008623-exon-sc0000086-1575043694:518432..520106 | TCONS_00008623-exon-sc0000086-1575043694:518432..520106 | Clytia hemisphaerica | exon |
| TCONS_00008623-exon-sc0000086-1510915933:522864..523010 | TCONS_00008623-exon-sc0000086-1510915933:522864..523010 | Clytia hemisphaerica | exon |
| TCONS_00008623-exon-sc0000086-1510915933:518432..520106 | TCONS_00008623-exon-sc0000086-1510915933:518432..520106 | Clytia hemisphaerica | exon |
| TCONS_00008623-exon-sc0000086-1491911889:522864..523010 | TCONS_00008623-exon-sc0000086-1491911889:522864..523010 | Clytia hemisphaerica | exon |
| TCONS_00008623-exon-sc0000086-1491911889:518432..520106 | TCONS_00008623-exon-sc0000086-1491911889:518432..520106 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000086 | supercontig | sc0000086:518432..523010 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003677 | DNA binding |
| GO:0043565 | sequence-specific DNA binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006355 | regulation of transcription, DNA-templated |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006355 |
regulation of transcription, DNA-templated |
| molecular_function |
GO:0003677 |
DNA binding |
| molecular_function |
GO:0043565 |
sequence-specific DNA binding |
Blast
The following BLAST results are available for this feature:
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