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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008103 ID=TCONS_00008103|Name=TCONS_00008103|organism=Clytia hemisphaerica|type=transcript|length=1271bp
TAGCGGTGCGTGATGGTAACCCAGAATCCAAGTCCAAAATCTGAAACATC
TGAACGCTGAATCCCAGTCTGGAAATTTCCATTTAAATGGTGTACACTAC
GCCAAATATATTCAGTAATAATTGAAAATGAGCAACGCTGAAAGAAACCC
TGATAACTTTGCATTATCCGTTAAAGAAGGACTTGAAGGTAATGATGTTT
CCAGTTTGAAGGAATTGTATAAATCACTTTCTGAAGAAGAAAACATAGAA
CATGCTAAAACTGTTTGCACTTCCATGTATCACTATACGTTGGAATGCAT
CCTAGACAAGATCAAATCTAAAGAAGCCAATACAATGACCAAGTATTATG
CATGGCATTTCTTACAACTTGGAACAAGCTCCTCAGATATAGTTGAAAAA
GTGCAGAAGGACTTTCAGTTATTACCAGCACTTATGAATCTACATACAGA
AGATTTTGACGATAACTTATTAGATTCTCTACATGCTATTTCGTTGACCT
TTTTGGTAGTCATGCTTGGAGTTGCGGATGACTTATATTATGATCATTTT
GCTGAATGTGGCGCTTTATCTTTTGTTCATAACATGTTAGCACAAACTTC
ATTATCATCAACAGACAGTCAAATAGAGTCACTCATTTTATTATTGAATC
TTGTACTGGAAGGCACGAGTGCTTGTAAAAACCAGTTAATTAATTTGGAC
TTTGAGAAATTGTTAGCAAAGAAGATTAAAGAGCGGCAACAATGTAATGA
GAATCTATTAAAAGTATCACAAGTGACTCATCAGAAATTACTATTACTTA
CAAGTGAACACCAAACATTTATTGAAACTTTTCGTCACGGATTTCAAGAG
GTAgctaagaaacaaaaaatatatcaaGAAGTCAAGACTTGCTCTTTTGG
TACCTGTGAAGTGACTTATAACTCTCAATTCAAGAGGTGTTCCAGGTGTA
AAACAACAACTTATTGCAGCAAAGAGTGTCAAgtgaaacactggaaaaat
ggACATTCCAAAACCTGCGTCCCTGTCACCTAAGTAATCGTTTCGTATAG
GTCAACCAAATCCTTTGATTCAGGAATTGAAATCGATTTTGCGTCGTCAT
CTTCAGGGGTACTCTCATTCGCCAAAAACACATTTCATTATTACAATATG
AtagattttgtttattttattcagatttcaatttGTTGATCAATTTTGTA
GTCTTGAGATGTGACAAAGATTTGAATAATGTAATAACTTCACACTCAAA
GTTTACTATTTTATAATGACC Run BLAST on NCBI protein sequence of TCONS_00008103-protein >TCONS_00008103-protein ID=TCONS_00008103-protein|Name=TCONS_00008103-protein|organism=Clytia hemisphaerica|type=polypeptide|length=301bp
MSNAERNPDNFALSVKEGLEGNDVSSLKELYKSLSEEENIEHAKTVCTSM
YHYTLECILDKIKSKEANTMTKYYAWHFLQLGTSSSDIVEKVQKDFQLLP
ALMNLHTEDFDDNLLDSLHAISLTFLVVMLGVADDLYYDHFAECGALSFV
HNMLAQTSLSSTDSQIESLILLLNLVLEGTSACKNQLINLDFEKLLAKKI
KERQQCNENLLKVSQVTHQKLLLLTSEHQTFIETFRHGFQEVAKKQKIYQ
EVKTCSFGTCEVTYNSQFKRCSRCKTTTYCSKECQVKHWKNGHSKTCVPV
T Run BLAST on NCBI transcript from alignment at sc0000082:186010..190354+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00008103 ID=TCONS_00008103|Name=TCONS_00008103|organism=Clytia hemisphaerica|type=transcript|length=4345bp|location=Sequence derived from alignment at sc0000082:186010..190354+ (Clytia hemisphaerica)
TAGCGGTGCGTGATGGTAACCCAGAATCCAAGTCCAAAATCTGAAACATC
TGAACGCTGAATCCCAGTCTGGAAATTTCCATTTAAATGGTGTACACTAC
GCCAAATATATTCAGTGTGAGTGGGagaactttctttgtttttacatCTG
AATATAGTTTAAAATTCAGCTTTGCATCATTTCCAGACTGGTCTGAGTCT
TGTGTACTGTGAGCTATTATGGGATGGATGGTTTCGCTACTTGTTTCACT
TCTTTTTGGCTTCGGGGAATAGATGCTTTGGTGAACGCGACAGTCTTTTA
ATTAGAGTAGTTAGTTATTAATTACTCCACATAcgttactttccctcagc
caataaaaacatgataaattatcttaTCTCTAGTCTAGGTAACTGGCTGC
TGTGTGCGCGCTGCCTGTGTGTGGTGGTggagtattatttgttttttttg
