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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008368 ID=TCONS_00008368|Name=TCONS_00008368|organism=Clytia hemisphaerica|type=transcript|length=1849bp
ccagcggcacgtcacCGTCAGTCGTCAAGGTcaatgccccccccccgggc
ttcgTGTAGATTTCTGAGTACACCTACCAAGgacaataaaaaatatgaaa
actagCCTGTAGATATACCCTATAATTTCTTCTCttatatactgatggca
aaATGAATTAGTATGGTTTGGCCTGAAAGTTTTCTCCTGTCTTAATGAAA
ACAGGAgacttttcatattttgatttaatgaTGAGCGCGTGGTACTTCCA
TGATGACTATCAGAATTATAATGCAAAGGAACTGGGGACGAGTTTAAGGA
GACATTAATATCATACTAGGGAAATTTGGTCAGTAAAACGCCGGGAAAAC
TCCCACTAGAAGACACTAGTAGGCAGACAAACAAACAATAAGGCTAGAAA
TAAGTAGAGAGATAGAACGACAACGGCTATAAGAGTACTTTAACCTTCAA
GCAGACGCAACTCGTAAATATAATGTTCAACAAACGTCTATAATCAGACA
CCTTCAAATGCCGAACAGACACAACACATCATGTCCATACAACGTTCATC
TGATGTCGCTATATGATTACTATGGAACGTTGAATGGACATTTTGATGCT
TTGTATTCGTTTGGTATTTGAGAAGGAGGCTGATCTCCTATATAGAATTG
AATTTGACTTTCCATGAATTTCTGGGACAACGCCCACACCctgtaaataa
acaaacaaatacctcaatatcaaaaattttcgcTTGTTTATAATCCAGGA
AGGGACACAACTATCTTTCATAGGAAACGTCACGTAAATTAACTATGATT
AGCTTggcattttttacttttcaccTTTTGACCTTTAATTTTCTTTAGAG
TACCGCATTTCATAAGATTGTAACGCCGTTGACTTAACTACTTTTTCTAG
TCGGGTTGGCAGCCGATCAaaagtaacaaaagaaaatctttaataATGAG
GATCTAGCGTAATAATCTCAAAAACGatcttcaagaaattttaaaggttt
tatttttacataagtgtttcatatcagatacaTATAAGGGCGGTGTCTGC
CTATTATTATAATATGCTGATATAAGNTACAACGTTCATCTGATGTCGCT
ATATGATTACTATGGAACGTTGAATGGACATTTTGATGCTTTGTATTCGT
TTGGTATTTGAGAAGGAGGCTGATCTCCTATATAGAATTGAATTTGACTT
TCCATGAATTTCTGGGACAACGCCCACACCctgtaaataaacaaacaaat
acctcaatatcaaaaattttcgcTTGTTTATAATCCAGGAAGGGACACAA
CTATCTTTCATAGGAAACGTCACGTAAATTAACTATGATTAGCTTggcat
tttttacttttcaccTTTTGACCTTTAATTTTCTTTAGAGTACCGCATTT
CATAAGATTGTAACGCCGTTGACTTAACTACTTTTTCTAGTCGGGTTGGC
AGCCGATCAaaagtaacaaaagaaaatctttaataATGAGGATCTAGCGT
AATAATCTCAAAAACGatcttcaagaaattttaaaggttttatttttaca
taagtgtttcatatcagatacaTATAAGGGCGGTGTCTGCCTAttattat
attatgctgatatacccaaaaaaaggtttttcttttcctatttctggaac
aatcttgctccacatacgcgtcaattcaatgtgaaaaagcttgtgaatta
aaatttgacaagtaagcaaacgatatcagtcttatttaaaaacaaaacct
ttaagagttACTAGTAATACTGATTTTGCACTTTTACCCTACAACAAGTT
AAAAGTTTACCGGTTCAATTATTGATTTATATCATCCATCGAAAGTTCA Run BLAST on NCBI transcript from alignment at sc0000084:462143..463991 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00008368 ID=TCONS_00008368|Name=TCONS_00008368|organism=Clytia hemisphaerica|type=transcript|length=1849bp|location=Sequence derived from alignment at sc0000084:462143..463991 (Clytia hemisphaerica)
TGAACTTTCGATGGATGATATAAATCAATAATTGAACCGGTAAACTTTTA
