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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008303 ID=TCONS_00008303|Name=TCONS_00008303|organism=Clytia hemisphaerica|type=transcript|length=1470bp
CATGGAAAAGGAAATGGTAGACTAAGCTGTAGGTGTATAAATAAGGGTGT
aagttgagtttgaaaatcaaatcaGCTTTGGTTCAGTTTGGCTTTCTTGA
TTAAGAAAGAACATCTGAACGCTTTGTGCTTTTTTGTGTTGGTTGGTCGA
CGAACGAAACTTTGCGATTCTACTTATTTGATATCATTTGctgttaaaaa
aagaagaaatcatttCTTGCACGTATTTTTGACGATAAATAGTACACTCA
AGTAGATCGAGATGGTTTCTATTATCAAAGCCCTTCTTTTTTCATCACTC
CTCATTGTGATTACTGAAGCCTGTCAAGATACTGATCCAAATTGTAAACG
ATATTTGAGTTATTGTAACCAAGGTAACGGATGGATGGAAGTAAAATGTC
GCAAAACGTGTGGTTATTGTGACGATGGAAAgacaactacaacaaccacc
ACTACTACGACGACCACTGCTGCACCTAAAGGAAATTGTGTGGATAATGA
CAATGATTGCGCCAAATGGAAACGATATTGTGCAAAAAGTGGTTACATGA
AAAGAGAATGTAAAAGAACTTGTGGTTTTTGCACTGGAGGTGGTAAAACA
ACGACCACCACTACTACTAAAGCACCAAAAACAACGACCACCACTACTCA
AAAGCCAAAGACAACCACCACTACTCAAGCACCAAAAACAACGACCACCA
CAAAGAGACCTACGACCACCACAACAGCCACTACGACCACCACCAAAAAG
CCTACGACCACCACTAAGAAAACAACTACGACCACCACCAAAAAGCCAAC
GACCACCACAACAGCAACTACGACCACAACCAAAAAGCCAACGACCACAA
CTGCAACTACAACGACCACCAAAAGACCTGTCAATCCACCATCAGGAGGA
TGTGGTGACAAAGAACCATTTTGTTTTATGAGCATGTTCAACAAAAATCA
ACATTGTGGAAAATATGGTCACGTTTGCATCAAATCTTGTGGACGATGTA
ATGGCCCTGATAACCAGAAATGCTCCAATCTGAAAGATCGTGCTCCAAAT
TCATTCTGTGGTAACAAAGATTGTCAAGCGAGTAACCCATTGGATAAACA
CAGAGCTCATGTTAAATGCACACGCACGTGTTGCGATAAGAATCAACTTA
ATTAAGGATGAGATGAAATTAGTTCCATTTATACTTAGAcgaaaaatcgt
ctgagacgagtagtttgtaaaatgtgatctgtggaggagatcctatttat
tgaaacatgaatggaaagtaAACTCTtcataatgctcattttctaaattg
ctcgtcgcagacaaattaatcgtctcagtataaatagaactatCACCTTG
CACAAGTACAATTAGCAGTTATTATTAATATCACGAAGAATGCTAATTTT
GTGCTAATTTCtgtcaaaaattaatttcaaattaatgTTTACTTTTTGTG
CTAAACCAatgctttttaac Run BLAST on NCBI protein sequence of TCONS_00008303-protein >TCONS_00008303-protein ID=TCONS_00008303-protein|Name=TCONS_00008303-protein|organism=Clytia hemisphaerica|type=polypeptide|length=297bp
MVSIIKALLFSSLLIVITEACQDTDPNCKRYLSYCNQGNGWMEVKCRKTC
GYCDDGKTTTTTTTTTTTTAAPKGNCVDNDNDCAKWKRYCAKSGYMKREC
KRTCGFCTGGGKTTTTTTTKAPKTTTTTTQKPKTTTTTQAPKTTTTTKRP
TTTTTATTTTTKKPTTTTKKTTTTTTKKPTTTTTATTTTTKKPTTTTATT
TTTKRPVNPPSGGCGDKEPFCFMSMFNKNQHCGKYGHVCIKSCGRCNGPD
