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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008599 ID=TCONS_00008599|Name=TCONS_00008599|organism=Clytia hemisphaerica|type=transcript|length=2424bp
CATTTTCGCTAAATACCACGTTTTTATGCAGCTAGCGTCGAGGAAGGTCT
GTTATTATTGTAGAAGAAGCATTTCATTTCTACAAAGGTTAAATATCGTG
ATCGTTAAATATTGTGATGGTATAAAAAACATTGGTATTGTAGGCAGGTA
CTAATTTTGGTTTTATCGGCACTTAATCGTGACACATTATCGACATTGTG
CCGACATCGCTTTGTGGCGTCGTCTTTAAAGTGTAAATTTCGGTAGCTCC
GAGAACCGACAATTGAGACAATAGCAATAGAAACTATTATCTAATCAAAC
AAAAGATTCTTGGACAATAAAACAATCGTTAACTTGTCGACAATAAAGGA
AAGAGGACAGaagtgaaaattattttatgcggttctattgttctataaac
aacCCATTGTTGTAAAGGAATTTTTTACGACTTCGCTGATAGGGAAGCta
tttatcaaaacaaagacgATATAGAATTTATTGATGAGAGAACAATAGAT
AAAACACAAAGTGATCAATAAAAGACAAAGAACTTTTATTACGTGAGAAT
CGCTACTTATCAGCTTGAGCTCTTTCGTAAAACATTTGAGCGATCAGAAC
TATTGTCGACTTGTCTTTATTCTCTTCCCTTTTCAAACCTTTGattattt
tgacaaatttgtcaaagaaaagaaaaatttgtcaaaatcttgtcaaaatt
atttaaaacattttcaagatCGGATTTTAAAAACCGGTTGCAACATTGTA
GCTGCAGAGGAAATCGTTGGACTTAGGAACTTTGGAATCTTATTAACata
tttcaatgattttgaCAGAAGTGGAGTTGTAAGTGTTACAATAATTTTGC
TGGCTTTCGTAAATTAAGCGTGAAAATACCAAAAGTTGTTTTTGTGATCC
TAAAGCTTTAACATTGAGGAAAATCGTGAATCGGAACAAATGGTTGCGAT
GTCGTTACTCATCGAGAATCTTTCATCCAGTATCGTCGGACACGATTTAC
ATTCACGACACCATCATGGAGGCTTGCGTGTGAAATCAGAATGCTCCGAT
CTTATCGATGGAATCGAGGATATGGAGAACGAGATTGTTATGACACGATC
GGGAAATACGACTTCCGTCATCGGATCACTCAGCGGCGTCAATTTATCCG
GAACTCTAGATCATCACAGCTCCAACTCCTCTACTAAAGACAATAATAAC
AATACTAATTCAAACAATAACAATTCTTCGAGCTCTTCGGCGAACGATAA
AGACACGGCGACAAACGATAAAGATCCTAACGTAAAACCACCATACAGCT
ACGTCGCTCTCATTGCAATGGCTATTAAAAACGCACCAGACAAACGCTTA
ACATTAAATCAAATCTACCAATTCATTATCGAGAAATTTCCATTTTacga
gaaaaacaaaaaaggatgGCAAAATTCGATTAGACATAATTTAAGCTTGA
ACGAATGTTTTATCAAAGTACCTCGCGAGGGAGGAGGTGAACGAAAAGGG
AACTATTGGACTTTGGACCCGGCATGCGAATACATGTTTGAGGACGGCAA
CTATCGACGTCGCCGACGAATGAAACGTCCTTATCGTCAATCGTCGCATT
ACCCCTACCCAAACGGATTTTACGGCGGTGACTTTAGGTACGGCGCGTAC
AGCTGTTACTCCTCAAACTGGCAAAGCCTCTATCATTCAGGAGCAACGTC
GCATCCAAACTGGCGAAACAGTACTTCATTTAACTACCCTAGTTCCTCTC
ATACCAGTAATTTCTCTTACATTGACCCGACTGCCCACCATAACCTACCA
GCAACAGGCTACGGGGCACCATACTACGGTACAAACAGTTCCTCATCAAG
TTTAGGAACAACCTATCAGGGAACTTACCAACCGCAGTACTACACAGGAG
CTACCTCCTCTACCTACGGAAGCTCGACCACTACCTACGGGAGCTCGATC
ACTACCCCTTCAACGGTAGGATACAGCCAATCAGCATACGCTACATCAAC
