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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008057 ID=TCONS_00008057|Name=TCONS_00008057|organism=Clytia hemisphaerica|type=transcript|length=908bp
CAGCGATTGAATCcaatgctttattggaaataAACAACAATCGATCAGAT
TTCAAGTTGTTCAAGTAAAGGAAAACATGCAGAAAAACCTGATGAGTGAA
TGACCTGATGATCAAAATGTATTGCCTTTACAATAGTATCGCTGATCGAA
GGAAGGACGAAAGATATGCAAACCCAAAACTTACATAGTATAAGAGgtAC
TCAGCAAGATTTACTGTTTATATTCCACATCCCAACGCTTGAAGAGAAGA
ATGAGACATTGAGAAATTTCTTCGTTTTTTAAATGTTCAGGATAAAGAAG
GAGGAGTAGAAATAGAAACGAAATGAAAACTCTGCACCCCAGGAAATCAC
ACACAGCAGAACATCTAAAAACATGTAAATAATATAAACCCTTTCTTATA
CAAATTTACAAGCTTGAATAACACCAGAAAATTCGAATTCCAAGCAGTAG
TGTCAAACGATTTTGATCGCTCTGCTACCACATTCATTCATCAAACAAGA
GCTACATGTAAACAACATAAAATAAACGTGTTTTTTGCACAAGAAACATG
TAAACACAGCACGCGACTatggctaccattttgaaccATACTAACAACGA
TGAAACTCGTCCAATGAGAGCGCGAGAAAAGACATGTTCGTTACGTAATC
AATTTACAAGATTTTTATAGGAATTATAATCTTataaaagttataaaaat
taTTGTGGTCTTGTAAATTTCAAAGTTAAATAATTTTGCGAACGTTttag
ctttttcaattttttttttttagtttatcTGATCCGATTTGCAAATCACC
AAAGACCTTTTGCATTTCCTTGATTTTTCACTTGCCATTCACgaaattct
aaaatttaaattttcttataaaaaatgtgttaaAACTGTGAAATAGGTTA
AGCAAGAT Run BLAST on NCBI transcript from alignment at sc0000081:688929..696420- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00008057 ID=TCONS_00008057|Name=TCONS_00008057|organism=Clytia hemisphaerica|type=transcript|length=7492bp|location=Sequence derived from alignment at sc0000081:688929..696420- (Clytia hemisphaerica)
CAGCGATTGAATCCAATGCTTTATTGGAAATAAACAACAATCGATCAGAT
TTCAAGTTGTTCAAGTAAAGGAAAACATGCAGAAAAACCTGATGGTAAGT
CACAAGAGGTACATAAGGTTTGCAATGAAAATTTAATTGTGTATGGTGCA
CTTAAATTTTGATACTGAAGTGTTGTATTTACCACCATTACTAATAATGA
GATAGTTTATGAGGCTCTAGAGCCTGGGAAATACAGTTGCCTTTATATGT
TTCTCTAGTATATACAGTAAAATACCTAACTGGACACTGCCAGAAATCAT
TCAAAAATGTTGATTTAACTTAAGGCATATAACTTTAAAATTTTAAATTT
TGCAATTAAGACTTCTTTGCGTTGCATTTGCTCTGACAAAGAGATTTTAA
TGAGATTCAGCTTTCCCATTTCAAATGTTAACCAAAAGTTAAAAAAGGTC
ATTTTGGTTCATCAATTTTACAGGATCAATGAAATACCAGATACATAAAA
CTTTTTGCTATAGGTCAGCCTGCCCAGCAAATAAAGGAATACCCTAAAGG
AAGAAATTTTGGCAGAAATTTAATTTGGCGAATGGTGGGAAAAGTTTTTT
CTGGGAAAATTTAATTTGGTGGATGGCTCTAATAATTAAACTTAGTTGGT
GAAAGTTATTTAGGCCAAACAAACTCTATTAAATAAGCAAAAAAAACTGA
AAATACCAAAATTTCTTCCTTTAAGGTTAATAAGTGATTAAATTTTGGAA
