TCONS_00008123 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008123
Unique NameTCONS_00008123
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length909

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008123 ID=TCONS_00008123|Name=TCONS_00008123|organism=Clytia hemisphaerica|type=transcript|length=909bp
TAGTGGCGGTATTTCGATCAAACCTAGTAGTGGGATGGGTTTGATGCGGG
GAGACATGGGTGGAGCCGCTTGCGTTTTGGCTACGCTGCACATCATTGCA
AAATTGAAGCTACCTGTCAATTTATCAGTGCTGGTTCCCATGGCAGAAAA
TATGCCGTCTGATCGAGCAGCCAAACCAGGAGATGTTTTTACTGCACTCA
ATGGAAAGACCGTCGAGGTCGATAACACAGATGCTGAAGGACGAATGATC
CTGGCGGACGCTTTATGCTACGCGGACGAATTTCAACCGTCTACAATAAT
CGATGTCGCTACACTTACAGGTGCAATCGACGTGGCGTTAGGTGGGGCAG
CCGCTGGAGCTTACACAACGTGTAACAACTTATGGCAGAACATGGAACAG
GCCAGTTACACGACAGGCGATCGTTTTTGGAGAATGCCTTTGTACAAACA
TTACACCAAACAAATGAAATGTAGCTTGACTGCTGATCTACGAAACACGC
AGAAAAAAGCACGTTCCGCTGGGTCCGCAACTGCTGCCGCTTTTTTAAAG
GAATTTGTAACGATTAAGAGCTGGGCTCATCTAGATATTGCTGGCGTGAT
GGATAATTCCGGAGGGGAATTACCGTATCTCAACTCCGGAATGTCAGgTC
GTCCGACAAGAACTTTGGTTGAAACCGTCCGAAATATTTTTACGtagaaa
aaagaaacattatttttatttgacaaGTTTTTATAGTTTAGATCACACAT
AactttagaatttatttttgtatttttgatggAAACATTTACCAATtaca
aaaaactcattttttcaatgcaacGATTTCATCCAAGCCATACGCCCCTC
TTTTATAATTGAGATAATTCTCAAGCtgcttcaaatttttttgtaaaacc
cATACTTAA
Run BLAST on NCBI

protein sequence of TCONS_00008123-protein

>TCONS_00008123-protein ID=TCONS_00008123-protein|Name=TCONS_00008123-protein|organism=Clytia hemisphaerica|type=polypeptide|length=231bp
SGGISIKPSSGMGLMRGDMGGAACVLATLHIIAKLKLPVNLSVLVPMAEN
MPSDRAAKPGDVFTALNGKTVEVDNTDAEGRMILADALCYADEFQPSTII
DVATLTGAIDVALGGAAAGAYTTCNNLWQNMEQASYTTGDRFWRMPLYKH
YTKQMKCSLTADLRNTQKKARSAGSATAAAFLKEFVTIKSWAHLDIAGVM
DNSGGELPYLNSGMSGRPTRTLVETVRNIFT
Run BLAST on NCBI

transcript from alignment at sc0000082:456979..467986+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008123 ID=TCONS_00008123|Name=TCONS_00008123|organism=Clytia hemisphaerica|type=transcript|length=11008bp|location=Sequence derived from alignment at sc0000082:456979..467986+ (Clytia hemisphaerica)
TAGTGGCGGTATTTCGATCAAACCTAGTAGTGGGATGGGTTTGATGCGGG
GAGACATGGGTGGAGCCGCTTGCGTTTTGGCTACGCTGCACATCATTGCA
AAATTGAAGCTACCTGTCAATTTATCAGTGCTGGTTCCCATGGCAGAAAA
TATGCCGTCTGATCGAGCAGCCAAACCAGGAGATGTTTTTACTGCACTCA
ATGGAAAGACCGTCGAGGTTGGTTCTATTTTACTATCCGAGGACGCTGGT
TAGAAAGATATTCGTGTTATGAGCTTTTGTACCATATCTTGTACATATCC
ATTCTTTCAAAGATGTCAAATAAATGGGCCccttgtgttttttgtttgct
gtttttttttactctcGCAGCAGAACCCCTTATAACATTGATAAATTTCT
GAAAACACTTTTATCTGTCAAAAAAATCcattattttgctccaaaatcTG
ATAATGACTGTTCGGATAATAATCCCCCTCGCCTTGTAATCAGCATCTCC
CCATTCAGCAAATTTCAAACTCCCTTTNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNGGTTTGGCGATGGCAGAGGGTCAGAAT
TGGGCTCGTGATTTGATGGAAACGCCTTCTAATTTCAAATATCCTGAACT
