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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008546 ID=TCONS_00008546|Name=TCONS_00008546|organism=Clytia hemisphaerica|type=transcript|length=1326bp
actaTGATATGTTATTCATGTATTCAGTTGTTGTCAATGACATTGAAATG
ACTATAGCTACAAGTCTGGTCTCgataattttagtttgatgactAGCTTG
ATATAAacagaaattttgaataatttttctggGCTCAACATCAAAACTTC
CTGAGTGGCTTTTTCAACTGTGAAACACAAATATTGAATGTTTGGATGGT
GACAAAGACTCTagcttattttcattatttgtcctggattccttttgaaa
attacttcatttttattttagtgtCTCAGTACTAGAGTCATGCTCTTCAG
TATCAAAGGCAAGCCCAAAACTAGAGCTTCTTACATTTCATGGATTGGAA
ATTGGAACCAGCTTATATCATTTGTACCAATCGAAGAATGAAATATCAAt
gcttttattttttcttgtttaTTGTTAACAATCACGAGGCACATTTCGAT
TtatgtaattcttataaaaaaactgtgtACCCAGGATAGAATTTTACAAA
TACCATCTCTCAATTGCacttagaaaatttcaaaaatttttctttgcacT
CTTagagaaacaaaacaaatttttactgCATTTTGAGTGCCAGATACTGT
ATATAGCAGATCAAATTTTGTGAAATAATGGTCTTTTTTGCTTGATGCTT
ctaatttaaatcaaaattattcTTTGTTCGTAATTATAGAATCGTAACAA
TTTATGACCTTGAATTTGATTTCGAAACTTTTTGCACCAAACAAAAGATA
GATTTTTGAATTCTCTTTGCaaataaattttgttaaatataattatattt
ttttttcatttttatataaaCATTTTGCTTTTATCACCAATTAAGTATTT
TACAATGAAAAGCGTGCCAATTTTAtgataacttttgaagaaattaatga
caatgttttttaaataagtttATAGACTTTagtttttaaaactgttttac
tACCGCAaattacttttttatgatggaTAGTTGAAAATATCAAGTTGAGG
AAAGATGTTTCTCTACTCTTTTTGACTAATTGTTAGGGGGTCACTTTGCT
ACTTTTCCGATTCTTCAACACCACCGCCCCGCCCCCAATTTCACTTTATT
AGGACCCCTcccccattttatgactttttgcctcgaaattgcctaaaagt
gccaaaaaccttcattttcctggGGAAAATCACTAAATTCACTCCAATAT
CACTTTAATGTGacctccccccccccattttatgactttttgcctcgaaa
ttgcctaaaagtgccaaaaaccttcattttcctggGGAAAATCACTAAAT
TCACTCCAATATCACTTTAATGtgac Run BLAST on NCBI transcript from alignment at sc0000086:340510..343110+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00008546 ID=TCONS_00008546|Name=TCONS_00008546|organism=Clytia hemisphaerica|type=transcript|length=2601bp|location=Sequence derived from alignment at sc0000086:340510..343110+ (Clytia hemisphaerica)
actaTGATATGTTATTCATGTATTCAGTTGTTGTCAATGACATTGAAATG
ACTATAGCTACAAGTCTGGTCTCgataattttagtttgatgactAGCTTG
ATATAAacagaaattttgaataatttttctggGCTCAACATCAAAACTTC
CTGAGTGGCTTTTTCAACTGTGAAACACAAATATTGAATGTTTGGATGGT
GACAAAGACTCTagcttattttcattatttgtcctggattccttttgaaa
attacttcatttttattttagtgtCTCAGTACTAGAGTCATGCTCTTCAG
TATCAAAGGCAAGCCCAAAACTAGAGGTACACAAAAGTTTGTCAGGATCT
GcgacaaaatttttgattgcCTAAATGGGCAGTATCCTAACCAAGATATG
GCAACAAGAAAACCGGCAAAACCTGCTCTCAGACAGTTTATATGCACTGT
TTGATGAAATACGAAGCATTTATTAAGTGGCAAGCAATAGAAATTGCAAT
TGGTAATTTGAAATGCTTTCAGTGGGTTCGTTTAGACATCCTGGCATATG
TAATTGCtttcgattttcttttgtttcaattgTTATACACTATTGTTCAG
TTTaccaaatgcctaatgatgccagcgagCGGTAATTTGAAATGCCATTC
TGAGCTAAGGAATCGCCATTTCTGGCATTTCAAGCTAAACAAAGAAACTA
AAACAAAGAACAAAATTGACATTTGTGACTTGTTGAAGTGTCTGCACGCT
TTCTATTCAGGTTTTTCTATAAACTATAAAATTTGCATCTTTTGCTGTAT
CTCAAGGCTACGGCAAGCAGTGGGATaaacaatcaaaataaattctATTT
GGAGTAATTGGCAATATGCCAGGATATGTAAACGCAACCAGTTTCAGTTT
TAGAATAAAAGAATTGATAGTTAGATACTTTAAatattaaaactaaaatt