ACTTGTTGTAGGGTAAAAGTGCAAAATCAGTATTACTAGTaactcttaaa
ggttttgtttttaaataagactgatatcgtttgcttacttgtcaaatttt
aattcacaagctttttcacattgaattgacgcgtatgtggagcaagattg
ttccagaaataggaaaagaaaaacctttttttgggtatatcagcataata
taataaTAGGCAGACACCGCCCTTATAtgtatctgatatgaaacacttat
gtaaaaataaaacctttaaaatttcttgaagatCGTTTTTGAGATTATTA
CGCTAGATCCTCATtattaaagattttcttttgttactttTGATCGGCTG
CCAACCCGACTAGAAAAAGTAGTTAAGTCAACGGCGTTACAATCTTATGA
AATGCGGTACTCTAAAGAAAATTAAAGGTCAAAAggtgaaaagtaaaaaa
tgccAAGCTAATCATAGTTAATTTACGTGACGTTTCCTATGAAAGATAGT
TGTGTCCCTTCCTGGATTATAAACAAgcgaaaatttttgatattgaggta
tttgtttgtttatttacagGGTGTGGGCGTTGTCCCAGAAATTCATGGAA
AGTCAAATTCAATTCTATATAGGAGATCAGCCTCCTTCTCAAATACCAAA
CGAATACAAAGCATCAAAATGTCCATTCAACGTTCCATAGTAATCATATA
GCGACATCAGATGAACGTTGTANCTTATATCAGCATATTATAATAATAGG
CAGACACCGCCCTTATAtgtatctgatatgaaacacttatgtaaaaataa
aacctttaaaatttcttgaagatCGTTTTTGAGATTATTACGCTAGATCC
TCATtattaaagattttcttttgttactttTGATCGGCTGCCAACCCGAC
TAGAAAAAGTAGTTAAGTCAACGGCGTTACAATCTTATGAAATGCGGTAC
TCTAAAGAAAATTAAAGGTCAAAAggtgaaaagtaaaaaatgccAAGCTA
ATCATAGTTAATTTACGTGACGTTTCCTATGAAAGATAGTTGTGTCCCTT
CCTGGATTATAAACAAgcgaaaatttttgatattgaggtatttgtttgtt
tatttacagGGTGTGGGCGTTGTCCCAGAAATTCATGGAAAGTCAAATTC
AATTCTATATAGGAGATCAGCCTCCTTCTCAAATACCAAACGAATACAAA
GCATCAAAATGTCCATTCAACGTTCCATAGTAATCATATAGCGACATCAG
ATGAACGTTGTATGGACATGATGTGTTGTGTCTGTTCGGCATTTGAAGGT
GTCTGATTATAGACGTTTGTTGAACATTATATTTACGAGTTGCGTCTGCT
TGAAGGTTAAAGTACTCTTATAGCCGTTGTCGTTCTATCTCTCTACTTAT
TTCTAGCCTTATTGTTTGTTTGTCTGCCTACTAGTGTCTTCTAGTGGGAG
TTTTCCCGGCGTTTTACTGACCAAATTTCCCTAGTATGATATTAATGTCT
CCTTAAACTCGTCCCCAGTTCCTTTGCATTATAATTCTGATAGTCATCAT
GGAAGTACCACGCGCTCAtcattaaatcaaaatatgaaaagtcTCCTGTT
TTCATTAAGACAGGAGAAAACTTTCAGGCCAAACCATACTAATTCATttt
gccatcagtatataaGAGAAGAAATTATAGGGTATATCTACAGGctagtt
ttcatattttttattgtcCTTGGTAGGTGTACTCAGAAATCTACAcgaag
cccggggggggggcattgACCTTGACGACTGACGgtgacgtgccgctgg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00008368-exon-sc0000084-1491911889:462143..463991 | TCONS_00008368-exon-sc0000084-1491911889:462143..463991 | Clytia hemisphaerica | exon |
| TCONS_00008368-exon-sc0000084-1510915933:462143..463991 | TCONS_00008368-exon-sc0000084-1510915933:462143..463991 | Clytia hemisphaerica | exon |
| TCONS_00008368-exon-sc0000084-1575043694:462143..463991 | TCONS_00008368-exon-sc0000084-1575043694:462143..463991 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000084 | supercontig | sc0000084:462143..463991 . |
Blast
The following BLAST results are available for this feature:
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