NQKCSNLKDRAPNSFCGNKDCQASNPLDKHRAHVKCTRTCCDKNQLN Run BLAST on NCBI transcript from alignment at sc0000084:16858..19348- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00008303 ID=TCONS_00008303|Name=TCONS_00008303|organism=Clytia hemisphaerica|type=transcript|length=2491bp|location=Sequence derived from alignment at sc0000084:16858..19348- (Clytia hemisphaerica)
CATGGAAAAGGAAATGGTAGACTAAGCTGTAGGTGTATAAATAAGGGTGT
AAGTTGAGTTTGAAAATCAAATCAGCTTTGGTTCAGTTTGGCTTTCTTGA
TTAAGAAAGAACATCTGAACGCTTTGTGCTTTTTTGTGTTGGTTGGTCGA
CGAACGAAACTTTGCGATTCTACTTATTTGATATCATTTGCTGTTAAAAA
AAGAAGAAATCATTTCTTGCACGTATTTTTGACGATAAATAGTACACTCA
AGTAGATCGAGATGGTTTCTATTATCAAAGCCCTTCTTTTTTCATCACTC
CTCATTGGTAAGTTTCTTTGTATTTTGCTATCTTGAAAATGGAATGAAAA
GGATCTATAGTGACTGACCCACTGACCTTTATATATCTCTGGACCAAGTT
ATTCAATCCCGGCCAAGCAAAAATCTTTGATCAGAGGTGGATATAGCTTG
GTCTAGGGATATATGAAGGTCAGTTAACTGGTCCGGAATGAGAGGGATGT
AATTAAAGTATTGATTATCAATTGTTTTTATCTCATCCATCAATTATAGT
GATTACTGAAGCCTGTCAAGATACTGATCCAAATTGTAAACGATATTTGA
GTTATTGTAACCAAGGTAACGGATGGATGGAAGTAAAATGTCGCAAAACG
TGTGGTTATTGTGACGATGGAAAGACAACTACAACAACCACCACTACTAC
GACGACCACTGCTGCACCTAAAGGTCTGAATTTTCTGTCATGCGAATTTC
TATCTCACCGAAATCTTTACGCTTCAAATTTTACCAAACTCCAATAAAAA
TCCTAGACAGCTTACTTTTTGTCCGTCAATTGTTACTGTGAATAAAATTC
GTCAATCTAAATCATGCGATTTTGTGTCAATACAAAAACTTCTTTATCAA
GATTCTAACAGCCAACTTTCTGCCGATTTTTTACCCACTCTAACAAATAG
TATAGACAAGCCAGCCGTAGAAATCACCATTGTATTATTTTGCTTTCACA
TTTATTTCGATCTTCAAATGTTCAAAGTCATATTTGTACCAATTGCTTCT
AAATTATAGGAAATTGTGTGGATAATGACAATGATTGCGCCAAATGGAAA
CGATATTGTGCAAAAAGTGGTTACATGAAAAGAGAATGTAAAAGAACTTG
TGGTTTTTGCACTGGAGGTGGTAAAACAACGACCACCACTACTACTAAAG
CACCAAAAACAACGACCACCACTACTCAAAAGCCAAAGACAACCACCACT
ACTCAAGCACCAAAAACAACGACCACCACAAAGAGACCTACGACCACCAC
AACAGCCACTACGACCACCACCAAAAAGCCTACGACCACCACTAAGAAAA
CAACTACGACCACCACCAAAAAGCCAACGACCACCACAACAGCAACTACG
ACCACAACCAAAAAGCCAACGACCACAACTGCAACTACAACGACCACCAA
AAGACCTGTCAATCCACCATCAGGAGGTAAATATTTCAGATTATTTTTTA
TGACATCGAAAAGAACAAAAATAACTATGGAAAAAACCGCAAAAAAACCT
TTTTTTTAAATCTTCATGAACTTTAACTTCTATTACTCTAAATTTCCTCA
ATTCGAACAAATTTTCGTTCCCCATGGACTTTCGAGTTATGGATACCCTA
TTGTAGTAGGCCTCTGTGTTATACAAAACTTCATCTTGTGGTCTTGTGAT
TTCAAACCATCTGTTAATTCCTTATATAAGACCATGTTCGCACGTAGGGG
TTCTGTTTCGCTCCGAAACGGAATGAAGCCATTATGTTGGTTAAAATTGA
CGTAAATCTTAGCTTAATCAATAGAATGGCTTCATTTCGTTTCGGAGCGA
