|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008172 ID=TCONS_00008172|Name=TCONS_00008172|organism=Clytia hemisphaerica|type=transcript|length=4651bpRun BLAST on NCBI transcript from alignment at sc0000082:368467..421012- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00008172 ID=TCONS_00008172|Name=TCONS_00008172|organism=Clytia hemisphaerica|type=transcript|length=52546bp|location=Sequence derived from alignment at sc0000082:368467..421012- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00008172 vs. Swiss-Prot (Human)
Match: TRPA1 (Transient receptor potential cation channel subfamily A member 1 OS=Homo sapiens GN=TRPA1 PE=1 SV=3) HSP 1 Score: 148.673 bits (374), Expect = 2.204e-56 Identity = 100/344 (29.07%), Postives = 173/344 (50.29%), Query Frame = 3
Query: 1470 LEQKANVNAKDYYGSTPLHFASMRGNVTAARHLLNVKTIDIEAKDRTQMTALHSAASNGSYEVCDLLLQHGADIRCRDEEDMTPLHFASMEGHVDIVELLFDVGEKQGGYTMLAKMIMDQDRDDQTALHLAVENGHCDIVKLCISKGANVNFVKTNMNTPLHIACTSGEEGIVQTLVESEAD----IEAKNVLQETPLHRAALFNRINIVRYLLDRDAEIDCRDKDKKTPLMNAVRKDNVETVKLLLQRGADIKVKDAADKTSLYVAAEEDCWDVINI---IRKIPQSSSLLEEFDKNENTPLHIASTKGHIKAVEVLLSMGSLIDAKNDQNLTPLHLASKYGR 2480
L + AN N +++ PLH A N + LL +TID+ + TA+ A + + E +LL+ GA ++ P+H A+ G + +E++ GE+ G L M+ + T LHLAV+NG +++K+C+ GA ++ V+ T +H A T G IV+ ++ S + + + ET LHRA+LF+ + YL+ A+I+ D + ++PL+ A + V LLL +GA + +KD + L++ ++ + + N+ ++ Q L+ + D + TPLH A +G +V LL I +K+ +PLH A+ YGR
Sbjct: 118 LSRGANPNLRNFNMMAPLHIAVQGMNNEVMKVLLEHRTIDVNLEGENGNTAVIIACTTNNSEALQILLKKGAKPCKSNKWGCFPIHQAAFSGSKECMEIILRFGEEHGYSRQLHINFMNNGK--ATPLHLAVQNGDLEMIKMCLDNGAQIDPVEKGRCTAIHFAATQGATEIVKLMISSYSGSVDIVNTTDGCHETMLHRASLFDHHELADYLISVGADINKIDSEGRSPLILATASASWNIVNLLLSKGAQVDIKDNFGRNFLHLTVQQP-YGLKNLRPEFMQMQQIKELVMDEDNDGCTPLHYACRQGGPGSVNNLLGFNVSIHSKSKDKKSPLHFAASYGR 458 HSP 2 Score: 91.6633 bits (226), Expect = 2.204e-56 Identity = 80/300 (26.67%), Postives = 131/300 (43.67%), Query Frame = 1
Query: 2494 LLEESGTHNIVNDEDDASNTPLHLAALEGHENVLSILLEKGAA-VDARNAMLWTPLDCAASRGWTWCAENLLDAD-SLIDPTDKAKTTPLHLASKEGHVDMIKLLISRKAVITRKDHLGRNCLDWAIENNQRDAALAILDCEQWKNALR--NCTAEGNKVTTPMRKLIKKLPDVAEKVFDKCIKGNGLPVEHPQYEISCSYEFLEDSFTEWGPSVFDFKALEIKKQHVVHNANSNVTMDTQKKSYCHMIGRKLHLPGYVKKQTERKRNHPLKFMVQNERTKLLCHPLVTYLLRHKWRSLG 3381
LL++ ++N+ D TPLHLAA GH+ V+ +LL+KGA + N WT L A+ G+T + +LD + D D+ T LH A++EGH + LL+S A I + L A+ N +++ L I+ ++W L+ + + GNK P+ ++I+ LP+ + + D C+ H + SC ++E ++FK L+ + +V + L MVQN R +LL HP+ L KW + G