GTTTGCTGACAAAGTTGTTCAACGATTCTCGGCGTTCAAGAATGTTGATG
TCATCGTCAGGTGAATAAATTATTGTGAATGATTTTGATCTTTGAAAATG
AACGCATTTTTCCGACTCCAGGTAGGTTTGTCGTAACAAGAACTTTtaca
tataaaatacaaaaacctAATGAAACAAatagaagaagaaacaaaatcat
taattttGAGTTGACCAATAATAGTAcatgttttataagaatatgctaag
aactGTCACCATcgtatatttttacaaccgaACCGTTAATAAGAATCTCG
AGACTTCACAAAATtgtcatacttttttttttgggtgGGGGGTATGTATA
TAGATATAGGCAGGGTTTAGATTCTAAACTTAGAATGTCGTTAAGAATAT
TATGGGTTGATTTTTATCCTAAAGttgagaatatccatgatgaaatggaa
aaaaataccATTCTTATAACAAAAGCGTTTAGGGTTTAAGAATGTCCCTG
AGCCATTGGCTCCTTGCAAAGTATCACCCTGTATTAGCTGTTTGGACCAT
CTTGCAAGCAGCgggctttcattttctttcattattttcCAGAGATGATG
TCTGGGCGCGAGAGAAAGGAATGGATTGTTTCCTGTCAGTTGGTAAAGGT
TCCGATAAGAAACCCATGTTTGTGGAACTTCATTACAACCAAAATGCAGA
TGAACAAAAGAAAGTGGTTCTTGTTGGAAAAGGTAATTCATTTATCTACA
TCAACAAACATCCGGTTGTATGAAGTAGTTAGACCCCGCTGGCTTGAATG
ATTGATGCACGCGAAGACGTTGAATTGCAAGAGTTTGATTTGTGACGAat
caaatagcttaaaacggATCACGTGTCTTAAATTTCATTCATCTCTCCAG
TTGGCCGGGAAAAACAAAGATAAAGCTTTGAGGCaactttttgaacaatt
ttttatttttattttaggaaTCACATTCGATACgtaagtgacgtcatttt
ttcgtTTTGTGTGATTGTTGAGTGTTAAAAGACGAAGCAGAGAAGATATT
CATCTACATATTCATCGACAACTCAGGAAACTTTCCGTACTACTCATCAT
GTTAATAAGAAGATGTgcactgaaaataattttcaaaatcagcTGGCTAT
CGGATTAAAAGTGTATCTTGATCGGTTTACGGGTGACGTAATAAAATCCA
GGGGGTCTCGAGTCAAAAAGGAGATTTTGCTGATCGAGTTggtaagattt
tatttattataattttgaCTTCTTCATTTCATCTCTCTAGTGGCGGTATT
TCGATCAAACCTAGTAGTGGGATGGGTTTGATGCGGGGAGACATGGGTGG
AGCCGCTTGCGTTTTGGCTACGCTGCACATCATTGCAAAATTGAAGCTAC
CTGTCAATTTATCAGTGCTGGTTCCCATGGCAGAAAATATGCCGTCTGAT
CGAGCAGCCAAACCAGGAGATGTTTTTACTGCACTCAATGGAAAGACCGT
CGAGGTTGGTTCTATTTTACTATCCGAGGACGCTGGTTAGAAAGATATTC
GTGTTATGAGCTTTTGTACCATATCTTGTACATATCCATTCTTTCAAAGA
TGTCAAATAAATGGGCCccttgtgttttttgtttgctgtttttttttact
ctcGCAGCAGAACCCCTTATAACATTGATAAATTTCTGAAAACATTTTTA
TCTGTCAAAAAAATCcattattttgctccaaaatcTGATAATGACTGTTC
GGATAATAATCCCCCTCGCCTTGTAATCAGCATCTCCCCATTCAGCAAAT
TTCAAACTCCCTTTGAACATTAATCGATCTCGCCCTGACAAACGACAAGT
CGAAAATCTCCCACGAAACCGTAATTTTCCCTTATCACTAAGTGATCATG
ATATGATTGGAGTTGTTCGGAAACGTAACCATCAAAGATATGAACCCAAA
ACCATCAAATGCCGAAACTTTTCGCGGTACAATCCTGATGCTATGAACAA
CGAACTTCGCCAAGTCGATTGGAATCTTGTATATCAACAGTCCGAACCAA
ATGCTGCTTGGAAATACTTCAAACAAATCGTGACTAACTCCTTCAATCGC
CATGCCCCTGAAATAACAAAACGCATCAAAGGTCGCCCATGTCCATGGCT
CACCCAAGAAATCCGAGCACACCTGAACGATCGTGACAAAGCTGATCGAA
AAGCAAGGCGAACGAAAGACGAAGGTGATCGAAATATCTATCGTCGTAAA
AAGAACCGATGCACCAATCTCATCAAACAGGCGAAAAACAATTACCATAA
AGAAATCCTCACCGAAAACCtcaaaaatagtaaaaagtTCTGGGGTcaca
tcaaaaaacttttaccaTCTTCAAACGTAAAATCAAAACCAACTGACGTT
CTCAAAGACGGTGACGCAACCGCTACTAGCCCAAAAGACAAAGCCGATAT
GTTTTGTAATTATTACGCCAAAGTGGCACagaatctaaagaaaaaagcaA
TGCCACTAATAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATTTTTGGATCTA
GTGAGGCTTTGGTTTTCACTCTCGTTGCTACATTTAACTATATCCCTAAT
