TCONS_00008091 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008091
Unique NameTCONS_00008091
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length204

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008091 ID=TCONS_00008091|Name=TCONS_00008091|organism=Clytia hemisphaerica|type=transcript|length=204bp
AACATTTACACACTTTTGGAACAAACTTAAATGACTTTCTACTTCCATAT
TCATTAACAAATATAATAATTAATTATTAGAAATAATTctcaacataaaa
aataaaaaccataTTTTCAGATAAATCCTCCAACTATAAAATCTAAGATC
ATAGCCGCTGAAGAAAGACTTAGTATCAAATACAGACGGAAGGGTTGGCC
GCGC
Run BLAST on NCBI

transcript from alignment at sc0000081:348517..348720

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008091 ID=TCONS_00008091|Name=TCONS_00008091|organism=Clytia hemisphaerica|type=transcript|length=204bp|location=Sequence derived from alignment at sc0000081:348517..348720 (Clytia hemisphaerica)
GCGCGGCCAACCCTTCCGTCTGTATTTGATACTAAGTCTTTCTTCAGCGG
CTATGATCTTAGATTTTATAGTTGGAGGATTTATCTGAAAAtatggtttt
tattttttatgttgagAATTATTTCTAATAATTAATTATTATATTTGTTA
ATGAATATGGAAGTAGAAAGTCATTTAAGTTTGTTCCAAAAGTGTGTAAA
TGTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004561XLOC_004561Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008091-exon-sc0000081-1491911889:348517..348720TCONS_00008091-exon-sc0000081-1491911889:348517..348720Clytia hemisphaericaexon
TCONS_00008091-exon-sc0000081-1510915933:348517..348720TCONS_00008091-exon-sc0000081-1510915933:348517..348720Clytia hemisphaericaexon
TCONS_00008091-exon-sc0000081-1575043694:348517..348720TCONS_00008091-exon-sc0000081-1575043694:348517..348720Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000081supercontigsc0000081:348517..348720 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
7.86794	6.13798	0	0	2.12207	5.03067	8.09238	13.258	2.65206	4.92751	0	2.096	1.04654	1.08685	0.893535	1.9178	2.36257	1.21078	0	5.25126	1.52143	0	9.02122	3.28064	6.75796	4.52349	4.3154	0	5.23968	5.3384
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00008091 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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