AACGGAACCGTCACGTGTGAACGTGGTCTAAAGCATGTCAATCCATTCGA
ATCTTTTTTCATTATCTAGGATGTGGTGACAAAGAACCATTTTGTTTTAT
GAGCATGTTCAACAAAAATCAACATTGTGGAAAATATGGTCACGTTTGCA
TCAAATCTTGTGGACGATGTAATGGCCCTGATAACCAGAAATGCTCCAAT
CTGAAAGATCGTGCTCCAAATTCATTCTGTGGTAACAAAGATTGTCAAGC
GAGTAACCCATTGGATAAACACAGAGCTCATGTTAAATGCACACGCACGT
GTTGCGATAAGAATCAACTTAATTAAGGATGAGATGAAATTAGTTCCATT
TATACTTAGACGAAAAATCGTCTGAGACGAGTAGTTTGTAAAATGTGATC
TGTGGAGGAGATCCTATTTATTGAAACATGAATGGAAAGTAAACTCTTCA
TAATGCTCATTTTCTAAATTGCTCGTCGCAGACAAATTAATCGTCTCAGT
ATAAATAGAACTATCACCTTGCACAAGTACAATTAGCAGTTATTATTAAT
ATCACGAAGAATGCTAATTTTGTGCTAATTTCTGTCAAAAATTAATTTCA
AATTAATGTTTACTTTTTGTGCTAAACCAATGCTTTTTAAC Coding sequence (CDS) from alignment at sc0000084:16858..19348- >TCONS_00008303 ID=TCONS_00008303|Name=TCONS_00008303|organism=Clytia hemisphaerica|type=CDS|length=3576bp|location=Sequence derived from alignment at sc0000084:16858..19348- (Clytia hemisphaerica)
GATGTGGTGACAAAGAACCATTTTGTTTTATGAGCATGTTCAACAAAAAT
CAACATTGTGGAAAATATGGTCACGTTTGCATCAAATCTTGTGGACGATG
TAATGGCCCTGATAACCAGAAATGCTCCAATCTGAAAGATCGTGCTCCAA
ATTCATTCTGTGGTAACAAAGATTGTCAAGCGAGTAACCCATTGGATAAA
CACAGAGCTCATGTTAAATGCACACGCACGTGTTGCGATAAGAATCAACT
TAATTAAGAAATTGTGTGGATAATGACAATGATTGCGCCAAATGGAAACG
ATATTGTGCAAAAAGTGGTTACATGAAAAGAGAATGTAAAAGAACTTGTG
GTTTTTGCACTGGAGGTGGTAAAACAACGACCACCACTACTACTAAAGCA
CCAAAAACAACGACCACCACTACTCAAAAGCCAAAGACAACCACCACTAC
TCAAGCACCAAAAACAACGACCACCACAAAGAGACCTACGACCACCACAA
CAGCCACTACGACCACCACCAAAAAGCCTACGACCACCACTAAGAAAACA
ACTACGACCACCACCAAAAAGCCAACGACCACCACAACAGCAACTACGAC
CACAACCAAAAAGCCAACGACCACAACTGCAACTACAACGACCACCAAAA
GACCTGTCAATCCACCATCAGGAGTGATTACTGAAGCCTGTCAAGATACT
GATCCAAATTGTAAACGATATTTGAGTTATTGTAACCAAGGTAACGGATG
GATGGAAGTAAAATGTCGCAAAACGTGTGGTTATTGTGACGATGGAAAGA
CAACTACAACAACCACCACTACTACGACGACCACTGCTGCACCTAAAGAT
GGTTTCTATTATCAAAGCCCTTCTTTTTTCATCACTCCTCATTGGATGTG
GTGACAAAGAACCATTTTGTTTTATGAGCATGTTCAACAAAAATCAACAT
TGTGGAAAATATGGTCACGTTTGCATCAAATCTTGTGGACGATGTAATGG
CCCTGATAACCAGAAATGCTCCAATCTGAAAGATCGTGCTCCAAATTCAT
TCTGTGGTAACAAAGATTGTCAAGCGAGTAACCCATTGGATAAACACAGA
GCTCATGTTAAATGCACACGCACGTGTTGCGATAAGAATCAACTTAATTA
AGAAATTGTGTGGATAATGACAATGATTGCGCCAAATGGAAACGATATTG
TGCAAAAAGTGGTTACATGAAAAGAGAATGTAAAAGAACTTGTGGTTTTT