ATTCTGTATCAATTTGTTTACAACACCACAACACTACGCAATGATCTTTT
ACCAGAGATAGTAAAGATAGGCGTTTAGGATATTTTATCTAATATTTATT
TccgtcttattttttttttttttttaaacattttgaatatGATAATTTCA
CTGTTTTTGGGTACTTTCTCCTTTTCAGAGTTTACACATTGCGTCACACT
TTTCAGTATTAATATTCTCAGTATTACTGTATTAATAGACTTCACATGTA
TACTCTTAGTCTTGTTTACATTAATTTTAAGATAACCTTTTGAAGTATCT
ATCGATCACAGCGTGGTTTTTCTGCGGGTATAACCTTTCATATTTAGTTN
GATGTCAAATAAATGGGCCccttgtgttttttgtttgctgttttttttta
ctctcGCAGCAGAACCCCTTATAACATTGATAAATTTCTGAAAACACTTT
TATCTGTCAAAAAAATCcattattttgctccaaaatcTGATAATGACTGT
TCCGATAATAATCCCCCTCGCCTTGTAATCAGCATCTCCCCATTCAGCAA
ATTTCAAACTCCCTTTCCGCTGTTTCTCAGGAACTTTGGagtaataatca
aataaaaaatggcaaaaaaagagTCCATAAAAATTGTGTCATTGTGTTTA
GGTCGATAACACAGATGCTGAAGGACGAATGATCCTGGCGGACGCTTTAT
GCTACGCGGACGAATTTCAACCGTCTACAATAATCGATGTCGCTACACTT
ACAGGTAAGGGGAGGTAAAATTATTTGACCCTTGGGATCTTCGCAACCAT
CACTTAACCCAACTTAGATATTCTTGATAAGATTGGTCTCTAAAGCGTTT
TCATTTTTGCTGTCCTTTTTGCTGTCCTTTTTTGCTTCATTTACAGTTTG
TACAACTGAAAAACTTGATATTACTGCGTTGGATAAAACTGCCACCTTTC
ATCTTCAGGTGCAATCGACGTGGCGTTAGGTGGGGCAGCCGCTGGAGCTT
ACACAACGTGTAACAACTTATGGCAGAACATGGAACAGGTAACATCCGAT
TCCTGAAATTGATTTATATAAAAActtcctttttttgtttttcgaagCTT
TTCTTCGAAACAGGTTTGAGTAGGTTTTCATCAAAATACTTGGCTTTCTT
TCCAGGCCAGTTACACGACAGGCGATCGTTTTTGGAGAATGCCTTTGTAC
AAACATTACACCAAACAAATGAAATGTAGCTTGACTGCTGATCTACGAAA
CACGCAGAAAAAAGCACGGTACGATACCTGAGGGATTTTTTTCTCAGACT
TCTTCTTTGGGAAGCTGTTTTTTACTTAACCAAAAGTCAATAATTAAGAA
GCTTCGTGAATGAGATTTGTTCAAGTATTGATTGCTTAACAGTTCTTTAA
GACATAGCTTTCTTTATTTATACCACTCAATTtaattggacctaccccgg
tggggtggaggtcctataaattcacctctgtccgttcgtccgtccgtctg
ttcgttaccaacttttctcgagattggctcattagttttttctgattttt
tgcacaaagatgcataactataaaccctcgaatgtgacggagcccgattt
tcggggaaaaaattttttgggcaaatttgggccaaaaaacagctaaaaaa
cgggttttttgaactttgtaaaaaattggatcattaattttttctgattt
tttgcatgaaagtaccatcataggtaaaagatggcttaagcagatttttg
ccaaaaaattttgttggctcaaaaaacgcatgtttatctataagaatcac
tattactaagcatacatcaatgttcttagtcaaattactcaattttttta
tgacatagatgttttttttgctcgcgagggcttacttttaaagaatatgt
gtgtttagacatgaaattttggttgcttggcgtgtttttatagaaaaact
ggccaaattcgatatttttttataagcacNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNccttatcaattacttaggtattagcttttctcgagattggc
tctttcattctttatgattttttgcacaaagatgcataactacaaaccct
caaatgtgacagagctcgatttacgaaaaaaaacatttttgggcaaattt
gggccaaaaaacggccaaaaaacgggttttttggactttgtgaaaaattg
gatcattaattttttctgattttttacatgaaagtagggtaccatcatag
gtaaaagATGGCTCAAGCAGATTTTTGCAAAAAAAATTAGTTGGCTCAAT
aaacgcatatttatctataaaaatcactattaataagcatacatcaatgt
tcttagtcaaattactgaattttttttgtgagatagatattttttttact
cgtgagggcttacttttaaagaatatgtgtgtttggacataaaattttgg
ttgcttggcgtttttttatagaaaaactggccaaattcgatattttttta
taagcacattatcaattacttaggtattagctcttttcgagattggctct
ttcNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTcgttcttta
tgattttttgcacaaagatgcataactataaaccctcaaatgtgacggag
ctcgatttttggaagaaaaaaaaattgggtaagtttcagctaaaaaacgg
ctaaaaaaaggttttttggatttgtgaaatattgaatcattgtttttttc
tgattttttgcatgaaagtaggtaaaagatggctcaagcagatttttgta
aaaaaataatttttcagctcaaaaaacgcatctttatctataagaatcag
tattaataagcatacatcaatgttcttagccaaattactgaattttttga
tgagatatgttttttttgctcacgaagtcttgaatataaaagaatatttt
aagagcatgaaattttggtttctaaatgttttttttataagaaataaacg
actaattttaatatatcgtgactatttgtgttctgaatgattgtttaatg
gtcacgctcacgtagttTTCagttatatatgtgttaaatgcataaccagg
taggtccataaaagtatcacttgttattttattttttccataGTTCCGCT
GGGTCCGCAACTGCTGCCGCTTTTTTAAAGGTAAGAGTAGTAATTCGAAT
CAAAAACTTCCATAAAATGGAAAGTTTATATTTACACTGTTAAAGACTTC
Tttaagcgtacaaactttcgcgggcagattcttttgtgattttcgcgaat
tttagcccttttcgcgaaagtaaatgtctttgaaaattcttgaaagaGCC
ATTCGCATCCATtcagtttatgctcgcgaaaaaaatTCCTGAcaagataa
gaaaaaaatcagtaatGCTTCTaaattaaagtaaaattaagaataattct
atttatactgagacgattaattagtctgagacgagcaatttagaaaTTGA
GAattatggaggagtgtactttcGATTCATatttcaataaataggatctc
ctccacagatcacattttacaaactattcgtctcagacgatttttccgtc
tcGGTATAAATAGAACTATTTATGGCACCTTTCTGCCCGTTAAAGCCTCA
CGAGTCAAAAAACAAAAGCTTCAATCCgattcaagaagtatttgtccttC
TAAGCCATTTCTTCGTGTGAAAATTGTTTGCGATTTGTTTATGTTGTTCG
TGAAAGTTTTTTagggaaaaaatgtttttcgataCTCCCCTGTAGATTCA
AAGCTTCCTAATCATATTTGATCCATATTTATTTGGATTGATAAcgtgtc
taattttccgtcccTCAGGAATTTGTGACGATAAAAAGTTGGGCCCACCT
CGACATGTCGAACGTCAAAGCGAACTCGAGTGGCGAATTATCTTATCTCG
GTCCAGGCTTTTCAGGTCAGTCTAACCTCATGTTTTTCTCTCATATTTTT
GTAGGAATTTGTAACGATTAAGAGCTGGGCTCATCTAGATATTGCTGGCG
TGATGGATAATTCCGGAGGGGAATTACCGTATCTCAACTCCGGAATGTCA
GGTTTGTCTGCTTTCTTTTCCTGTTTTTCAAAATGCATGGACACGTAAAT
TCTCTTTCCGCCTTCGTCAGCTCtgaaaagctcaatttttggacctacct
ccgggtaccccggtggaggtcctttaaattaacccatgttcgtccgtccg
tccgtccgttcgtctgttaccagcttttctcgggattggcttattacttt
tttctgtttttttggcacaatgatgcaaaatgatgattcctaaaaagtga
cgggcaaatttgggctacaaactgcctaaaaatagggttttttggacttt
gtgcaaaatcctgtcattacttttttcttattttttgtacaaagatggag
ggcaaaattctctaaagaatgactgaagtggtttttcccggaaaattctt
attcgccttaaaagacggattttcgtattttggggaaattccctttaacc
aaataaggaaatatagcttttctcaatgttgactcataatgtttttctga
ttttttgcacaatgatgcaaaatggcaatgcccaaaatgtgacggagcca
gatttttaaggaaaatttttttgggcaaatttggggaaaaaactgcttaa
aaatagggttttttgggcctgaatggtttaagtgattttcgtatttgggg
aaattcctttttaccattttacattattcaacacacNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaggtagg
tccattcagcatgttgcttgtttggtttgattttttggaaCTCTTTTGTT
AGGGGGAGGCATTTGAGATCTGatattgattttcttattttcttaggTCG
TCCGACAAGAACTTTGGTTGAAACCGTCCGAAATATTTTTACGtagaaaa
aagaaacattatttttatttgacaaGTTTTTATAGTTTAGATCACACATA
actttagaatttatttttgtatttttgatggAAACATTTACCAATtacaa
aaaactcattttttcaatgcaacGATTTCATCCAAGCCATACGCCCCTCT
TTTATAATTGAGATAATTCTCAAGCtgcttcaaatttttttgtaaaaccc
ATACTTAA

