TCONS_00008518 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008518
Unique NameTCONS_00008518
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length423

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008518 ID=TCONS_00008518|Name=TCONS_00008518|organism=Clytia hemisphaerica|type=transcript|length=423bp
AGAGTGAAGACTTGCAATTTTGGGATTTTCGCCTGTGGTAAGTTAAAAGT
AAGCTAAGAAATCTTTCAACTTTGAAGTTAGATGAATTGAAAAGGTTTAG
AATTTAAAGCAATATTTGAATACTTTCTACGAATACTTTGGTTCAACGAA
ATTCGTTACATTTTTTCCATCAGATGTAAATATAATGACTTTATCTCGTG
AGATAAATACAACAAGTATACTTGAAGCACGATCAGATCCCCTCTCACTC
ACACACGTACCAAAAATCCCCACCGTTCATTTTTCATGACATTATGTGTG
AAatttaatttgtaaataaaaagatGAAGTTCTTATGAGAAACACAAAGG
AAGCCTTTGATGGTTGTAAACATGcaatattttctcaattttagttttta
aaaGGGTGTGGCAATCGAAACAT
Run BLAST on NCBI

transcript from alignment at sc0000085:581292..581714

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008518 ID=TCONS_00008518|Name=TCONS_00008518|organism=Clytia hemisphaerica|type=transcript|length=423bp|location=Sequence derived from alignment at sc0000085:581292..581714 (Clytia hemisphaerica)
ATGTTTCGATTGCCACACCCttttaaaaactaaaattgagaaaatattgC
ATGTTTACAACCATCAAAGGCTTCCTTTGTGTTTCTCATAAGAACTTCat
ctttttatttacaaattaaatTTCACACATAATGTCATGAAAAATGAACG
GTGGGGATTTTTGGTACGTGTGTGAGTGAGAGGGGATCTGATCGTGCTTC
AAGTATACTTGTTGTATTTATCTCACGAGATAAAGTCATTATATTTACAT
CTGATGGAAAAAATGTAACGAATTTCGTTGAACCAAAGTATTCGTAGAAA
GTATTCAAATATTGCTTTAAATTCTAAACCTTTTCAATTCATCTAACTTC
AAAGTTGAAAGATTTCTTAGCTTACTTTTAACTTACCACAGGCGAAAATC
CCAAAATTGCAAGTCTTCACTCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004767XLOC_004767Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008518-exon-sc0000085-1491911889:581292..581714TCONS_00008518-exon-sc0000085-1491911889:581292..581714Clytia hemisphaericaexon
TCONS_00008518-exon-sc0000085-1510915933:581292..581714TCONS_00008518-exon-sc0000085-1510915933:581292..581714Clytia hemisphaericaexon
TCONS_00008518-exon-sc0000085-1575043694:581292..581714TCONS_00008518-exon-sc0000085-1575043694:581292..581714Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000085supercontigsc0000085:581292..581714 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.165784	0.161665	0	0	0.447138	0.353334	0.639424	0.798161	0	0.173045	0	0	2.42567	4.80915	0.658963	0.101024	1.12008	2.04097	5.11073	5.16359	3.36607	3.04916	0.190084	0.691258	2.31393	2.5417	4.31913	2.18344	1.84007	2.43716
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00008518 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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