GCACTGGAGGTGGTAAAACAACGACCACCACTACTACTAAAGCACCAAAA
ACAACGACCACCACTACTCAAAAGCCAAAGACAACCACCACTACTCAAGC
ACCAAAAACAACGACCACCACAAAGAGACCTACGACCACCACAACAGCCA
CTACGACCACCACCAAAAAGCCTACGACCACCACTAAGAAAACAACTACG
ACCACCACCAAAAAGCCAACGACCACCACAACAGCAACTACGACCACAAC
CAAAAAGCCAACGACCACAACTGCAACTACAACGACCACCAAAAGACCTG
TCAATCCACCATCAGGAGTGATTACTGAAGCCTGTCAAGATACTGATCCA
AATTGTAAACGATATTTGAGTTATTGTAACCAAGGTAACGGATGGATGGA
AGTAAAATGTCGCAAAACGTGTGGTTATTGTGACGATGGAAAGACAACTA
CAACAACCACCACTACTACGACGACCACTGCTGCACCTAAAGATGGTTTC
TATTATCAAAGCCCTTCTTTTTTCATCACTCCTCATTGGATGTGGTGACA
AAGAACCATTTTGTTTTATGAGCATGTTCAACAAAAATCAACATTGTGGA
AAATATGGTCACGTTTGCATCAAATCTTGTGGACGATGTAATGGCCCTGA
TAACCAGAAATGCTCCAATCTGAAAGATCGTGCTCCAAATTCATTCTGTG
GTAACAAAGATTGTCAAGCGAGTAACCCATTGGATAAACACAGAGCTCAT
GTTAAATGCACACGCACGTGTTGCGATAAGAATCAACTTAATTAAGAAAT
TGTGTGGATAATGACAATGATTGCGCCAAATGGAAACGATATTGTGCAAA
AAGTGGTTACATGAAAAGAGAATGTAAAAGAACTTGTGGTTTTTGCACTG
GAGGTGGTAAAACAACGACCACCACTACTACTAAAGCACCAAAAACAACG
ACCACCACTACTCAAAAGCCAAAGACAACCACCACTACTCAAGCACCAAA
AACAACGACCACCACAAAGAGACCTACGACCACCACAACAGCCACTACGA
CCACCACCAAAAAGCCTACGACCACCACTAAGAAAACAACTACGACCACC
ACCAAAAAGCCAACGACCACCACAACAGCAACTACGACCACAACCAAAAA
GCCAACGACCACAACTGCAACTACAACGACCACCAAAAGACCTGTCAATC
CACCATCAGGAGTGATTACTGAAGCCTGTCAAGATACTGATCCAAATTGT
AAACGATATTTGAGTTATTGTAACCAAGGTAACGGATGGATGGAAGTAAA
ATGTCGCAAAACGTGTGGTTATTGTGACGATGGAAAGACAACTACAACAA
CCACCACTACTACGACGACCACTGCTGCACCTAAAGATGGTTTCTATTAT
CAAAGCCCTTCTTTTTTCATCACTCCTCATTGGATGTGGTGACAAAGAAC
CATTTTGTTTTATGAGCATGTTCAACAAAAATCAACATTGTGGAAAATAT
GGTCACGTTTGCATCAAATCTTGTGGACGATGTAATGGCCCTGATAACCA
GAAATGCTCCAATCTGAAAGATCGTGCTCCAAATTCATTCTGTGGTAACA
AAGATTGTCAAGCGAGTAACCCATTGGATAAACACAGAGCTCATGTTAAA
TGCACACGCACGTGTTGCGATAAGAATCAACTTAATTAAGAAATTGTGTG
GATAATGACAATGATTGCGCCAAATGGAAACGATATTGTGCAAAAAGTGG
TTACATGAAAAGAGAATGTAAAAGAACTTGTGGTTTTTGCACTGGAGGTG
GTAAAACAACGACCACCACTACTACTAAAGCACCAAAAACAACGACCACC
ACTACTCAAAAGCCAAAGACAACCACCACTACTCAAGCACCAAAAACAAC
GACCACCACAAAGAGACCTACGACCACCACAACAGCCACTACGACCACCA
CCAAAAAGCCTACGACCACCACTAAGAAAACAACTACGACCACCACCAAA
AAGCCAACGACCACCACAACAGCAACTACGACCACAACCAAAAAGCCAAC
GACCACAACTGCAACTACAACGACCACCAAAAGACCTGTCAATCCACCAT
CAGGAGTGATTACTGAAGCCTGTCAAGATACTGATCCAAATTGTAAACGA
