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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008290 ID=TCONS_00008290|Name=TCONS_00008290|organism=Clytia hemisphaerica|type=transcript|length=1539bp
TTCAGTAATAAAAGATgaataaaagtgaaaataaaaatgaaaatgaatca
aATACAATATGGAGCTTCCATCATGAAGAGCTGTGCATCGATGCAAATTT
TCCTAAGCTCGGTGGTGTTTGCTTTTAAGGAGGGTTGCTTTTCCTTTTGA
CAATTCCTCAAGAAAATGATTTATGATGGAAAAAAGTGGCTGGATATTTC
TTATCTTTGAAAACTGCTGATGTATAAGttgtGAAAGCAGTTGGAAAACG
TGGTGACCACATTTCCATTTGTTGTTGATACGATATAACGTTGTGAAGAT
TTCATTTGGTTGGTTTTCTTGACTTCAACGATAGTAATAAAGAACGAATA
AAACACACAATTGTCAAGATGACTTCAGACGACCTGCAACAAAAGCTTCT
GCAATACATCAACGAGGCGCGCTCAAAACCTGCACTCATGGCCGCCAAAT
TCAGTTTACTCTCAGAAATCGACCCAACTCTTTATAACAAACTATTCAAA
TATGCGTCCGAATTATTAGACGTTTTGTCCGAAATTGACAATCCTGGTAT
CAAATTTTCGGACATTTACACTATATTGTCAAGTCCGCATAATGATGTAC
AATCAACCGTCAAGTTATCGTTATACATGTATAAATTACGGACCGGAACC
ATAACAGATTCGGAATTAGAGGACCAGCTTGCAAACACGTTTAACGAAAA
CAGTGTCAAGGAACTTATCTGTAAAGGAATTGCTTCTTTGTATTGTGAAC
ATTACGGAAATGCATTCGCTTACCTGTCAGATGCTTGCGAACAAGATGTG
CACACCGCGCGGTCAATCTTGTCCGCTTTTACTGTACCGTTTTTGAACTC
TGTTCGTAGTGACTTGGTCGATGCGCGTGAAAAACATTTGATTCCTTGTT
CGTGTGGAACCGGAGTACAGAATCACGGTTTTAGAGTCGGGCTAGTGCAC
GCCGTTAAGACAGCAGCCAGCTGTGAGAATTTAGCAGAGACATCTTTCAT
TTCGAACCTTGTCAATAACAACTCGAGTAAAACAAACCAACCTAAATTGT
CTTTCCAATTATGCCGTTTGCACCGGTTAATATCGgaattcgatgacgtc
attcgaTTGTTACAGAATTCGAATTTTGACCGTACACCCATATTGAGGAT
GTATCTGGATGCTGGTCGAAGTGATTTCGCGGACATGTTCATGGAATTGA
ATGAACGTTTGATTGATCAGAAAGGTTTGAATAATTTCAATTCTGGTTCT
AATGGTATTGAACAGATTGTTATGGACAGGAGTATCagtgtttgaaaaaa
atgttaagatttgttttgataataaaCTTTTACACGGAGAATGTAAACTT
CTTGATTAAATTGGAAGGCTACTGTCAACCTATTTCCCTGTTTTGCTTGC
TGCTTACTGGTtacagggttcagacagaccctggaaaacctggaaatatg
ataaattttcagaaaaatcagggaaactcagggaaacccagggagaaaaa
ttttttttcccagcgtctgctcagggaaactcagggaaa Run BLAST on NCBI protein sequence of TCONS_00008290-protein >TCONS_00008290-protein ID=TCONS_00008290-protein|Name=TCONS_00008290-protein|organism=Clytia hemisphaerica|type=polypeptide|length=308bp
MTSDDLQQKLLQYINEARSKPALMAAKFSLLSEIDPTLYNKLFKYASELL
DVLSEIDNPGIKFSDIYTILSSPHNDVQSTVKLSLYMYKLRTGTITDSEL
EDQLANTFNENSVKELICKGIASLYCEHYGNAFAYLSDACEQDVHTARSI
LSAFTVPFLNSVRSDLVDAREKHLIPCSCGTGVQNHGFRVGLVHAVKTAA
SCENLAETSFISNLVNNNSSKTNQPKLSFQLCRLHRLISEFDDVIRLLQN
SNFDRTPILRMYLDAGRSDFADMFMELNERLIDQKGLNNFNSGSNGIEQI