Coding sequence (CDS) from alignment at sc0000082:456979..467986+

>TCONS_00008123 ID=TCONS_00008123|Name=TCONS_00008123|organism=Clytia hemisphaerica|type=CDS|length=4872bp|location=Sequence derived from alignment at sc0000082:456979..467986+ (Clytia hemisphaerica)
AGTGGCGGTATTTCGATCAAACCTAGTAGTGGGATGGGTTTGATGCGGGG
AGACATGGGTGGAGCCGCTTGCGTTTTGGCTACGCTGCACATCATTGCAA
AATTGAAGCTACCTGTCAATTTATCAGTGCTGGTTCCCATGGCAGAAAAT
ATGCCGTCTGATCGAGCAGCCAAACCAGGAGATGTTTTTACTGCACTCAA
TGGAAAGACCGTCGAGGTCGATAACACAGATGCTGAAGGACGAATGATCC
TGGCGGACGCTTTATGCTACGCGGACGAATTTCAACCGTCTACAATAATC
GATGTCGCTACACTTACAGGTGCAATCGACGTGGCGTTAGGTGGGGCAGC
CGCTGGAGCTTACACAACGTGTAACAACTTATGGCAGAACATGGAACAGG
CCAGTTACACGACAGGCGATCGTTTTTGGAGAATGCCTTTGTACAAACAT
TACACCAAACAAATGAAATGTAGCTTGACTGCTGATCTACGAAACACGCA
GAAAAAAGCACGTTCCGCTGGGTCCGCAACTGCTGCCGCTTTTTTAAAGG
AATTTGTAACGATTAAGAGCTGGGCTCATCTAGATATTGCTGGCGTGATG
GATAATTCCGGAGGGGAATTACCGTATCTCAACTCCGGAATGTCAGgTCG
TCCGACAAGAACTTTGGTTGAAACCGTCCGAAATATTTTTACGtagAGTG
GCGGTATTTCGATCAAACCTAGTAGTGGGATGGGTTTGATGCGGGGAGAC
ATGGGTGGAGCCGCTTGCGTTTTGGCTACGCTGCACATCATTGCAAAATT
GAAGCTACCTGTCAATTTATCAGTGCTGGTTCCCATGGCAGAAAATATGC
CGTCTGATCGAGCAGCCAAACCAGGAGATGTTTTTACTGCACTCAATGGA
AAGACCGTCGAGGTCGATAACACAGATGCTGAAGGACGAATGATCCTGGC
GGACGCTTTATGCTACGCGGACGAATTTCAACCGTCTACAATAATCGATG
TCGCTACACTTACAGGTGCAATCGACGTGGCGTTAGGTGGGGCAGCCGCT
GGAGCTTACACAACGTGTAACAACTTATGGCAGAACATGGAACAGGCCAG
TTACACGACAGGCGATCGTTTTTGGAGAATGCCTTTGTACAAACATTACA
CCAAACAAATGAAATGTAGCTTGACTGCTGATCTACGAAACACGCAGAAA
AAAGCACGTTCCGCTGGGTCCGCAACTGCTGCCGCTTTTTTAAAGGAATT
TGTAACGATTAAGAGCTGGGCTCATCTAGATATTGCTGGCGTGATGGATA
ATTCCGGAGGGGAATTACCGTATCTCAACTCCGGAATGTCAGgTCGTCCG
ACAAGAACTTTGGTTGAAACCGTCCGAAATATTTTTACGtagAGTGGCGG
TATTTCGATCAAACCTAGTAGTGGGATGGGTTTGATGCGGGGAGACATGG
GTGGAGCCGCTTGCGTTTTGGCTACGCTGCACATCATTGCAAAATTGAAG
CTACCTGTCAATTTATCAGTGCTGGTTCCCATGGCAGAAAATATGCCGTC
TGATCGAGCAGCCAAACCAGGAGATGTTTTTACTGCACTCAATGGAAAGA
CCGTCGAGGTCGATAACACAGATGCTGAAGGACGAATGATCCTGGCGGAC
GCTTTATGCTACGCGGACGAATTTCAACCGTCTACAATAATCGATGTCGC
TACACTTACAGGTGCAATCGACGTGGCGTTAGGTGGGGCAGCCGCTGGAG
CTTACACAACGTGTAACAACTTATGGCAGAACATGGAACAGGCCAGTTAC
ACGACAGGCGATCGTTTTTGGAGAATGCCTTTGTACAAACATTACACCAA
ACAAATGAAATGTAGCTTGACTGCTGATCTACGAAACACGCAGAAAAAAG
CACGTTCCGCTGGGTCCGCAACTGCTGCCGCTTTTTTAAAGGAATTTGTA
ACGATTAAGAGCTGGGCTCATCTAGATATTGCTGGCGTGATGGATAATTC
CGGAGGGGAATTACCGTATCTCAACTCCGGAATGTCAGgTCGTCCGACAA
GAACTTTGGTTGAAACCGTCCGAAATATTTTTACGtagAGTGGCGGTATT
TCGATCAAACCTAGTAGTGGGATGGGTTTGATGCGGGGAGACATGGGTGG
AGCCGCTTGCGTTTTGGCTACGCTGCACATCATTGCAAAATTGAAGCTAC
CTGTCAATTTATCAGTGCTGGTTCCCATGGCAGAAAATATGCCGTCTGAT
CGAGCAGCCAAACCAGGAGATGTTTTTACTGCACTCAATGGAAAGACCGT
CGAGGTCGATAACACAGATGCTGAAGGACGAATGATCCTGGCGGACGCTT
TATGCTACGCGGACGAATTTCAACCGTCTACAATAATCGATGTCGCTACA