TATTTGAGTTATTGTAACCAAGGTAACGGATGGATGGAAGTAAAATGTCG
CAAAACGTGTGGTTATTGTGACGATGGAAAGACAACTACAACAACCACCA
CTACTACGACGACCACTGCTGCACCTAAAGATGGTTTCTATTATCAAAGC
CCTTCTTTTTTCATCACTCCTCATTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00008303-exon-sc0000084-1575043694:19042..19348 | TCONS_00008303-exon-sc0000084-1575043694:19042..19348 | Clytia hemisphaerica | exon |
| TCONS_00008303-exon-sc0000084-1575043694:18626..18799 | TCONS_00008303-exon-sc0000084-1575043694:18626..18799 | Clytia hemisphaerica | exon |
| TCONS_00008303-exon-sc0000084-1575043694:17873..18289 | TCONS_00008303-exon-sc0000084-1575043694:17873..18289 | Clytia hemisphaerica | exon |
| TCONS_00008303-exon-sc0000084-1575043694:16858..17429 | TCONS_00008303-exon-sc0000084-1575043694:16858..17429 | Clytia hemisphaerica | exon |
| TCONS_00008303-exon-sc0000084-1510915933:19042..19348 | TCONS_00008303-exon-sc0000084-1510915933:19042..19348 | Clytia hemisphaerica | exon |
| TCONS_00008303-exon-sc0000084-1510915933:18626..18799 | TCONS_00008303-exon-sc0000084-1510915933:18626..18799 | Clytia hemisphaerica | exon |
| TCONS_00008303-exon-sc0000084-1510915933:17873..18289 | TCONS_00008303-exon-sc0000084-1510915933:17873..18289 | Clytia hemisphaerica | exon |
| TCONS_00008303-exon-sc0000084-1510915933:16858..17429 | TCONS_00008303-exon-sc0000084-1510915933:16858..17429 | Clytia hemisphaerica | exon |
| TCONS_00008303-exon-sc0000084-1491911889:19042..19348 | TCONS_00008303-exon-sc0000084-1491911889:19042..19348 | Clytia hemisphaerica | exon |
| TCONS_00008303-exon-sc0000084-1491911889:18626..18799 | TCONS_00008303-exon-sc0000084-1491911889:18626..18799 | Clytia hemisphaerica | exon |
| TCONS_00008303-exon-sc0000084-1491911889:17873..18289 | TCONS_00008303-exon-sc0000084-1491911889:17873..18289 | Clytia hemisphaerica | exon |
| TCONS_00008303-exon-sc0000084-1491911889:16858..17429 | TCONS_00008303-exon-sc0000084-1491911889:16858..17429 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000084 | supercontig | sc0000084:16858..19348 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR003582 | ShKT_dom |
Blast
The following BLAST results are available for this feature:
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