AAATAAAATGAGAATATTCTTACCTGAGGATGATAGAGAAAGGCAGGCAT
TGTTTGTCTCTGATACCTGTAAGGAAACAGAAAGATGAAATTCAAATCCT
GCAAGTTGGAACAAATTCTTGTGCGGAACAACCATTACAAATTTCTAACG
CTATCTGCCTGCTGACTTTATATGCTAGGATTGCTATGTCTGAGATGTAT
GTCATCCGTCTGAAGTACAGATTCTTTAAGTGGTGTCACATTCGCAGGAA
NTAGGATTGCTATGTCTGAGATGTATGTCATCCGTCTGAAGTACAGATTC
TTAAGTGGTGTCACATTCGCAGGAAAACAAACAAAACCATTAACTTGCTG
TCAATAAACCGTCAAAACAAATTCAAAAATTTTAAAGTGTTCCTTGAACA
AAATCTCAACAAGTTTGAATTTATATGTTGTCTAGCACTTTGAGTTTTCA
CGGAGCCAGAGGCGGGCGGGGCACTTTATGCTGTTGGCAGTTGCTTAACG
AGGTGGTTAATTCCAAAAATATTTATTTCATTATCAGAGTGAATGACCTG
ATGATCAAAATGTATTGCCTTTACAATAGTATCGCTGATCGAAGGAAGGA
CGAAAGATATGCAAACCCAAAACTTACATAGTATAAGAGGTATGGTTTTT
TTCTCCATTCCTCCTCATGGTTTCCTTGATGCATTCTTTATCTCTGATCG
CTCGGTGATTCTTCGCAAGGGACATAGTTCAAACATTTCATTCCTCTTAT
TAGTTTTTTTTTTCAATTTTTATGTGTTTTGATTTTAATTCTGTTCAGGG
AAATTTCGAATTGAAAATATTTTACTGAAATAATTGTTCAATGCATATTT
TTTGAACAAAATATCAAAAAGAAATGTTCTCTCTTAAAAACTCAGAACCA
TTTTCACTCAAAAATATAGCGTTCAAAGTAAGTATACAATGTGCAATTTG
AAGGTTAGATTACAGGTTACAAGACAAAACCAACTTAATTTATAGTTCTA
CGGACCCGACCGACCCTGTTTTTTATCCAAAATTGAAAAAATAATAGTAT
TGAATTTGCAATGCTGGAGGATTGACTTCAGTTTTTTGCAGATATTCGTA
ACTGAACAAGTTGAAAAAGTGTAAATTCTTCCTAAAACGTTAATGAATTT
AAAATATCCTGGAATGGAAATGGCACAAAAGTTGCTCATCTATAAAGTGG
AAAAAGTCTACTTTATTTTCATCATAATGACCGACTGACCCATTTTTTTT
TAGAGGTCTTCCCGTAGAACAATAAATTAAATTTGTCTCGCCTAATCAAA
GAATAACCTTAGAAACCAGGGTAGAAATATAAGCTAGATATACAAAATTT
GTTTATTTATGTAGCAGCATTAAAAAAAAGTTGTAATACAACACTAAAAT
AACCTTGATTGTGCAGAGAATCAAATTACCCATGTTGTTTTGGCAAACTT
CTACTTGAAAAAAAAACCTGGAAATTATGTTTACTCTAATAGCAGCGACA
GAGTCCTGTATTAACCAAACCGATAATCATGTGAGAACGTACCAAGAAAA
ACAAAAACAACTACTTGACGCAAAATGACAAACACAGTTCCTGTACTCTA
CATGTTTACATTTTTGCATTTCAGAGATTTAGACATAATACAAATACAAG
TCAAGTCTGTAAGAATATTCAAAAATAAATTCTGACCAGGAAGTAAGTGT
CACAGGGATAGTGATTAAAATTTTCATAGCCACAGTCTAGACAAGCCTGA
ATTTCCTGAAGATATCTTAAAGCCAAAAATTGCCATACACTGGTTTATCA
TACATAGTATTAAAGGCAAAATCATTAAATTTATTGAAAAAGTATTGAAT
GGTTCAAATTAAAAAAAAAGTTGATATATAATTATCAAATCTATTGTTAT
GGTTATTTTTGCCATTTAAAACGATTATTATCAAAAACTCACAAACAATT
TGTATCAAAGAATGGACAAGATCATCAGAAACAGTATAAGAACAATATCA
AAACATTTTTCATAAAAAAGAAGAAAATTACAATAATTAAGCAGCAACAT
CAACATTCTGTTGCAGAATCAACAGTATATAATAACCACATATTACGAGG
CATGCTGATATATAAAACCAAGCAATTGGTATACTTTCTCTTTCTGTTAT