TACGGCATACAAAAGTGATTCACACCCTACCACCAATTATCACGAACAAT
ACTGGGCACAGCCTTCCTCATCAACGCCTTCCACTGGCGGCAACACCACC
CCACAAACTGGTGTCTTGAAATCGAACTATACTACAGACAGCCCGCCTTC
ACTTATGTAATTTTGTTATTGATAATTTTCGTTTCGGGGGAAGTTTACGT
AATTTACTACAATCCATATATACGTTTAACtaatacccagctggcacacg
acgttgtttaaacgttcatctaatgttatatggacgttgtgaatgttaga
taaacgtcgaaaaaaccttgtgtgccagctgggtaggtGAATTGACTATT
CTTAAAAACTAACGCTTCTTGTAGTCTTGTAGTCTCACtacatgaaaaaa
attatcttacTTTTGTGCTACCGC Run BLAST on NCBI protein sequence of TCONS_00008599-protein >TCONS_00008599-protein ID=TCONS_00008599-protein|Name=TCONS_00008599-protein|organism=Clytia hemisphaerica|type=polypeptide|length=406bp
MVAMSLLIENLSSSIVGHDLHSRHHHGGLRVKSECSDLIDGIEDMENEIV
MTRSGNTTSVIGSLSGVNLSGTLDHHSSNSSTKDNNNNTNSNNNNSSSSS
ANDKDTATNDKDPNVKPPYSYVALIAMAIKNAPDKRLTLNQIYQFIIEKF
PFYEKNKKGWQNSIRHNLSLNECFIKVPREGGGERKGNYWTLDPACEYMF
EDGNYRRRRRMKRPYRQSSHYPYPNGFYGGDFRYGAYSCYSSNWQSLYHS
GATSHPNWRNSTSFNYPSSSHTSNFSYIDPTAHHNLPATGYGAPYYGTNS
SSSSLGTTYQGTYQPQYYTGATSSTYGSSTTTYGSSITTPSTVGYSQSAY
ATSTTAYKSDSHPTTNYHEQYWAQPSSSTPSTGGNTTPQTGVLKSNYTTD
SPPSLM Run BLAST on NCBI transcript from alignment at sc0000086:106360..108864- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00008599 ID=TCONS_00008599|Name=TCONS_00008599|organism=Clytia hemisphaerica|type=transcript|length=2505bp|location=Sequence derived from alignment at sc0000086:106360..108864- (Clytia hemisphaerica)
CATTTTCGCTAAATACCACGTTTTTATGCAGCTAGCGTCGAGGAAGGTCT
GTTATTATTGTAGAAGAAGCATTTCATTTCTACAAAGGTTAAATATCGTG
ATCGTTAAATATTGTGATGGTATAAAAAACATTGGTATTGTAGGCAGGTA
CTAATTTTGGTTTTATCGGCACTTAATCGTGACACATTATCGACATTGTG
CCGACATCGCTTTGTGGCGTCGTCTTTAAAGTGTAAATTTCGGTAGCTCC
GAGAACCGACAATTGAGACAATAGCAATAGAAACTATTATCTAATCAAAC
AAAAGATTCTTGGACAATAAAACAATCGTTAACTTGTCGACAATAAAGGA
AAGAGGACAGAAGTGAAAATTATTTTATGCGGTTCTATTGTTCTATAAAC
AACCCATTGTTGTAAAGGAATTTTTTACGACTTCGCTGATAGGGAAGCTA
TTTATCAAAACAAAGACGATATAGAATTTATTGATGAGAGAACAATAGAT
AAAACACAAAGTGATCAATAAAAGACAAAGAACTTTTATTACGTGAGAAT
CGCTACTTATCAGCTTGAGCTCTTTCGTAAAACATTTGAGCGATCAGAAC
TATTGTCGACTTGTCTTTATTCTCTTCCCTTTTCAAACCTTTGATTATTT
TGACAAATTTGTCAAAGAAAAGAAAAATTTGTCAAAATCTTGTCAAAATT
ATTTAAAACATTTTCAAGATCGGATTTTAAAAACCGGTTGCAACATTGTA
GCTGCAGAGGAAATCGTTGGACTTAGGAACTTTGGAATCTTATTAACATA