gagtAATATTTGGAGTTTATTATTTCTAATAAAGTTAATTAATGAAGATa
cattataatattttataGTATTTTATCATTACCCACCTAAAATTCACAAC
TAATATTACTTCTTAGCattcaaatttcaaccaaactCATGAATAATCTC
ATAACTTTAATCTCTTAGTCTTAAGTCTTACACTTTCCAAGCTTGGTCTT
GGACACACTTaggggtcagtcacaaatcaattttaagttagaagaacgtc
aattgacgtatatgggtgggtgggttaaaggttgttgacgtttttcagaa
acatcgatttttcattccatgccaaatattacttNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTCT
TTCTGTCGCTACAtactacggagataattaattacaggaattttgtgaac
aagtttagaaattatctccatttctttttttttaaatataaactatgcga
gccgtagtgaaaatcaagatggctgacgaaacagcaATTGGCAATGAAGG
cagtttttatcaattttcgggtgtttgacgtttttgggtgtgggtgggtg
ggtcagcttttaaaacgtcaattgacgttcttctaacctagaatcgattt
gtgactgacccctTATCACCCCCCTTTTCTTGTTAGCCCCTTGActttta
gaatgattttaatatttgttgatatttatgaataaaattattttattaaa
caATCAAATGGAAAAGAGTGTAACTAAGTTATATCTTTTCGGGGGCTTTG
TAAGGGGTACcaaaatttgcttaaaaaattggGAAGGGGTCAAACAAGAA
AATGGGGCTTGGAAATTTTGGTAAACTTAATGGTATTTTAAAGCAACAAT
ATGTACCATCATATGTTAATAAAAACGCTAGTTATATTGTTATATGGTGA
AGTTAATGGCCCCTGACTTATATATTTTGTATTCTTTGATCACTTTGACA
CATACAGCATATTTCCTTCGAAACAGACTTTTTGTAAATGAAGAGGGTAA
GACTTAATTACAGAAGGGGcttggcagttacatcaaaatgcctcNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Naataattggattgtaacatcgagttaagtctcttttgttaagtcaccag
ggggtaaataaaacagaccttgatacatttatcgtttgtttcaacttgac
gatttgtttaaaactcagcctcctaaatatttggggtaggtaaaaataag
tacaaagaaattcatacttttccaacccggcgaatctactaaaaaagaag
cgaacaataaaatataattaccctttccaaataaacctcttcggtggcga
gggtagtctactctgacgtaattgtaaaatttatgtgatgggagtttgac
atagtaatgtaatgttgtttggggaattatgNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNtactctgttctcacacttatgtct
ttttttttcgcgtccttttccgtgattacttttatttatatttttaaaga
caggtaagaaggcatattgatgtaactgcttgGGTATAaagggggatgaa
ataaacctaggggctTCATAAACCTCTGCAAACTATGGTTAAAAAAAACT
GGATAGaactgtttttaaatatttgcaaAGTATCGTAACATTTTTTTGAT
TAGTCACTTAGCTTTTAGAATGATGAATGGTCCCTGCAAGCCATAAGACC
AGCAGTGACTTGcttttgaatttgaatattCTGAAGCTTTTAATACAATT
TGGGTATCAGACTCGAGAAAAAACGCCGTTGTATTGCTATCTATTATAAT
ATGTTCAGACTCactattaaaaactgttttttgtttCTAGAATAATTGAA
AATGAGCAACGCTGAAAGAAACCCTGATAACTTTGCATTATCCGTTAAAG
AAGGACTTGAAGGTAATGATGTTTCCAGTTTGAAGGAATTGTATAAATCA
CTTTCTGAAGAAGAAAACATAGAACATGCTAAAACTGTTTGCACTTCCAT
GTATCACTATACGTTGGAATGCATCCTAGACAAGATCAAATCTAAAGAAG
CCAATACAATGACCAAGTATTATGCATGGCATTTCTTACAACTTGGAACA
AGCTCCTCAGATATAGTTGAAAAAGTGCAGAAGGACTTTCAGTTATTACC
AGCACTTATGAATCTACATACAGAAGATTTTGACGATAACTTATTAGATT
CTCTACATGCTATTTCGTTGACCTTTTTGGTAGTCATGCTTGGAGTTGCG
GATGACTTATATTATGATCATTTTGCTGAATGTGGCGCTTTATCTTTTGT
TCATAACATGTTAGCACAAACTTCATTATCATCAACAGACAGTCAAATAG
AGTCACTCATTTTATTATTGAATCTTGTACTGGAAGGCACGAGTGCTTGT
AAAAACCAGTTAATTAATTTGGACTTTGAGAAATTGTTAGCAAAGAAGAT
TAAAGAGCGGCAACAATGTAATGAGAATCTATTAAAAGTATCACAAGTGA
CTCATCAGAAATTACTATTACTTACAAGTGAACACCAAACATTTATTGAA
ACTTTTCGTCACGGATTTCAAGAGGTAgctaagaaacaaaaaatatatca
