TCONS_00008078 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008078
Unique NameTCONS_00008078
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length586

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008078 ID=TCONS_00008078|Name=TCONS_00008078|organism=Clytia hemisphaerica|type=transcript|length=586bp
TNCCCGCATCCTTTACCTAAAAACTCGAAAACATTTCTTTATCCCCGCAT
CCTTTACCTAAAAACTcgaaaatattgtttttattcCCGTATCCTTTACC
TAAAAACTcgaaaatattgtttttatcCCCGCATTCTTTACCTAAAAACT
CGAAAACATTGCTTTTATCCCCGTTTGTACACTTCATCTAAAAGAATCGC
ATTGAATTCTACGTCATTCTAACCTTCAaataagaatcaaaacaatGCTC
AAAGACGCACGTACGGTTGATTATTTGTTCGCGCGGGCGAACTATATGAC
ATGGTTGAATGCTTTTCGAACGTTTCGAACGTTTACACAAACCGCACCAA
TTAGGTCACACTTGACTgaagaaaacacaaaaaaaatctttcaagagaac
ttttgaaaaatgcgATATACTAgaaaagtgggtttttaaaatACACATCT
TCGGTTTAATTTGATAATAAGTTTGTTGAAAATATTGTTGAGATAATaag
tgaaataattttagagaaatttttaaGTGTTCTTTTTAAGACATTATTCT
TGATAATTATAATAATTGAGTTTTACATTGATTGAG
Run BLAST on NCBI

transcript from alignment at sc0000081:167844..168429

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008078 ID=TCONS_00008078|Name=TCONS_00008078|organism=Clytia hemisphaerica|type=transcript|length=586bp|location=Sequence derived from alignment at sc0000081:167844..168429 (Clytia hemisphaerica)
CTCAATCAATGTAAAACTCAATTATTATAATTATCAAGAATAATGTCTTA
AAAAGAACACttaaaaatttctctaaaattatttcacttATTATCTCAAC
AATATTTTCAACAAACTTATTATCAAATTAAACCGAAGATGTGTatttta
aaaacccacttttcTAGTATATcgcatttttcaaaagttctcttgaaaga
ttttttttgtgttttcttcAGTCAAGTGTGACCTAATTGGTGCGGTTTGT
GTAAACGTTCGAAACGTTCGAAAAGCATTCAACCATGTCATATAGTTCGC
CCGCGCGAACAAATAATCAACCGTACGTGCGTCTTTGAGCattgttttga
ttcttattTGAAGGTTAGAATGACGTAGAATTCAATGCGATTCTTTTAGA
TGAAGTGTACAAACGGGGATAAAAGCAATGTTTTCGAGTTTTTAGGTAAA
GAATGCGGGgataaaaacaatattttcgAGTTTTTAGGTAAAGGATACGG
gaataaaaacaatattttcgAGTTTTTAGGTAAAGGATGCGGGGATAAAG
AAATGTTTTCGAGTTTTTAGGTAAAGGATGCGGGNA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004548XLOC_004548Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008078-exon-sc0000081-1491911889:167844..168429TCONS_00008078-exon-sc0000081-1491911889:167844..168429Clytia hemisphaericaexon
TCONS_00008078-exon-sc0000081-1510915933:167844..168429TCONS_00008078-exon-sc0000081-1510915933:167844..168429Clytia hemisphaericaexon
TCONS_00008078-exon-sc0000081-1575043694:167844..168429TCONS_00008078-exon-sc0000081-1575043694:167844..168429Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000081supercontigsc0000081:167844..168429 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.188211	0.013989	0	0	1.46921	0.701982	1.0288	1.62899	1.04303	1.68387	1.97776	0.492394	0.241481	0.152725	0	0	0	0.186525	0	0.192889	0	0.152538	0	0	1.39414	1.14215	0.129037	0.458197	0.557916	0.201376
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00008078 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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