TATTTGACCCTTGACCTTCATATTCATTTAGTGACGATTTTACAGTTAAT
TATAGTATGGAAATCACAACAATCATTTTTTCAGACAAAACTAGGAAGAA
ATTGTATTTTGCGAAGAGTATATTGTAGTAAATTTTGCAGTGTTATTGTC
TATTGTGTGGGAATACTGAAAAAGGAATTTTTTCATAAGTAAATAAACTA
CATGCAATTTTGGGAGAGATACCGCTAAGACGTTCTCCTAAATTTTTCGC
ATTTGCAAGAATAATTATAGCCTGTTTATCAAACACTGTATTTTTCAAAG
TATTCAGTTGGCCATTGAGTTTAAAGTCTCGAGCAAGAAAAAAGTGAAAC
CTTTAGATTTGTACCACAGTGCTTTCTGGATATCCCGACTGTAAATTATT
TTTTTAAATTGTGATATTGTTTACTTATGGTTTACTTTCTGCTTTATCAC
TTTTTGATAAATAACGAGATTGCTCACGGGAATTTTTTGACCCGCATTCT
GCGCGATCATGTTTAATCGCCCGCGCGTGTACGCTCTGTGAATTCTGTCT
GCTGTATATGGGTACTGTATAGAAGAAAAAGCTCCTCTCTTCAGTCTTTT
GAGAATTTAAGGAGATTGGAGAGTGTCCTAACCCCACAGACGGAAATTCT
AATTTTAAAGGCACTAGCAGGGTTTACAACCCGTTTGCTGCAGTCCCAAT
AAAGACTAAAGATCCTGAAAATATCGATGAGTGATCGGCTCCCGTATGTT
GGAAATGATCTAAGATCATTTTTCTAAGAAGTTAATACCTTGACAGGGTA
AATAAAATTATACAGGTCATGGCAAATAAAATTATGTTATATTTAATCAT
TGTTATTTTCCCCGATTAACATCTTGAGTGACAGAGTGGATAGGGCGCTG
AGCTGTCGTGCATGTTATCGTCAATTTTGAGAGTTCAAATCATATACGGT
GCGTTGAAGTTTGTGTTATTTTGTCAACATTGACCAACCTTTTTCTGGTT
TTATGAGCTGTTATTGTGTATTGATATTTTTGAAAATTGCCGTTATATTT
TTAAGAAACAAAAATTTTATAAGACGTGTCACCTCAGTGCAGTTTGACTC
AAAGTACAGTATTTCAAAATGGATCAGGTTGGTTAGCGGGTGGAGAGTCA
AGAGTCAACACTCATGACTTTCCTTTCTCTTGAAAATCCAGTATTCCAAA
ACTTTTAACTAAAAAAATGCATAAAAATCAACTTTTGTCTTTTTTTATTA
TCTTACAAACACTTTTTTCGAAACCACAAGTGAAAAGAAAAGCATCTAAA
AATGATTGACAGGTTTAAGAAATGATTGACAGGTGCGGGTTTGCTCGCGC
GGGTTAGAGATTCCCGTGAGCAATCTCGTTATTTATCAGCATGTGCTTTA
TCTTATGATACATTGTGTGTTTTTATGGTCACTGTATCTAAAATGTTTGC
ACCTAATTTTAGGCTCGTTATTTTAGAAAATTGGGTAGAAACTTATAGTT
CTTTTTAAAAATCACCTTCCTCTATTCAGCCACTACTTTAAGGGAACTAA
TTTTTGCAGTCAAAAAAAAAATTGGAAAAATTGCATTTCATTGAAATTAA
TTTTTGCCGTNGCAGTCAAAAAAAAAATGGAAAAATTGCATTTCATTGAA
ACTAATTTTTGCCACTTTGACCTATTTTGGACCTATTATTCTTTCATTTT
CCTAGGGATGGCTAAATTTGTATTTTGCAGGTTATTTCTGCGGTTTTGCC
AAAAAAAAATATGAAAAAAGTGAAAATTAGTTGCCTTAAGGTGATTAGTG
AATTCTCTTCCTCCCATGACAAATGTGTTTTCTAATTGTGACTAAAGAAC
AAATTCATTTTAGACAAAACTCCCAACCATTCTGAAGGTTGTTGTATAAG
AAGAAAGAAAAAGGAAGGATAAGCGTTGATTTTTATAGAAATTTCAAGGA
AAGGAAATTAAATTTTATTTATGAGTGTCAACTTGCTTGTGTGGAAAATC
ATAAAAATCCATGAATCTGAAACATTTTCCTAGCAAATCTACAAAAACAG
AAATTTTAGAAAAAAACAAAAAATTACCTCCAATTGCAAAGTTCTGAAAT
TTCTGAGCTTGGTACAGGTAGATCACTCTGATACGGAATGTAACTGAAAA
AGTTGCAACATTTGGCGAATTTAAGTTTCGCGAAATTTCACATATAGAAC