VMDRSISV Run BLAST on NCBI transcript from alignment at sc0000084:586870..594445+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00008290 ID=TCONS_00008290|Name=TCONS_00008290|organism=Clytia hemisphaerica|type=transcript|length=7576bp|location=Sequence derived from alignment at sc0000084:586870..594445+ (Clytia hemisphaerica)
TTCAGTAATAAAAGATgaataaaagtgaaaataaaaatgaaaatgaatca
aATACAATATGGAGCTTCCATCATGAAGAGCTGTGCATCGATGCAAATTT
TCCTAAGCTCGGTGGTGTTTGCTTTTAAGGAGGGTTGCTTTTCCTTTTGA
CAATTCCTCAAGAAAATGATTTATGGTAAGTAGAAAATGATTCAAAAATC
AACGATTTTGTACAGATGAGActgagtttttataagatactttaataatt
tgGTCATtttaagtaataaaaatgacgcgttcattaaaagtgacaaaatt
tgTCTTATTACTGGTAAAACGACCAACCAGATCAcaaaagagcttgtaaa
aactccatctcgtcccattTTCCAATTATAAAAAAGATCCTTGTGGTTTG
CGTCAGCAAGACCATCTTTTTCCCCCTATCCCAGATTACCCAGTGAGAAC
TTTTTAGCCTGTGGTGCAGTGTGGTTATAAAACGAAGCAGATATTTGGAA
ATTTGAatgcaaatatttttttgctaacAAAATTCGgtcattttattaaa
agttattAACTACACGAGGTAACGTGGTgacataaaaaaagaataaattg
atttttatgaTACACGTTTTGAAGTATAtgtaaaaaacaaagatttcgag
GCTGGCCAAAGTTAATAATGACATTGTGAATACACACACGGTGAGCTGCT
GTGAGCATGTTGtgatttttagtgaaaatactctcaaaatatgcttaaaa
tattttatgcTCTTAGCCCAAAAAATCTTAAGAATGTTTATTCAATAATA
GGTATATGATGTACAGGTTTACACTTTATCTTATGCAAGGTTGAATATTG
TATCATTTTATCTTTTAGATGGAAAAAAGTGGCTGGATATTTCTTATCTT
TGAAAACTGCTGATGTATAAGGTAGTTATTGGTGTCATTATACCCCCATT
TATATTCATTATGCAAAATTCACTCTTTTCAAATTCACTCTTTTCAAATT
CGATCATCACTTTGCACAGGATATACATTAGCTGTAGTTTAGACGGgcca
ctttttgccctgcctattaTAATTGTGAACTAAAgagggcataaagtggg
ctgtctccACTTGCGTGCAGTGCGATCGCACCTtctggcttcaatccttt
ttgcttggaaaaaagattacatcataaaaatgtagcgcgcgctcgaaaaa
aaagttaaacacaTTTCATCCTTTTTTCATTAcatcagatcgcgccaatg
gaattgctttatttttcttttgaccaatagcgtggaagctttgctcgaga
AATTgtgatcgaagcgcgcgcaagtggagaccagtcttaaagtcaatgca
ttgccatCTTTTGACGTccatgcaatgacttctttcaatcttttccaagc
gAAGATTTTAGCTGCCAACTTTGCctattagaataggcagggcagaaagt
cggccgtctaaactagagcatACAAAAGGTTCGACCCAATTAAAATTAGc
taaacaatttttgtttttgacgtTGCAAAATGTATTTTTGAGTAATATGA
AAGCAGTACTTTCAAAAGTCACTAATAAATATTCCCATCGGGACATGTTT
AATTTCAAATGATATTAGGTCTCCTTAGAAACAGTATTAATGAAATTGCC
AACTTTTAATTATGGTAATAACGCATCAAACGACCTTATAGTCATTATGA
AAATCAATTTACTACCGACTTTAATTGACTTTCTTAATCAATATTGTATG
TGTTtctcttgttttcattttagttgtGAAAGCAGTTGGAAAACGTGGTG
ACCACATTTCCATTTGTTGTTGATACGATATAACGTTGTGAAGATTTCAT