TTTCAATGATTTTGACAGAAGTGGAGTTGTAAGTGTTACAATAATTTTGC
TGGCTTTCGTAAATTAAGCGTGAAAATACCAAAAGTTGTTTTTGTGATCC
TAAAGCTTTAACATTGAGGAAAATCGTGAATCGGAACAAATGGTTGCGAT
GTCGTTACTCATCGAGAATCTTTCATCCAGTATCGTCGGACACGATTTAC
ATTCACGACACCATCATGGAGGCTTGCGTGTGAAATCAGAATGCTCCGAT
CTTATCGATGGAATCGAGGATATGGAGAACGAGATTGTTATGACACGATC
GGGAAATACGACTTCCGTCATCGGATCACTCAGCGGCGTCAATTTATCCG
GAACTCTAGATCATCACAGCTCCAACTCCTCTACTAAAGACAATAATAAC
AATACTAATTCAAACAATAACAATTCTTCGAGCTCTTCGGCGAACGATAA
AGACACGGCGACAAACGATAAAGATCCTAACGTAAAACCACCATACAGCT
ACGTCGCTCTCATTGCAATGGCTATTAAAAACGCACCAGACAAACGCTTA
ACATTAAATCAAATCTACCAATTCATTATCGAGAAGTTTCCATTTTACGA
GAAANTTAAAAACGCACCAGACAAACGCCTAACATTAAATCAAATCTACC
AATTCATTATCGAGAAATTTCCATTTTACGAGAAAAACAAAAAAGGATGG
CAAAATTCGATTAGACATAATTTAAGCTTGAACGAATGTTTTATCAAAGT
ACCTCGCGAGGGAGGAGGTGAACGAAAAGGGAACTATTGGACTTTGGACC
CGGCATGCGAATACATGTTTGAGGACGGCAACTATCGACGTCGCCGACGA
ATGAAACGTCCTTATCGTCAATCGTCGCATTACCCCTACCCAAACGGATT
TTACGGCGGTGACTTTAGGTACGGCGCGTACAGCTGTTACTCCTCAAACT
GGCAAAGCCTCTATCATTCAGGAGCAACGTCGCATCCAAACTGGCGAAAC
AGTACTTCATTTAACTACCCTAGTTCCTCTCATACCAGTAATTTCTCTTA
CATTGACCCGACTGCCCACCATAACCTACCAGCAACAGGCTACGGGGCAC
CATACTACGGTACAAACAGTTCCTCATCAAGTTTAGGAACAACCTATCAG
GGAACTTACCAACCGCAGTACTACACAGGAGCTACCTCCTCTACCTACGG
AAGCTCGACCACTACCTACGGGAGCTCGATCACTACCCCTTCAACGGTAG
GATACAGCCAATCAGCATACGCTACATCAACTACGGCATACAAAAGTGAT
TCACACCCTACCACCAATTATCACGAACAATACTGGGCACAGCCTTCCTC
ATCAACGCCTTCCACTGGCGGCAACACCACCCCACAAACTGGTGTCTTGA
AATCGAACTATACTACAGACAGCCCGCCTTCACTTATGTAATTTTGTTAT
TGATAATTTTCGTTTCGGGGGAAGTTTACGTAATTTACTACAATCCATAT
ATACGTTTAACTAATACCCAGCTGGCACACGACGTTGTTTAAACGTTCAT
CTAATGTTATATGGACGTTGTGAATGTTAGATAAACGTCGAAAAAACCTT
GTGTGCCAGCTGGGTAGGTGAATTGACTATTCTTAAAAACTAACGCTTCT
TGTAGTCTTGTAGTCTCACTACATGAAAAAAATTATCTTACTTTTGTGCT
ACCGC Coding sequence (CDS) from alignment at sc0000086:106360..108864- >TCONS_00008599 ID=TCONS_00008599|Name=TCONS_00008599|organism=Clytia hemisphaerica|type=CDS|length=2442bp|location=Sequence derived from alignment at sc0000086:106360..108864- (Clytia hemisphaerica)
ATTAAATCAAATCTACCAATTCATTATCGAGAAATTTCCATTTTACGAGA
AAAACAAAAAAGGATGGCAAAATTCGATTAGACATAATTTAAGCTTGAAC
GAATGTTTTATCAAAGTACCTCGCGAGGGAGGAGGTGAACGAAAAGGGAA
CTATTGGACTTTGGACCCGGCATGCGAATACATGTTTGAGGACGGCAACT
ATCGACGTCGCCGACGAATGAAACGTCCTTATCGTCAATCGTCGCATTAC