Sbjct: 465 LLQDISDTRLLNEGDLHGMTPLHLAAKNGHDKVVQLLLKKGALFLSDHNG--WTALHHASMGGYTQTMKVILDTNLKCTDRLDEDGNTALHFAAREGHAKAVALLLSHNADIVLNKQQA-SFLHLALHNKRKEVVLTIIRSKRWDECLKIFSHNSPGNKC--PITEMIEYLPECMKVLLDFCML-------HSTEDKSCRDYYIE----------YNFKYLQCPLEFTKKTPTQDVIYEPLT---------------------------ALNAMVQNNRIELLNHPVCKEYLLMKWLAYG 715 HSP 3 Score: 140.969 bits (354), Expect = 1.840e-33 Identity = 89/245 (36.33%), Postives = 141/245 (57.55%), Query Frame = 1
Query: 3676 IVLFLA-VFSLIIEFAKLISQLHQYFLP-HCVVEFTSYILSILYVIESFAYNGAPIEIMSRCTDWQRSLGAITVWLSWINLVLFMRKFPKLGIYVVMFTDILKTFAQFFTVFALFVISFGLGFHMMLYEQRPRAFSTPLRAILKTTMGMLGEFEYDTVFNDDY--NPLP---TAWVIYVAYLIVCCIIVMNLLVGLAVDDIKGVQEQAALKRLAMQVDLTLDVEKALPLSIQNKLIKTEELIYPN 4389
I++FL+ +F E ++ Q YF+ V+E+ Y I++V+ F A ++ WQ GAI V+ W+N +L++++F GI++VM ILKT + VF +++FGL F+++L Q P FS+PL +I++T MLG+ Y F + Y N L ++ V++ I I++MNLL+GLAV DI VQ+ A+LKR+AMQV+L +EK LPL K+ + ++YPN
Sbjct: 775 ILVFLSSIFGYCKEAGQIFQQKRNYFMDISNVLEWIIYTTGIIFVLPLFVEIPAHLQ-------WQ--CGAIAVYFYWMNFLLYLQRFENCGIFIVMLEVILKTLLRSTVVFIFLLLAFGLSFYILLNLQDP--FSSPLLSIIQTFSMMLGDINYRESFLEPYLRNELAHPVLSFAQLVSFTIFVPIVLMNLLIGLAVGDIAEVQKHASLKRIAMQVELHTSLEKKLPLWFLRKVDQKSTIVYPN 1008 HSP 4 Score: 100.908 bits (250), Expect = 3.724e-21 Identity = 107/387 (27.65%), Postives = 172/387 (44.44%), Query Frame = 3
Query: 1443 LLRIHSASXLEQKANVNAKDYYGSTPLHFASMRGNVTAARHLL-NVKTIDIEAKDRTQMTALHSAASNGSYEVCDLLLQHGAD----IRCRDEEDMTPLHFASMEGHVDIVELLFDVGEKQGGYTMLAKMIMDQDRDDQTALHLAVENGHCDIVKLCISKGANV--------NFVKTNMN------------------------------TPLHIACTSGEEGIVQTLVESEADIEAKNVLQETPLHRAALFNRINIVRYLLDRDAE---IDCRDKDKKTPLMNAVRKDNVETVKLLLQRGADIKVKDAADKTSLYVAAEEDCWDVINIIRKIPQSSSLLEEFDKNENTPLHIASTKGHIKAVEVLLSMGSLIDAKNDQNLTPLHLA 2465
+LR ++ ++N + +TPLH A G++ + L N ID K R TA+H AA+ G+ E+ L++ + + D T LH AS+ H ++ + L VG I D + ++ L LA + +IV L +SKGA V NF+ + TPLH AC G G V L+ I +K+ +++PLH AA + RIN + LL ++ ++ D TPL A + + + V+LLL++GA + + D T+L+ A+ + +I + + + D++ NT LH A+ +GH KAV +LLS + I N Q + LHLA
Sbjct: 217 ILRFGEEHGYSRQLHINFMNNGKATPLHLAVQNGDLEMIKMCLDNGAQIDPVEKGRC--TAIHFAATQGATEIVKLMISSYSGSVDIVNTTDGCHETMLHRASLFDHHELADYLISVGAD----------INKIDSEGRSPLILATASASWNIVNLLLSKGAQVDIKDNFGRNFLHLTVQQPYGLKNLRPEFMQMQQIKELVMDEDNDGCTPLHYACRQGGPGSVNNLLGFNVSIHSKSKDKKSPLHFAASYGRINTCQRLLQDISDTRLLNEGDLHGMTPLHLAAKNGHDKVVQLLLKKGA-LFLSDHNGWTALHHASMGGYTQTMKVI--LDTNLKCTDRLDEDGNTALHFAAREGHAKAVALLLSHNADI-VLNKQQASFLHLA 587 The following BLAST results are available for this feature:
BLAST of TCONS_00008172 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2026, MARIMBA.