TTGGTTGGTTTTCTTGACTTCAACGATAGTAATAAGTAAGTAAATAGCAC
TTTTTTGAggaataccttattacacaaatattactaggtAAGTATTTAAT
GGCCTTAAATTTACAGGATCTGAAATTAAGacgaatttttctgctttttc
aaggaaacagcgGCTGATTTTAATTAAGGGgctttttattaacacgaaat
ttttcaattcgtgttagtaaaatgactagtaatattcgtgtaataaggta
tttagAACACATTTCATTTTCAGATCATTTGGAATATTGGAAATTTATCT
TgagttttcatttatctttaCAAAACGCCAACCGAAGAACCAAAGATTCG
TTTGATTAGAAATAAAGGCTAAAGCTTAGTTAAAAAAATCGAACCGTccg
ttaaagaaaaatttaaattttcaacaaagaaaacagttacagttgacgct
ctctaatttgatcttcGAGGGGAATCGGATtatcatcgaataagggagct
catcaaataagggagcgtcgtttatgagggttttcttgttgacggggact
ttaaatttcatcgaataagtgAGCCTATAgcagaacgtcgaattagacaG
CGTCAACTGTGTATACAATTTCAAGTTGAAAAAAGACAGAACCACGTTTA
AAAAACTTTATACAATAATTGTAGTATTACCATGCATGACTATTTTAATT
CGTCTGGAATTCTTTTGAACATAACTTCAGCTCATGCTAAGCTTCCCAGG
ATATTAATCAAAAGATTTAAACGATTAATCCGGATAGATTTGTCTAATAC
TGACTGACTTAAATGCACTCTCTCTTTATTTCTTATAGAGCAATtctcta
ttgtttaatttatatcGAAATTtgacaaatcaaatcaaatcatgaaacac
ttttctttttacatGGTTGATTATATTATTCTGAGTTGTGCTTGAGACCA
ATATTACTTTAATCTAAAGTCACCcgtgattttccaaagcaaaaaaaatg
ttgataaaactATTGATTGTAATTTTGAGGGTTTTTTTGACATTATAACC
GTGGTTTTTGTATTTAAAGTTCTAAGTTTGCAGTATTACTGGCTTTAACA
TTTCTTTCGCCTGGTATGATATTGTGTAACAAATGTAGATAAGAGTATAA
TTTCTCTATATTCTCTCTAGTCATCATCGCCAACCATCGTCTTTTTACTG
AAgacttactcttaggtgcccaATAAACGGGGAGGTGGGTGTTCGAATAA
ACAGGGGgttcaaataaacgggggggggaggttggaaaattttcgaaatc
ttcataaacgggggggacctaattgccggggggggttggaaaattttcga
aatcttaataaacgggggggggaggttggaaaattttcgaaatcttcata
aacgggggggacctaattgccggggcgggttggaaattgtacttatgaaa
acccaaaataaggtaaatataggctaaaataaggctatttagagcaaaat
agggggccttctctttgacagctgaaaatattcataaaaattaataaacg
ggggggggtcctaataaggtccgggggggttggaaaattttcgaaaaatt
aacaagttaGTAGTACATGGGGTTGTGAGTTTACATGAATCATTGCGAGT
TTACATGAATCGTTGCAATCAGGTTTTCTATTATTTAGACTATTTGTGAA
TGGTATGAGTGAAAAGTTAGACTCTATCATTGATTCTGGATATCAACTAA
CTGATAAATAGCCCTCAAAGTACGAAAAGTAATCAAGGACAGCTTATGCT
TATTAGTGGATGTCAACTAACTGACCAGTCACGagtgaagattttttctc
atgGTTCCTTCAAGTTTCcctcaaaattcttttttcttagatGTCAACTA
GAGCCAGTGTAGATGAATTTTTCTCATGCTCTCCTCATATCAAGATTTTG
TTTACATCTATAGCAAACCTAATTCATTAGCAACAAGTGTTTAATTAGCT
AAGGACCAGGAAATTAGATTGATGTAATCATTATAAACGACTTCTTCTCT
GTTCAGTTGAAGTTGCTGTGTATAGTTGAATTAATTTGTTGCTAGGAGTT
TCTTAAAAacttatttatttgtttttctttgataaAGAAGCATGTACAAT
GAATTGCAGAGTTTATTCtcagtttttaaaagaaagccACTTAATAAGAC
TTGTCTTGATCTGACTTATTTGATATGCGTTCTTTGGGAGAAAATTCTTA
