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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008442 ID=TCONS_00008442|Name=TCONS_00008442|organism=Clytia hemisphaerica|type=transcript|length=2327bpRun BLAST on NCBI protein sequence of TCONS_00008442-protein >TCONS_00008442-protein ID=TCONS_00008442-protein|Name=TCONS_00008442-protein|organism=Clytia hemisphaerica|type=polypeptide|length=260bp MSFDLNGKVALITGASSGIGKGTALYFAKNGARLAITGRKEDNLKEVAKERun BLAST on NCBI transcript from alignment at sc0000085:89302..98709- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00008442 ID=TCONS_00008442|Name=TCONS_00008442|organism=Clytia hemisphaerica|type=transcript|length=9408bp|location=Sequence derived from alignment at sc0000085:89302..98709- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000085:89302..98709- >TCONS_00008442 ID=TCONS_00008442|Name=TCONS_00008442|organism=Clytia hemisphaerica|type=CDS|length=7047bp|location=Sequence derived from alignment at sc0000085:89302..98709- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00008442 vs. Swiss-Prot (Human)
Match: DCXR (L-xylulose reductase OS=Homo sapiens GN=DCXR PE=1 SV=2) HSP 1 Score: 141.354 bits (355), Expect = 3.569e-37 Identity = 87/258 (33.72%), Postives = 135/258 (52.33%), Query Frame = 3
Query: 1179 MSFDLNGKVALITGASSGIGKGTALYFAKNGARLAITGRKEDNLKEVAKECEEVNPNKEKVLTLVGDLSKEEDTERTFKETINHFNQLDILVNSAGIVMNGTAESTSLQDYDLQMNINVRSIFHLTKLVIPHLIK--VKGNIVNVSSITGLRSFPGVSTYCMSKAAIDQYTRTTALELAPHQVRCNAVNPGVIVTQLHRRAGMSEEDYQKFLIKCQSTHALGRAGNVDEVASVIAFLASDSASFVTGATIPVDGGRHA 1946
M L G+ L+TGA GIG+GT GAR+ R + +L + +EC + P + DL E TER + +D+LVN+A + + + + +D +N+R++ ++++V LI V G IVNVSS R+ S YC +K A+D T+ ALEL PH++R NAVNP V++T + +A S+ K ++ + LG+ V+ V + I FL SD + TG+T+PV+GG A
Sbjct: 1 MELFLAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVRECPGIEP-------VCVDLGDWEATERA----LGSVGPVDLLVNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGVPGAIVNVSSQCSQRAVTNHSVYCSTKGALDMLTKVMALELGPHKIRVNAVNPTVVMTSMG-QATWSDPHKAKTML---NRIPLGKFAEVEHVVNAILFLLSDRSGMTTGSTLPVEGGFWA 243 The following BLAST results are available for this feature:
BLAST of TCONS_00008442 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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