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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008178 ID=TCONS_00008178|Name=TCONS_00008178|organism=Clytia hemisphaerica|type=transcript|length=3288bpRun BLAST on NCBI transcript from alignment at sc0000082:505864..522665- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00008178 ID=TCONS_00008178|Name=TCONS_00008178|organism=Clytia hemisphaerica|type=transcript|length=16802bp|location=Sequence derived from alignment at sc0000082:505864..522665- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00008178 vs. Swiss-Prot (Human)
Match: RTKN2 (Rhotekin-2 OS=Homo sapiens GN=RTKN2 PE=2 SV=1) HSP 1 Score: 160.229 bits (404), Expect = 9.766e-41 Identity = 134/499 (26.85%), Postives = 223/499 (44.69%), Query Frame = 1
Query: 139 SFNAPKMDLAE-------EIQLQIDDQIRMREGAMKLMSASSTLNQALETSKNLLTINARILGLMSALQKKKQERVLQEYNRQRSSSVTESPQDACTGRIAISDMRIPLMWRDNVHFTGKTGDQSYYAFALIRCGDQVRDTPLYEITSADTDMYFDLAIPFDDLPPDFKMDFEVYYTV-----LTSNEAHGMKAPRSSMNLRNQKK---QIQFKAPKFC-------------LAGHVHIGVDDIRSGIISKDLTMGGKGASGVAVLGDLHEFPVHPLELWGQICFQLAAQPVDMKSDIHKGPIS----IELNSPANKYYCILRQDMLHCWENEEHV------ITSQPLNS-IKLTANTKVSQVQSAEVNSVKLLVGETVTATLIFDSSTDCFEWKNAIRRQINNILSWKYAFEEQMYIAEMKKNR----LSIPSTASFYDQ-----IKIEEITSIHQSSHAVFNGKGIINEAFNNPPPSTQTIEQKTPSPSLTNGTNHQ 1491
S P + LA IQ +ID +IRMREG KL+S S+ +Q L KNL+ NAR++ S LQK +E++ + R + AC G+IAISD+RIPLMW+D+ HF+ K + Y F L + G V DT + + TD+ F+ F++ PDF++ EVY +T+ K ++S++ KK +Q + + C L H + ++ + +L++ G S L L+G +C +L AQP M D G ++ +E + YC+LR L+C+ + E + P+N ++ A K ++ + + + + G+ +T D+ D +W A + ++ WK+ EE M I M + L+ +T+ ++D +K+E +T I Q NG+ +I + + PP P +L +G NHQ
Sbjct: 5 SLRGPALRLAGLPTQQDCNIQEKIDLEIRMREGIWKLLSLSTQKDQVLHAVKNLMVCNARLMAYTSELQKL-EEQIANQTGRC-DVKFESKERTACKGKIAISDIRIPLMWKDSDHFSNKERSRRYAIFCLFKMGANVFDTDVVNVDKTITDICFENVTIFNEAGPDFQIKVEVYSCCTEESSITNTPKKLAKKLKTSISKATGKKISSVLQEEDDEMCLLLSSAVFGVKYNLLAHTTLTLESAEDSFKTHNLSINGNEESSFW------------LPLYGNMCCRLVAQPACMAEDAFAGFLNQQQMVEGLISWRRLYCVLRGGKLYCFYSPEEIEAKVEPALVVPINKETRIRAMDKDAKKRIHNFSVINPVPGQAITQIFAVDNREDLQKWMEAFWQHFFDLSQWKHCCEELMKIEIMSPRKPPLFLTKEATSVYHDMSIDSPMKLESLTDIIQKKIEETNGQFLIGQHEESLPP---------PWATLFDG-NHQ 479 The following BLAST results are available for this feature:
BLAST of TCONS_00008178 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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