CTTAAAATCGTCCATTTTTTTACACGTATTTGTGATAAAGATGTCACTTT
AGCAACGTATTTCTTTTTATATGTTTATTAAAAATAATGCACCAATGACG
TTACAGtgatttgaatttatttattatctcTCGTCGGTTATGTAATGAAG
TAATTTGTTGTGATTATGTCTGGGTCAGCAGTGCTGTcaacagtctttcg
attgtggCTTATTTCTGGTCTGTTGTTCTTTTTTGCTATTTGGTTTTCGG
CGTTAATTGGTTACGCGTTTTTAATAAGAACGTGAGCATTATTGTGCGAC
TTTTTAAGAAATTGGGTTTATCAGAGTCCTCGAAGTCTTAGAATCTCCTT
AAAATTTCCATATTTTGTCCAAGCCTGTTGTATGttccactcctttccct
ggatttcttcaCTTACCCTTGACCCGTCTCTTTAGGTGCTGAGTATCATA
TCAAGCAGAGGCATTAattaccattttgggaatctttggtatgacccggc
tggggatcgaacccataaccttgcgcaccgtagctagATGCTCTACCTTT
ATGCTACGGCCGTACCATATTTGAGTGAATAATTTTTCTGCAGCCAAAGT
TAGTTTGAGATTGAATACAGTGTATACTGTAAATCATTTAGATATAATAC
TACAGAATATTTGATAGGTAGAAATTTGAAAACCTCAAgcttctttctct
ttttttacagCTTTTACAACTTTAGAccttttttttctcaggaaATAGTG
CACGTTAGAAATGTCAGAGATTCTATTTGAGATAGGTTTCTCTACCGAAC
CTTTTTTAAAAGCATAATTCACCGTGGGCAGGCTACTAGACATTAATCTC
GTGGCAAacatcaaactaaaaatcacaGAAAGACGGAAGCTATTTCAACT
CATGACTTgcatgattttttataagaacatacacaatgtttgaagccttc
agatgttcttacataagttttaaacctaaattgttcttaacatgttcttt
ttttcatcgttttgtgagcatttttgtccattttcctaagaaatcgagtg
ttgTACTGTctacaaagtcttaaaatgttctgaacttgttcttaatattt
tggagATGGAAGCCTTATgcttttatatagtttgttcttataaaaatatg
tgTATTATTaatgttgcaaaaatgttgCATTATTAGAGAAAAACGTCATT
AacttattttattgtttttttcgcCAATTAAAGTAAACATTAGGATTTTT
TCTGCTGTAAAAAATGACCCATCTCTTCTCGTTTAAGTGGCTTCTCTCTG
TGTTGTTACAGTTGATATTTTGTGTGAGAAAATATTCGTTGTTTTTGATG
GTCACTTCTTTGAGGTGTGTAATGAAGTGGTCATCAAAATATTTCTGTCA
AAATTCTGTTATCACGTTAGAGAAAAGAAGTCGTATTTATTAATGGACTG
AAGTATATTTACTATAGTTTTAGAAATAatctttttggaaaatcataatt
tcaaaGTCACATAAAAGCTTACAGCTTGTGAGGGAGACGATGATCTAGGT
ACAATTTTCATACATTGTCTAAAAACCCTTGAATCATAGTCAAGACCTGT
GTTTGGCACTTTTAGGAGTTAATACCAATTTTGGATACATTGAACATAAG
CTGGATTTAGATTTTGCTGGTTTTCTAGTTTAATATAAGCTATACGAATT
TTTAAATCTGTGTAAAGGTGTGATATGGTTCTTACTGGTTACATTGTTTT
AGTAGTTTGCAGTTGTTCACATGCTTGTCACAGCTTGTGAGATAAGAAAA
CGTGTTCGTAGAGCTTATAAAATTTTGTTGAAGAGAGTTTGAAAAAGCTG
GTAGTCGCTTACTGAAAAATTGCAAGCAAAGAAATATGGGGAAAGTCAAA
GGAGCAAGTAATACCGATACATTACTTTGGTATTGCTTGTATATTAAATC
ATGAAATATGGGGCAtaacaaattttttgatgaagAATGAATTCCAAATA
AAGATTGACTTCTAAGATACGATACGAGGATTGTAACATAGTACCAAGTC
ACTGTGGTAAAAAGAGTACTGTGAGCTATTAGTTTTATGAGAATGTCAGA
CAATATCGTGACAAAGGAAGGtagagaaaattttcaacagttaTTTCCTT
CGCTTTTATCACTAGATCAGTTATCGTCTATCATTCAGATTtgaataaaa