CCCTACCCAAACGGATTTTACGGCGGTGACTTTAGGTACGGCGCGTACAG
CTGTTACTCCTCAAACTGGCAAAGCCTCTATCATTCAGGAGCAACGTCGC
ATCCAAACTGGCGAAACAGTACTTCATTTAACTACCCTAGTTCCTCTCAT
ACCAGTAATTTCTCTTACATTGACCCGACTGCCCACCATAACCTACCAGC
AACAGGCTACGGGGCACCATACTACGGTACAAACAGTTCCTCATCAAGTT
TAGGAACAACCTATCAGGGAACTTACCAACCGCAGTACTACACAGGAGCT
ACCTCCTCTACCTACGGAAGCTCGACCACTACCTACGGGAGCTCGATCAC
TACCCCTTCAACGGTAGGATACAGCCAATCAGCATACGCTACATCAACTA
CGGCATACAAAAGTGATTCACACCCTACCACCAATTATCACGAACAATAC
TGGGCACAGCCTTCCTCATCAACGCCTTCCACTGGCGGCAACACCACCCC
ACAAACTGGTGTCTTGAAATCGAACTATACTACAGACAGCCCGCCTTCAC
TTATGTAAATGGTTGCGATGTCGTTACTCATCGAGAATCTTTCATCCAGT
ATCGTCGGACACGATTTACATTCACGACACCATCATGGAGGCTTGCGTGT
GAAATCAGAATGCTCCGATCTTATCGATGGAATCGAGGATATGGAGAACG
AGATTGTTATGACACGATCGGGAAATACGACTTCCGTCATCGGATCACTC
AGCGGCGTCAATTTATCCGGAACTCTAGATCATCACAGCTCCAACTCCTC
TACTAAAGACAATAATAACAATACTAATTCAAACAATAACAATTCTTCGA
GCTCTTCGGCGAACGATAAAGACACGGCGACAAACGATAAAGATCCTAAC
GTAAAACCACCATACAGCTACGTCGCTCTCATTGCAATGGCTATTAAAAA
CGCACCAGACAAACGCTTAACATTAAATCAAATCTACCAATTCATTATCG
AGAAATTTCCATTTTACGAGAAAAACAAAAAAGGATGGCAAAATTCGATT
AGACATAATTTAAGCTTGAACGAATGTTTTATCAAAGTACCTCGCGAGGG
AGGAGGTGAACGAAAAGGGAACTATTGGACTTTGGACCCGGCATGCGAAT
ACATGTTTGAGGACGGCAACTATCGACGTCGCCGACGAATGAAACGTCCT
TATCGTCAATCGTCGCATTACCCCTACCCAAACGGATTTTACGGCGGTGA
CTTTAGGTACGGCGCGTACAGCTGTTACTCCTCAAACTGGCAAAGCCTCT
ATCATTCAGGAGCAACGTCGCATCCAAACTGGCGAAACAGTACTTCATTT
AACTACCCTAGTTCCTCTCATACCAGTAATTTCTCTTACATTGACCCGAC
TGCCCACCATAACCTACCAGCAACAGGCTACGGGGCACCATACTACGGTA
CAAACAGTTCCTCATCAAGTTTAGGAACAACCTATCAGGGAACTTACCAA
CCGCAGTACTACACAGGAGCTACCTCCTCTACCTACGGAAGCTCGACCAC
TACCTACGGGAGCTCGATCACTACCCCTTCAACGGTAGGATACAGCCAAT
CAGCATACGCTACATCAACTACGGCATACAAAAGTGATTCACACCCTACC
ACCAATTATCACGAACAATACTGGGCACAGCCTTCCTCATCAACGCCTTC
CACTGGCGGCAACACCACCCCACAAACTGGTGTCTTGAAATCGAACTATA
CTACAGACAGCCCGCCTTCACTTATGTAAATGGTTGCGATGTCGTTACTC
ATCGAGAATCTTTCATCCAGTATCGTCGGACACGATTTACATTCACGACA
CCATCATGGAGGCTTGCGTGTGAAATCAGAATGCTCCGATCTTATCGATG
GAATCGAGGATATGGAGAACGAGATTGTTATGACACGATCGGGAAATACG
ACTTCCGTCATCGGATCACTCAGCGGCGTCAATTTATCCGGAACTCTAGA
TCATCACAGCTCCAACTCCTCTACTAAAGACAATAATAACAATACTAATT
CAAACAATAACAATTCTTCGAGCTCTTCGGCGAACGATAAAGACACGGCG
ACAAACGATAAAGATCCTAACGTAAAACCACCATACAGCTACGTCGCTCT
