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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008614 ID=TCONS_00008614|Name=TCONS_00008614|organism=Clytia hemisphaerica|type=transcript|length=1561bp
CtttgttcaaaatatttttttagtatCTCTTTTCTATcctaaaactgaaa
ataaaagtatCTTAAAAATATACCCTAAAATTTCGGACGCAAGCacacaa
actaaaataaaaacttttctttatcCATTCTTAAGTTTGCTTTGACGTGA
GTATAAAGTGGCTTCTCTTCAACACTAACCAAATCATACTGTAAAGTATT
CAGACCATCCTGAGCAAAATACCGATTAGAGTTACTCAGCTTTTGATTCA
GTTTCGACTGCTCGTTTCCAGTTGGTCGGTTTTTATTTGAATGTTTCAGC
ATTTTGTATCGTGCAACTGAAATAGAGTGTCGGTGAACCGTCAGTCCGTT
TGCCCTTAACCGATTATACAAATTATCGTCCTCGCCACCCCATCCGTAAA
AAAGATTCGTAGCTCCGTTAACTTGCCGGTAATGTTTTGACCACAAGGAT
GAAACACCACCAAAGATTTCATTATAGGGGAGAATATACCTCATAGTGCT
TACACCTGCTGATAAATGTTTCGGCGAAACTTGGCAACCGTAATCGATTT
TATCGTTCTCAGGTAGAAGATCAACATCGTGTACGATGAAACATTGATAG
GGAAATAATTTCAAACCTTGATCGAATCCGATATTGAATAATTTAGCTCT
ATTGAATTTATCTTGGCCAGTTTGCTCCACCACTAGAATTCTATAGTGTA
ATTTCTGCCGTTTTAAGATTGGATGTAACTGTCGTAGAAGGATAGGTAAT
TGCAATTCACGGTTTCGGAAAGGGATTACAATCAAAGTGGATTGTTTTGG
TTTACAATCTTCAGGCTGCCACCACCCTCCTTTCTTGACAAACTTGAGCT
CGTTCTCATAAAGCCAATCTAATGAGACATTAGCTTCATTTACAGCCAAC
GGACCAATCAAACTTGAGGCCGTTGAGCAATTCTGTATATCTTTAGCAGA
GCAATGCGTTTTACGGTAAACGGCAAACTCTTCATTATCTGTTGGTGAAT
TTTTCGTATACCACTCTTTAAAGTCATCAGGACATCTTCCATGACTCTTA
GTTGCGTCTGTAACTAAATCTTTTATTGGCGGTGGCCGATAATTATCTCT
ATTCTTCAAGGTCGTTTCGTTAACACTTTGAATCATATTGGTGAATAAAT
TCAAGATATTTTGTAGTGAATTCTTAACATTGCTTTCGATCCCTTTTGCA
GTCTCTTTAAGCTTGGAATCCAAAGTAAGTTGTGTCTCTACCTTTGTCTT
GTTGAAGACCTGTTCAATAGCACTCATCGATAAAGTAGGCCGATATTGAT
GGCCCGGTTGAACCAGTTGTATGTTCTTCACATTGCGATACTCACGATTG
ATGCTGAATAATGaatctttgaaaatgataatcAAAAGTAAAAATGCAAC
TACAAAGAATAATTTGCCTTGAGAATTCGACATTGTCTGTTGCCCAATCA
TGATTTTGTNGTTTATCACATTTTCACACGTTTTGTTAGCAGAAAATTCT
TTATACTTTATCAATTATCAGAATCTTGCAGTTGCCAAGTGATATTCCAT
TGAATTATTCC Run BLAST on NCBI transcript from alignment at sc0000086:436675..438235- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00008614 ID=TCONS_00008614|Name=TCONS_00008614|organism=Clytia hemisphaerica|type=transcript|length=1561bp|location=Sequence derived from alignment at sc0000086:436675..438235- (Clytia hemisphaerica)
CTTTGTTCAAAATATTTTTTTAGTATCTCTTTTCTATCCTAAAACTGAAA
ATAAAAGTATCTTAAAAATATACCCTAAAATTTCGGACGCAAGCACACAA
ACTAAAATAAAAACTTTTCTTTATCCATTCTTAAGTTTGCTTTGACGTGA
GTATAAAGTGGCTTCTCTTCAACACTAACCAAATCATACTGTAAAGTATT
CAGACCATCCTGAGCAAAATACCGATTAGAGTTACTCAGCTTTTGATTCA
GTTTCGACTGCTCGTTTCCAGTTGGTCGGTTTTTATTTGAATGTTTCAGC
ATTTTGTATCGTGCAACTGAAATAGAGTGTCGGTGAACCGTCAGTCCGTT
TGCCCTTAACCGATTATACAAATTATCGTCCTCGCCACCCCATCCGTAAA
AAAGATTCGTAGCTCCGTTAACTTGCCGGTAATGTTTTGACCACAAGGAT
GAAACACCACCAAAGATTTCATTATAGGGGAGAATATACCTCATAGTGCT
TACACCTGCTGATAAATGTTTCGGCGAAACTTGGCAACCGTAATCGATTT
TATCGTTCTCAGGTAGAAGATCAACATCGTGTACGATGAAACATTGATAG