CTTACAGGTGCAATCGACGTGGCGTTAGGTGGGGCAGCCGCTGGAGCTTA
CACAACGTGTAACAACTTATGGCAGAACATGGAACAGGCCAGTTACACGA
CAGGCGATCGTTTTTGGAGAATGCCTTTGTACAAACATTACACCAAACAA
ATGAAATGTAGCTTGACTGCTGATCTACGAAACACGCAGAAAAAAGCACG
TTCCGCTGGGTCCGCAACTGCTGCCGCTTTTTTAAAGGAATTTGTAACGA
TTAAGAGCTGGGCTCATCTAGATATTGCTGGCGTGATGGATAATTCCGGA
GGGGAATTACCGTATCTCAACTCCGGAATGTCAGgTCGTCCGACAAGAAC
TTTGGTTGAAACCGTCCGAAATATTTTTACGtagAGTGGCGGTATTTCGA
TCAAACCTAGTAGTGGGATGGGTTTGATGCGGGGAGACATGGGTGGAGCC
GCTTGCGTTTTGGCTACGCTGCACATCATTGCAAAATTGAAGCTACCTGT
CAATTTATCAGTGCTGGTTCCCATGGCAGAAAATATGCCGTCTGATCGAG
CAGCCAAACCAGGAGATGTTTTTACTGCACTCAATGGAAAGACCGTCGAG
GTCGATAACACAGATGCTGAAGGACGAATGATCCTGGCGGACGCTTTATG
CTACGCGGACGAATTTCAACCGTCTACAATAATCGATGTCGCTACACTTA
CAGGTGCAATCGACGTGGCGTTAGGTGGGGCAGCCGCTGGAGCTTACACA
ACGTGTAACAACTTATGGCAGAACATGGAACAGGCCAGTTACACGACAGG
CGATCGTTTTTGGAGAATGCCTTTGTACAAACATTACACCAAACAAATGA
AATGTAGCTTGACTGCTGATCTACGAAACACGCAGAAAAAAGCACGTTCC
GCTGGGTCCGCAACTGCTGCCGCTTTTTTAAAGGAATTTGTAACGATTAA
GAGCTGGGCTCATCTAGATATTGCTGGCGTGATGGATAATTCCGGAGGGG
AATTACCGTATCTCAACTCCGGAATGTCAGgTCGTCCGACAAGAACTTTG
GTTGAAACCGTCCGAAATATTTTTACGtagAGTGGCGGTATTTCGATCAA
ACCTAGTAGTGGGATGGGTTTGATGCGGGGAGACATGGGTGGAGCCGCTT
GCGTTTTGGCTACGCTGCACATCATTGCAAAATTGAAGCTACCTGTCAAT
TTATCAGTGCTGGTTCCCATGGCAGAAAATATGCCGTCTGATCGAGCAGC
CAAACCAGGAGATGTTTTTACTGCACTCAATGGAAAGACCGTCGAGGTCG
ATAACACAGATGCTGAAGGACGAATGATCCTGGCGGACGCTTTATGCTAC
GCGGACGAATTTCAACCGTCTACAATAATCGATGTCGCTACACTTACAGG
TGCAATCGACGTGGCGTTAGGTGGGGCAGCCGCTGGAGCTTACACAACGT
GTAACAACTTATGGCAGAACATGGAACAGGCCAGTTACACGACAGGCGAT
CGTTTTTGGAGAATGCCTTTGTACAAACATTACACCAAACAAATGAAATG
TAGCTTGACTGCTGATCTACGAAACACGCAGAAAAAAGCACGTTCCGCTG
GGTCCGCAACTGCTGCCGCTTTTTTAAAGGAATTTGTAACGATTAAGAGC
TGGGCTCATCTAGATATTGCTGGCGTGATGGATAATTCCGGAGGGGAATT
ACCGTATCTCAACTCCGGAATGTCAGgTCGTCCGACAAGAACTTTGGTTG
AAACCGTCCGAAATATTTTTACGtagAGTGGCGGTATTTCGATCAAACCT
AGTAGTGGGATGGGTTTGATGCGGGGAGACATGGGTGGAGCCGCTTGCGT
TTTGGCTACGCTGCACATCATTGCAAAATTGAAGCTACCTGTCAATTTAT
CAGTGCTGGTTCCCATGGCAGAAAATATGCCGTCTGATCGAGCAGCCAAA
CCAGGAGATGTTTTTACTGCACTCAATGGAAAGACCGTCGAGGTCGATAA
CACAGATGCTGAAGGACGAATGATCCTGGCGGACGCTTTATGCTACGCGG
ACGAATTTCAACCGTCTACAATAATCGATGTCGCTACACTTACAGGTGCA
ATCGACGTGGCGTTAGGTGGGGCAGCCGCTGGAGCTTACACAACGTGTAA
CAACTTATGGCAGAACATGGAACAGGCCAGTTACACGACAGGCGATCGTT
TTTGGAGAATGCCTTTGTACAAACATTACACCAAACAAATGAAATGTAGC
TTGACTGCTGATCTACGAAACACGCAGAAAAAAGCACGTTCCGCTGGGTC
CGCAACTGCTGCCGCTTTTTTAAAGGAATTTGTAACGATTAAGAGCTGGG
CTCATCTAGATATTGCTGGCGTGATGGATAATTCCGGAGGGGAATTACCG
TATCTCAACTCCGGAATGTCAGgTCGTCCGACAAGAACTTTGGTTGAAAC