aGAAGTCAAGACTTGCTCTTTTGGTACCTGTGAAGTGACTTATAACTCTC
AATTCAAGAGGTGTTCCAGGTGTAAAACAACAACTTATTGCAGCAAAGAG
TGTCAAgtgaaacactggaaaaatggACATTCCAAAACCTGCGTCCCTGT
CACCTAAGTAATCGTTTCGTATAGGTCAACCAAATCCTTTGATTCAGGAA
TTGAAATCGATTTTGCGTCGTCATCTTCAGGGGTACTCTCATTCGCCAAA
AACACATTTCATTATTACAATATGAtagattttgtttattttattcagat
ttcaatttGTTGATCAATTTTGTAGTCTTGAGATGTGACAAAGATTTGAA
TAATGTAATAACTTCACACTCAAAGTTTACTATTTTATAATGACC Coding sequence (CDS) from alignment at sc0000082:186010..190354+ >TCONS_00008103 ID=TCONS_00008103|Name=TCONS_00008103|organism=Clytia hemisphaerica|type=CDS|length=906bp|location=Sequence derived from alignment at sc0000082:186010..190354+ (Clytia hemisphaerica)
ATGAGCAACGCTGAAAGAAACCCTGATAACTTTGCATTATCCGTTAAAGA
AGGACTTGAAGGTAATGATGTTTCCAGTTTGAAGGAATTGTATAAATCAC
TTTCTGAAGAAGAAAACATAGAACATGCTAAAACTGTTTGCACTTCCATG
TATCACTATACGTTGGAATGCATCCTAGACAAGATCAAATCTAAAGAAGC
CAATACAATGACCAAGTATTATGCATGGCATTTCTTACAACTTGGAACAA
GCTCCTCAGATATAGTTGAAAAAGTGCAGAAGGACTTTCAGTTATTACCA
GCACTTATGAATCTACATACAGAAGATTTTGACGATAACTTATTAGATTC
TCTACATGCTATTTCGTTGACCTTTTTGGTAGTCATGCTTGGAGTTGCGG
ATGACTTATATTATGATCATTTTGCTGAATGTGGCGCTTTATCTTTTGTT
CATAACATGTTAGCACAAACTTCATTATCATCAACAGACAGTCAAATAGA
GTCACTCATTTTATTATTGAATCTTGTACTGGAAGGCACGAGTGCTTGTA
AAAACCAGTTAATTAATTTGGACTTTGAGAAATTGTTAGCAAAGAAGATT
AAAGAGCGGCAACAATGTAATGAGAATCTATTAAAAGTATCACAAGTGAC
TCATCAGAAATTACTATTACTTACAAGTGAACACCAAACATTTATTGAAA
CTTTTCGTCACGGATTTCAAGAGGTAgctaagaaacaaaaaatatatcaa
GAAGTCAAGACTTGCTCTTTTGGTACCTGTGAAGTGACTTATAACTCTCA
ATTCAAGAGGTGTTCCAGGTGTAAAACAACAACTTATTGCAGCAAAGAGT
GTCAAgtgaaacactggaaaaatggACATTCCAAAACCTGCGTCCCTGTC
ACCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00008103-exon-sc0000082-1491911889:186010..186125 | TCONS_00008103-exon-sc0000082-1491911889:186010..186125 | Clytia hemisphaerica | exon |
| TCONS_00008103-exon-sc0000082-1510915933:186010..186125 | TCONS_00008103-exon-sc0000082-1510915933:186010..186125 | Clytia hemisphaerica | exon |
| TCONS_00008103-exon-sc0000082-1575043694:186010..186125 | TCONS_00008103-exon-sc0000082-1575043694:186010..186125 | Clytia hemisphaerica | exon |
| TCONS_00008103-exon-sc0000082-1491911889:189200..190354 | TCONS_00008103-exon-sc0000082-1491911889:189200..190354 | Clytia hemisphaerica | exon |
| TCONS_00008103-exon-sc0000082-1510915933:189200..190354 | TCONS_00008103-exon-sc0000082-1510915933:189200..190354 | Clytia hemisphaerica | exon |
| TCONS_00008103-exon-sc0000082-1575043694:189200..190354 | TCONS_00008103-exon-sc0000082-1575043694:189200..190354 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000082 | supercontig | sc0000082:186010..190354 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR002893 | Znf_MYND |
Blast
The following BLAST results are available for this feature:
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