CATTGCAATGGCTATTAAAAACGCACCAGACAAACGCTTAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00008599-exon-sc0000086-1575043694:107513..108864 | TCONS_00008599-exon-sc0000086-1575043694:107513..108864 | Clytia hemisphaerica | exon |
| TCONS_00008599-exon-sc0000086-1575043694:106360..107431 | TCONS_00008599-exon-sc0000086-1575043694:106360..107431 | Clytia hemisphaerica | exon |
| TCONS_00008599-exon-sc0000086-1510915933:107513..108864 | TCONS_00008599-exon-sc0000086-1510915933:107513..108864 | Clytia hemisphaerica | exon |
| TCONS_00008599-exon-sc0000086-1510915933:106360..107431 | TCONS_00008599-exon-sc0000086-1510915933:106360..107431 | Clytia hemisphaerica | exon |
| TCONS_00008599-exon-sc0000086-1491911889:107513..108864 | TCONS_00008599-exon-sc0000086-1491911889:107513..108864 | Clytia hemisphaerica | exon |
| TCONS_00008599-exon-sc0000086-1491911889:106360..107431 | TCONS_00008599-exon-sc0000086-1491911889:106360..107431 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000086 | supercontig | sc0000086:106360..108864 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003700 | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | sequence-specific DNA binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006355 | regulation of transcription, DNA-templated |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006355 |
regulation of transcription, DNA-templated |
| molecular_function |
GO:0043565 |
sequence-specific DNA binding |
| molecular_function |
GO:0003700 |
transcription factor activity, sequence-specific DNA binding |
Blast
BLAST of TCONS_00008599 vs. Swiss-Prot (Human)
Match: FOXL2 (Forkhead box protein L2 OS=Homo sapiens GN=FOXL2 PE=1 SV=1) HSP 1 Score: 179.104 bits (453), Expect = 3.431e-49 Identity = 81/94 (86.17%), Postives = 86/94 (91.49%), Query Frame = 1
Query: 1273 DPNVKPPYSYVALIAMAIKNAPDKRLTLNQIYQFIIEKFPFYEKNKKGWQNSIRHNLSLNECFIKVPREGGGERKGNYWTLDPACEYMFEDGNY 1554
DP KPPYSYVALIAMAI+ + +KRLTL+ IYQ+II KFPFYEKNKKGWQNSIRHNLSLNECFIKVPREGGGERKGNYWTLDPACE MFE GNY
Sbjct: 50 DPAQKPPYSYVALIAMAIRESAEKRLTLSGIYQYIIAKFPFYEKNKKGWQNSIRHNLSLNECFIKVPREGGGERKGNYWTLDPACEDMFEKGNY 143
The following BLAST results are available for this feature:
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