tgtaAAACGTAAACATTGACAAAATTGGAGAAAAGAGGGAGCGTCACTTA
ACATGTCCAATAAAATTTCCATCACGGATTACActctttatttttataag
aaccatgaaATTTGAGCTAAGGTCGTTGAGGCTCAAAccgtttttaaatt
tttacactttcagcctcaaattgttcttaatttgttcttattttttgagt
ttttttagcgggcattttttgttttgtttctattATTGCCCTATTTTTAC
CTTTGTTTGACGAAAAATAGACATTCCAGCCTTGgacttaaattgttctt
aattttttaccattttgaacctcattgttcttatataaaaagtgtAGTCC
GTGAACGGGCTGTCAAGATGTAAAAACTTttgattgacttgaaattaatC
TTTGAAATATAACATTGATAACTAACCACACATAAAAATTATACGGTACT
TTTCCGTGGCTTTCTTGCCACCGTaattttactttcgatttcgaccATCT
GTAACACGTAAACTTGCGCGGGTAAACGCGTTTTGAAATGTCGATTTAGA
CATTGTATCATATGAGCTTTTGAGGTTCCCACAACTACTCAATATCGTCT
GTATAATAATGCATTgaaccaaaattaaatttaattttgtttCTCGTTTA
GCTTCTTACATTTCATGGATTGGAAATTGGAACCAGCTTATATCATTTGT
ACCAATCGAAGAATGAAATATCAAtgcttttattttttcttgtttaTTGT
TAACAATCACGAGGCACATTTCGATTtatgtaattcttataaaaaaactg
tgtACCCAGGATAGAATTTTACAAATACCATCTCTCAATTGCacttagaa
aatttcaaaaatttttctttgcacTCTTagagaaacaaaacaaattttta
ctgCATTTTGAGTGCCAGATACTGTATATAGCAGATCAAATTTTGTGAAA
TAATGGTCTTTTTTGCTTGATGCTTctaatttaaatcaaaattattcTTT
GTTCGTAATTATAGAATCGTAACAATTTATGACCTTGAATTTGATTTCGA
AACTTTTTGCACCAAACAAAAGATAGATTTTTGAATTCTCTTTGCaaata
aattttgttaaatataattatatttttttttcatttttatataaaCATTT
TGCTTTTATCACCAATTAAGTATTTTACAATGAAAAGCGTGCCAATTTTA
tgataacttttgaagaaattaatgacaatgttttttaaataagtttATAG
ACTTTagtttttaaaactgttttactACCGCAaattacttttttatgatg
gaTAGTTGAAAATATCAAGTTGAGGAAAGATGTTTCTCTACTCTTTTTGA
CTAATTGTTAGGGGGTCACTTTGCTACTTTTCCGATTCTTCAACACCACC
GCCCCGCCCCCAATTTCACTTTATTAGGACCCCTcccccattttatgact
ttttgcctcgaaattgcctaaaagtgccaaaaaccttcattttcctggGG
AAAATCACTAAATTCACTCCAATATCACTTTAATGTGacctccccccccc
cattttatgactttttgcctcgaaattgcctaaaagtgccaaaaaccttc
attttcctggGGAAAATCACTAAATTCACTCCAATATCACTTTAATGtga
c
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00008546-exon-sc0000086-1491911889:340510..340835 | TCONS_00008546-exon-sc0000086-1491911889:340510..340835 | Clytia hemisphaerica | exon |
| TCONS_00008546-exon-sc0000086-1510915933:340510..340835 | TCONS_00008546-exon-sc0000086-1510915933:340510..340835 | Clytia hemisphaerica | exon |
| TCONS_00008546-exon-sc0000086-1575043694:340510..340835 | TCONS_00008546-exon-sc0000086-1575043694:340510..340835 | Clytia hemisphaerica | exon |
| TCONS_00008546-exon-sc0000086-1491911889:342111..343110 | TCONS_00008546-exon-sc0000086-1491911889:342111..343110 | Clytia hemisphaerica | exon |
| TCONS_00008546-exon-sc0000086-1510915933:342111..343110 | TCONS_00008546-exon-sc0000086-1510915933:342111..343110 | Clytia hemisphaerica | exon |
| TCONS_00008546-exon-sc0000086-1575043694:342111..343110 | TCONS_00008546-exon-sc0000086-1575043694:342111..343110 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000086 | supercontig | sc0000086:340510..343110 + |
Blast
The following BLAST results are available for this feature:
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