CGTCCGAAATATTTTTACGtag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004580XLOC_004580Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008123-proteinTCONS_00008123-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008123-exon-sc0000082-1491911889:456979..457195TCONS_00008123-exon-sc0000082-1491911889:456979..457195Clytia hemisphaericaexon
TCONS_00008123-exon-sc0000082-1510915933:456979..457195TCONS_00008123-exon-sc0000082-1510915933:456979..457195Clytia hemisphaericaexon
TCONS_00008123-exon-sc0000082-1575043694:456979..457195TCONS_00008123-exon-sc0000082-1575043694:456979..457195Clytia hemisphaericaexon
TCONS_00008123-exon-sc0000082-1491911889:463130..463232TCONS_00008123-exon-sc0000082-1491911889:463130..463232Clytia hemisphaericaexon
TCONS_00008123-exon-sc0000082-1510915933:463130..463232TCONS_00008123-exon-sc0000082-1510915933:463130..463232Clytia hemisphaericaexon
TCONS_00008123-exon-sc0000082-1575043694:463130..463232TCONS_00008123-exon-sc0000082-1575043694:463130..463232Clytia hemisphaericaexon
TCONS_00008123-exon-sc0000082-1491911889:463437..463516TCONS_00008123-exon-sc0000082-1491911889:463437..463516Clytia hemisphaericaexon
TCONS_00008123-exon-sc0000082-1510915933:463437..463516TCONS_00008123-exon-sc0000082-1510915933:463437..463516Clytia hemisphaericaexon
TCONS_00008123-exon-sc0000082-1575043694:463437..463516TCONS_00008123-exon-sc0000082-1575043694:463437..463516Clytia hemisphaericaexon
TCONS_00008123-exon-sc0000082-1491911889:463634..463746TCONS_00008123-exon-sc0000082-1491911889:463634..463746Clytia hemisphaericaexon
TCONS_00008123-exon-sc0000082-1510915933:463634..463746TCONS_00008123-exon-sc0000082-1510915933:463634..463746Clytia hemisphaericaexon
TCONS_00008123-exon-sc0000082-1575043694:463634..463746TCONS_00008123-exon-sc0000082-1575043694:463634..463746Clytia hemisphaericaexon
TCONS_00008123-exon-sc0000082-1491911889:465772..465808TCONS_00008123-exon-sc0000082-1491911889:465772..465808Clytia hemisphaericaexon
TCONS_00008123-exon-sc0000082-1510915933:465772..465808TCONS_00008123-exon-sc0000082-1510915933:465772..465808Clytia hemisphaericaexon
TCONS_00008123-exon-sc0000082-1575043694:465772..465808TCONS_00008123-exon-sc0000082-1575043694:465772..465808Clytia hemisphaericaexon
TCONS_00008123-exon-sc0000082-1491911889:466633..466729TCONS_00008123-exon-sc0000082-1491911889:466633..466729Clytia hemisphaericaexon
TCONS_00008123-exon-sc0000082-1510915933:466633..466729TCONS_00008123-exon-sc0000082-1510915933:466633..466729Clytia hemisphaericaexon
TCONS_00008123-exon-sc0000082-1575043694:466633..466729TCONS_00008123-exon-sc0000082-1575043694:466633..466729Clytia hemisphaericaexon
TCONS_00008123-exon-sc0000082-1491911889:467725..467986TCONS_00008123-exon-sc0000082-1491911889:467725..467986Clytia hemisphaericaexon