caataaaacacgTTGCACACAGTACATAACCAAGGTCTGAAACTTTGAAA
TaactttatttcttttctatattACAGAGAACGAATAAAACACACAATTG
TCAAGATGACTTCAGACGACCTGCAACAAAAGCTTCTGCAATACATCAAC
GAGGCGCGCTCAAAACCTGCACTCATGGCCGCCAAATTCAGTTTACTCTC
AGAAATCGACCCAACTCTTTATAACAAACTATTCAAATATGCGTCCGAAT
TATTAGACGTTTTGTCCGAAATTGACAATCCTGGTATCAAATTTTCGGAC
ATTTACACTATATTGTCAAGTCCGCATAATGATGTACAATCAACCGTCAA
GTTATCGTTATACATGTATAAATTACGGACCGGAACCATAACAGATTCGG
AATTAGAGGACCAGCTTGCAAACACGTTTAACGAAAACAGTGTCAAGGAA
CTTATCTGTAAAGGAATTGCTTCTTTGTATTGTGAACATTACGGAAATGC
ATTCGCTTACCTGTCAGATGCTTGCGAACAAGATGTGCACACCGCGCGGT
CAATCTTGTCCGCTTTTACTGTACCGTTTTTGAACTCTGTTCGTAGTGAC
TTGGTCGATGCGCGTGAAAAACATTTGATTCCTTGTTCGTGTGGAACCGG
AGTACAGAATCACGGTTTTAGAGTCGGGCTAGTGCACGCCGTTAAGACAG
CAGCCAGCTGTGAGAATTTAGCAGAGACATCTTTCATTTCGAACCTTGTC
AATAACAACTCGAGTAAAACAAACCAACCTAAATTGTCTTTCCAATTATG
CCGTTTGCACCGGTTAATATCGgaattcgatgacgtcattcgaTTGTTAC
AGAATTCGAATTTTGACCGTACACCCATATTGAGGATGTATCTGGATGCT
GGTCGAAGTGATTTCGCGGACATGTTCATGGAATTGAATGAACGTTTGAT
TGATCAGAAAGGTTTGAATAATTTCAATTCTGGTTCTAATGGTATTGAAC
AGATTGTTATGGACAGGAGTATCagtgtttgaaaaaaatgttaagatttg
ttttgataataaaCTTTTACACGGAGAATGTAAACTTCTTGATTAAATTG
GAAGGCTACTGTCAACCTATTTCCCTGTTTTGCTTGCTGCTTACTGGTta
cagggttcagacagaccctggaaaacctggaaatatgataaattttcaga
aaaatcagggaaactcagggaaacccagggagaaaaattttttttcccag
cgtctgctcagggaaactcagggaaa Coding sequence (CDS) from alignment at sc0000084:586870..594445+ >TCONS_00008290 ID=TCONS_00008290|Name=TCONS_00008290|organism=Clytia hemisphaerica|type=CDS|length=927bp|location=Sequence derived from alignment at sc0000084:586870..594445+ (Clytia hemisphaerica)
ATGACTTCAGACGACCTGCAACAAAAGCTTCTGCAATACATCAACGAGGC
GCGCTCAAAACCTGCACTCATGGCCGCCAAATTCAGTTTACTCTCAGAAA
TCGACCCAACTCTTTATAACAAACTATTCAAATATGCGTCCGAATTATTA
GACGTTTTGTCCGAAATTGACAATCCTGGTATCAAATTTTCGGACATTTA
CACTATATTGTCAAGTCCGCATAATGATGTACAATCAACCGTCAAGTTAT
CGTTATACATGTATAAATTACGGACCGGAACCATAACAGATTCGGAATTA
GAGGACCAGCTTGCAAACACGTTTAACGAAAACAGTGTCAAGGAACTTAT
CTGTAAAGGAATTGCTTCTTTGTATTGTGAACATTACGGAAATGCATTCG
CTTACCTGTCAGATGCTTGCGAACAAGATGTGCACACCGCGCGGTCAATC
TTGTCCGCTTTTACTGTACCGTTTTTGAACTCTGTTCGTAGTGACTTGGT
CGATGCGCGTGAAAAACATTTGATTCCTTGTTCGTGTGGAACCGGAGTAC
AGAATCACGGTTTTAGAGTCGGGCTAGTGCACGCCGTTAAGACAGCAGCC
AGCTGTGAGAATTTAGCAGAGACATCTTTCATTTCGAACCTTGTCAATAA
CAACTCGAGTAAAACAAACCAACCTAAATTGTCTTTCCAATTATGCCGTT
