TCONS_00008110 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008110
Unique NameTCONS_00008110
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length387

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008110 ID=TCONS_00008110|Name=TCONS_00008110|organism=Clytia hemisphaerica|type=transcript|length=387bp
CTTTCCAACGGCATGGGTTTTATAACCAGCTTTCTTTAGATACTGTGGTA
ACAACTTTTCTTTCAATCCAACGCCCCATGCATTTGCACCGTATATCGTA
CCCGATTGCATACCGGTATTGATAGGGTACCGTCCGGTCAGCAAAGCACT
ACGGGTGGGTGAACAGTTTGGGAGAACGTAGTAATTATTGAGTATGATTC
CTTTGTTTGCCAGGAGGTCGAGATTGGGTGTTGGTATCTGTGGACAACCA
TGGAAGCTGACATCGTTGAAACCCTGGAAAGAAAGATCGAACATGATCga
atattgaaaaaagaatGAACCGAGATAAATCAAAAGTAATAGAAATGCGT
TATGTTGGCAATGTTATCCATCACCAGTGCAGCTAAC
Run BLAST on NCBI

transcript from alignment at sc0000082:280579..281451+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008110 ID=TCONS_00008110|Name=TCONS_00008110|organism=Clytia hemisphaerica|type=transcript|length=873bp|location=Sequence derived from alignment at sc0000082:280579..281451+ (Clytia hemisphaerica)
CTTTCCAACGGCATGGGTTTTATAACCAGCTTTCTTTAGATACTGTGGTA
ACAACTTTTCTTTCAATCCAACGCCCCATGCATTTGCACCGTATATCGTA
CCCGATTGCATACCtagaatagaaaaataaaaaaattaaaatatttttcg
acgGTACCTTTTTTCCACTTTAAACTTTTGGACATTGCGTTAAAGATTGG
GCCTTAGGTACTTTGGTACTTAGgtaaaaatgggtgctgggtatgtgcgg
ccGATAAAGGTCGGTTATTTCACCCtctaaagtctctctaaggattacaa
aaatcagaaaatttcaaagtagtctctataagggtcggaaaattcacaat
CTTTAGGAATTCGAGACAAAAAATTGTTAAAGTCTCTCTAACGTAAGGGC
CACTTTTCCACTCAAAATTTATGCGTTTTGTATACAACACTTGTGTGTTA
AAATAAATCTTCTTCTAAACCCATTCAGTGCCACTTCACTGGCATCGTAT
GAGATCCAGGTCCTGACAAAGAACGAaagcaacattttcaaaatgaatta
GAAAGTattcatttgaaaataaaagttaaaatgcaAACTGAACACATACC
GGTATTGATAGGGTACCGTCCGGTCAGCAAAGCACTACGGGTGGGTGAAC
AGTTTGGGAGAACGTAGTAATTATTGAGTATGATTCCTTTGTTTGCCAGG
AGGTCGAGATTGGGTGTTGGTATCTGTGGACAACCATGGAAGCTGACATC
GTTGAAACCCTGGAAAGAAAGATCGAACATGATCgaatattgaaaaaaga
atGAACCGAGATAAATCAAAAGTAATAGAAATGCGTTATGTTGGCAATGT
TATCCATCACCAGTGCAGCTAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004575XLOC_004575Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008110-exon-sc0000082-1491911889:280579..280687TCONS_00008110-exon-sc0000082-1491911889:280579..280687Clytia hemisphaericaexon
TCONS_00008110-exon-sc0000082-1510915933:280579..280687TCONS_00008110-exon-sc0000082-1510915933:280579..280687Clytia hemisphaericaexon
TCONS_00008110-exon-sc0000082-1575043694:280579..280687TCONS_00008110-exon-sc0000082-1575043694:280579..280687Clytia hemisphaericaexon
TCONS_00008110-exon-sc0000082-1491911889:281174..281451TCONS_00008110-exon-sc0000082-1491911889:281174..281451Clytia hemisphaericaexon
TCONS_00008110-exon-sc0000082-1510915933:281174..281451TCONS_00008110-exon-sc0000082-1510915933:281174..281451Clytia hemisphaericaexon
TCONS_00008110-exon-sc0000082-1575043694:281174..281451TCONS_00008110-exon-sc0000082-1575043694:281174..281451Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000082supercontigsc0000082:280579..281451 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.25412	1.84157	0.677018	0	7.52124	4.26035	11.464	14.0867	5.08886	8.99671	5.88775	3.54467	4.56346	6.22743	2.55679	3.2726	7.80737	6.58954	9.81903	7.10993	6.35604	4.98667	2.25283	3.3931	18.1026	19.516	0	0	1.62487	3.60416
Blast
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BLAST of TCONS_00008110 vs. Swiss-Prot (Human)
Match: ARSB (Arylsulfatase B OS=Homo sapiens GN=ARSB PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 3.407e-26
Identity = 53/91 (58.24%), Postives = 64/91 (70.33%), Query Frame = -1 
Query:    1 GFNDVSFHGCPQIPTPNLDLLANKGIILNNYYVLPNCSPTRSALLTGRYPINTGMQSGTIYGANAWGVGLKEKLLPQYLKKAGYKTHAVGK 273
            G+NDV FHG  +I TP+LD LA  G++L+NYY  P C+P+RS LLTGRY I TG+Q   I+      V L EKLLPQ LK+AGY TH VGK
Sbjct:   56 GWNDVGFHGS-RIRTPHLDALAAGGVLLDNYYTQPLCTPSRSQLLTGRYQIRTGLQHQIIWPCQPSCVPLDEKLLPQLLKEAGYTTHMVGK 145
The following BLAST results are available for this feature:
BLAST of TCONS_00008110 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ARSB3.407e-2658.24Arylsulfatase B OS=Homo sapiens GN=ARSB PE=1 SV=1[more]
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