TCONS_00008123-exon-sc0000082-1510915933:467725..467986TCONS_00008123-exon-sc0000082-1510915933:467725..467986Clytia hemisphaericaexon
TCONS_00008123-exon-sc0000082-1575043694:467725..467986TCONS_00008123-exon-sc0000082-1575043694:467725..467986Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000082supercontigsc0000082:456979..467986 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
41.7235	15.8414	0.334846	10.122	28.4026	0.620521	18.8061	0.549791	28.4102	29.3116	31.0702	10.8549	0.49923	0.304905	34.9546	26.4475	41.951	23.2349	0.229207	0.211501	0.40839	17.5777	0.749755	13.9312	25.1543	29.6696	0.549043	16.5537	0.775313	14.8202
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR011356Leucine_aapep/pepB
IPR000819Peptidase_M17_C
Vocabulary: Biological Process
TermDefinition
GO:0019538protein metabolic process
GO:0006508proteolysis
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
GO:0005622intracellular
Vocabulary: Molecular Function
TermDefinition
GO:0030145manganese ion binding
GO:0008235metalloexopeptidase activity
GO:0004177aminopeptidase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0019538 protein metabolic process
biological_process GO:0006508 proteolysis
cellular_component GO:0005737 cytoplasm
cellular_component GO:0005622 intracellular
molecular_function GO:0004177 aminopeptidase activity
molecular_function GO:0030145 manganese ion binding
molecular_function GO:0008235 metalloexopeptidase activity
Blast
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BLAST of TCONS_00008123 vs. Swiss-Prot (Human)
Match: AMPL (Cytosol aminopeptidase OS=Homo sapiens GN=LAP3 PE=1 SV=3)

HSP 1 Score: 237.654 bits (605), Expect = 2.291e-73
Identity = 138/224 (61.61%), Postives = 165/224 (73.66%), Query Frame = 2 
Query:    2 SGGISIKPSSGMGLMRGDMGGAACVLATLHIIAKLKLPVNLSVLVPMAENMPSDRAAKPGDVFTALNGKTVEVDNTDAEGRMILADALCYADEFQPSTIIDVATLTXXXXXXXXXXXXXXYTTCNNLWQNMEQASYTTGDRFWRMPLYKHYTKQMKCSLTADLRNTQKKXXXXXXXXXXXFLKEFVTIKSWAHLDIAGVMDNSGGELPYLNSGMSGRPTRTLVE 673
            SGGISIK S+ M LMR DMGGAA + + +   AKL LP+N+  L P+ ENMPS +A KPGDV  A NGKT++VDNTDAEGR+ILADALCYA  F P  I++ ATLTGA+DVALG  A G +T  + LW  + +AS  TGDR WRMPL++HYT+Q+     AD+ N   K RSAG+ TAAAFLKEFVT   WAHLDIAGVM N   E+PYL  GM+GRPTRTL+E
Sbjct:  288 SGGISIKASANMDLMRADMGGAATICSAIVSAAKLNLPINIIGLAPLCENMPSGKANKPGDVVRAKNGKTIQVDNTDAEGRLILADALCYAHTFNPKVILNAATLTGAMDVALGSGATGVFTNSSWLWNKLFEASIETGDRVWRMPLFEHYTRQVVDCQLADVNNI-GKYRSAGACTAAAFLKEFVTHPKWAHLDIAGVMTNK-DEVPYLRKGMTGRPTRTLIE 509
The following BLAST results are available for this feature:
BLAST of TCONS_00008123 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
AMPL2.291e-7361.61Cytosol aminopeptidase OS=Homo sapiens GN=LAP3 PE=... [more]
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