TGCACCGGTTAATATCGgaattcgatgacgtcattcgaTTGTTACAGAAT
TCGAATTTTGACCGTACACCCATATTGAGGATGTATCTGGATGCTGGTCG
AAGTGATTTCGCGGACATGTTCATGGAATTGAATGAACGTTTGATTGATC
AGAAAGGTTTGAATAATTTCAATTCTGGTTCTAATGGTATTGAACAGATT
GTTATGGACAGGAGTATCagtgtttga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00008290-exon-sc0000084-1491911889:586870..587044 | TCONS_00008290-exon-sc0000084-1491911889:586870..587044 | Clytia hemisphaerica | exon |
| TCONS_00008290-exon-sc0000084-1510915933:586870..587044 | TCONS_00008290-exon-sc0000084-1510915933:586870..587044 | Clytia hemisphaerica | exon |
| TCONS_00008290-exon-sc0000084-1575043694:586870..587044 | TCONS_00008290-exon-sc0000084-1575043694:586870..587044 | Clytia hemisphaerica | exon |
| TCONS_00008290-exon-sc0000084-1491911889:587738..587790 | TCONS_00008290-exon-sc0000084-1491911889:587738..587790 | Clytia hemisphaerica | exon |
| TCONS_00008290-exon-sc0000084-1510915933:587738..587790 | TCONS_00008290-exon-sc0000084-1510915933:587738..587790 | Clytia hemisphaerica | exon |
| TCONS_00008290-exon-sc0000084-1575043694:587738..587790 | TCONS_00008290-exon-sc0000084-1575043694:587738..587790 | Clytia hemisphaerica | exon |
| TCONS_00008290-exon-sc0000084-1491911889:588643..588754 | TCONS_00008290-exon-sc0000084-1491911889:588643..588754 | Clytia hemisphaerica | exon |
| TCONS_00008290-exon-sc0000084-1510915933:588643..588754 | TCONS_00008290-exon-sc0000084-1510915933:588643..588754 | Clytia hemisphaerica | exon |
| TCONS_00008290-exon-sc0000084-1575043694:588643..588754 | TCONS_00008290-exon-sc0000084-1575043694:588643..588754 | Clytia hemisphaerica | exon |
| TCONS_00008290-exon-sc0000084-1491911889:593247..594445 | TCONS_00008290-exon-sc0000084-1491911889:593247..594445 | Clytia hemisphaerica | exon |
| TCONS_00008290-exon-sc0000084-1510915933:593247..594445 | TCONS_00008290-exon-sc0000084-1510915933:593247..594445 | Clytia hemisphaerica | exon |
| TCONS_00008290-exon-sc0000084-1575043694:593247..594445 | TCONS_00008290-exon-sc0000084-1575043694:593247..594445 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000084 | supercontig | sc0000084:586870..594445 + |
Blast
The following BLAST results are available for this feature:
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