GGAAATAATTTCAAACCTTGATCGAATCCGATATTGAATAATTTAGCTCT
ATTGAATTTATCTTGGCCAGTTTGCTCCACCACTAGAATTCTATAGTGTA
ATTTCTGCCGTTTTAAGATTGGATGTAACTGTCGTAGAAGGATAGGTAAT
TGCAATTCACGGTTTCGGAAAGGGATTACAATCAAAGTGGATTGTTTTGG
TTTACAATCTTCAGGCTGCCACCACCCTCCTTTCTTGACAAACTTGAGCT
CGTTCTCATAAAGCCAATCTAATGAGACATTAGCTTCATTTACAGCCAAC
GGACCAATCAAACTTGAGGCCGTTGAGCAATTCTGTATATCTTTAGCAGA
GCAATGCGTTTTACGGTAAACGGCAAACTCTTCATTATCTGTTGGTGAAT
TTTTCGTATACCACTCTTTAAAGTCATCAGGACATCTTCCATGACTCTTA
GTTGCGTCTGTAACTAAATCTTTTATTGGCGGTGGCCGATAATTATCTCT
ATTCTTCAAGGTCGTTTCGTTAACACTTTGAATCATATTGGTGAATAAAT
TCAAGATATTTTGTAGTGAATTCTTAACATTGCTTTCGATCCCTTTTGCA
GTCTCTTTAAGCTTGGAATCCAAAGTAAGTTGTGTCTCTACCTTTGTCTT
GTTGAAGACCTGTTCAATAGCACTCATCGATAAAGTAGGCCGATATTGAT
GGCCCGGTTGAACCAGTTGTATGTTCTTCACATTGCGATACTCACGATTG
ATGCTGAATAATGAATCTTTGAAAATGATAATCAAAAGTAAAAATGCAAC
TACAAAGAATAATTTGCCTTGAGAATTCGACATTGTCTGTTGCCCAATCA
TGATTTTGTNGTTTATCACATTTTCACACGTTTTGTTAGCAGAAAATTCT
TTATACTTTATCAATTATCAGAATCTTGCAGTTGCCAAGTGATATTCCAT
TGAATTATTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00008614-exon-sc0000086-1575043694:436675..438235 | TCONS_00008614-exon-sc0000086-1575043694:436675..438235 | Clytia hemisphaerica | exon |
| TCONS_00008614-exon-sc0000086-1510915933:436675..438235 | TCONS_00008614-exon-sc0000086-1510915933:436675..438235 | Clytia hemisphaerica | exon |
| TCONS_00008614-exon-sc0000086-1491911889:436675..438235 | TCONS_00008614-exon-sc0000086-1491911889:436675..438235 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000086 | supercontig | sc0000086:436675..438235 - |
Blast
BLAST of TCONS_00008614 vs. Swiss-Prot (Human)
Match: B4GT5 (Beta-1,4-galactosyltransferase 5 OS=Homo sapiens GN=B4GALT5 PE=2 SV=1) HSP 1 Score: 216.853 bits (551), Expect = 3.931e-64 Identity = 108/286 (37.76%), Postives = 161/286 (56.29%), Query Frame = -3
Query: 132 EEFAVYRKTHCSAKDIQNCSTASSLIGPLAVNEANVSLDWLYE--NELKFVKKGGWWQPEDCKPKQSTLIVIPFRNRELQLPILLRQLHPILKRQKLHYRILVVEQTGQDKFNRAKLFNIGFDQGLKLFPYQCFIVHDVDLLPENDKIDYGCQVSPKHLSAGVSTMRYILPYNEIFGGVSSLWSKHYRQVNGATNLFYGWGGEDDNLYNRLRANGLTVHRHSISVARYKMLKHSNKNRPTGNEQSKLNQKLSNSNRYFAQDGLNTLQYDLVSVEEKPLYTHVKANL 983
E+F + C + S+ GP+ +N + + +D+++E ++ +K GG W+P DC P+ I+IPFRNR LP+L R L P+L+RQ+L + VVEQ G FNRA LFN+GF + +K + C I HDVD +PE+D+ YGC P+H + + Y+LPY E FGGVS L + +R++NG N F+GWGGEDD+L+NR++ G +V R +YK + H ++ + L L S DGLN L Y ++ LY ++ NL
Sbjct: 104 EDFTYFANHTCPER-------LPSMKGPIDINMSEIGMDYIHELFSKDPTIKLGGHWKPSDCMPRWKVAILIPFRNRHEHLPVLFRHLLPMLQRQRLQFAFYVVEQVGTQPFNRAMLFNVGFQEAMKDLDWDCLIFHDVDHIPESDRNYYGCGQMPRHFATKLDKYMYLLPYTEFFGGVSGLTVEQFRKINGFPNAFWGWGGEDDDLWNRVQNAGYSVSRPEGDTGKYKSIPHHHRGEVQFLGRYAL---LRKSKERQGLDGLNNLNY-FANITYDALYKNITVNL 378
The following BLAST results are available for this feature:
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