TTTCGTAAACTCATATAAAATTTACCTTTTTTGGTAACGAAAAACTCATT
AATCACACAAAAATTTAGCAAACAGTGCAAGACTGAGTAGGAAAGTTCAT
TTTTTGAAGAAAAAAAAACTTTTGCGTTTTTCAGGTTTAATTTCTTACCT
GGCAGAAACTTTCGCGAAAAAGGATAAAAATTGCGAAAAATGCGAAAGTT
TCTGCCTGTGAAAGTTTCTGCCTGCGAAAGTAATCAACCTATCATAAGGC
TAAAAAGCACATCAAAACATCAGTCACATGTATGAATGAACTATCCCAGA
TAACTGCCAGTTATTTTTGAGTGTCTTGTGTTTTCATTTTCCTTTTCTTT
AGCTAAATTGAAAGTAGATTTGCTGAGTCATGATTTTCCATAAATTACAT
GTACGCATAAAAAATTATCAAAATTTGCACTAAGCTTTGGTTAGTGATAT
ACATCGAATTCAAACCAATCAGACTGAAACTGCATTGTGGGGAAAAATCT
CCTTGTAGGTTAGCTACCTGTACCAAGTGTTAAACCAGCAGCAAAAATAT
TATGAACTAGACCATGAACAAACTTTAACACTTATTAGTCAAAAATTGGA
CTTGCAGTCATATTTTGCTAAATGCATCTTTGCACAAAAAAATCAGAACA
AAACTCAAAATGGAATCTTGAAAAAATGTGAAAAAACTGGTTTTTCTGGC
ATTTTTAGCGGGGAAATTTTTTTTTAGAAAAATTAGAATCCTGCCACACT
TTATACAAGGAAGTCAACCACAAAGTTATTCCATAAAATGTAAAATACAA
TTTTTACTGACAATCTTTAAAAATCCATAGGAAAATTTTGGCAAACGTCA
TTGTCAAACAAAATTGCCAAATCACTTCTCAACAAGATTATTGATACCAT
CTTTCACACAGAAAAGTCTACGTTATTGAGAAAAAATTTGGCAAAAAAGA
TTTGCTGTTAAAAACCACTAAATTCTAAATTTCTTCATTGGGACTAAATA
AACCTTTTCGTAATTGCAATATATATCATGTTGAATAATTGAAAACTCCT
ATGCAGGCCTACTCATTTAAGCAATAACACATTGATGCATAATAAGTATA
TTCGTCTCTACTGGTTTTGTCTTTTCCATCGTTTTGATGCTGGAGTCAGC
TTGAATTTCAATATTATTCAACATGACATTGTTGCACATTGGCTGATGAA
ATATGCTTAAAATGTTGATTAATCTTTTGAAAGTACCTTCAGATATTTTC
TTAAAAAGCCTTAAAAATAATTTTACTTCAATTGGCACTAACTTTGCCAA
AGACATGCATCACCCTTGCAAAATTTTAAGAATTTCTTCCCCTCCAAAAT
CCCGTCCCATTATTAAGAGATTGGAGAATTGAAATTTTTTTACAGCATTT
AGCAGCTCTAGGCCAAAGTGGCAAAGTTTCACTTTTTAGGATTGAGATTC
CACAAGCACATTGGCGGTGTTATGTTGTCAGTCTTAAGTCTTGTATACAG
TAGTAAACTAAGAAATATTAGATTGAAAATCAAGAATACAAGTTTGACAA
AAAAGATTAATTCAAAACAATTAAAATCTCATTTCTGTTATTATACAAAG
CAGGTTTTTAATTCTTAGAATTTTACAGTATTTTCAAACGTTTACCATTA
ATACATATGTTGATTTTTCTTCATTTTCAGGTACTCAGCAAGATTTACTG
TTTATATTCCACATCCCAACGCTTGAAGAGAAGAATGAGACATTGAGAAA
TTTCTTCGTTTTTTAAATGTTCAGGATAAAGAAGGAGGAGTAGAAATAGA
AACGAAATGAAAACTCTGCACCCCAGGAAATCACACACAGCAGAACATCT
AAAAACATGTAAATAATATAAACCCTTTCTTATACAAATTTACAAGCTTG
AATAACACCAGAAAATTCGAATTCCAAGCAGTAGTGTCAAACGATTTTGA
TCGCTCTGCTACCACATTCATTCATCAAACAAGAGCTACATGTAAACAAC
ATAAAATAAACGTGTTTTTTGCACAAGAAACATGTAAACACAGCACGCGA
CTATGGCTACCATTTTGAACCATACTAACAACGATGAAACTCGTCCAATG
AGAGCGCGAGAAAAGACATGTTCGTTACGTAATCAATTTACAAGATTTTT
ATAGGAATTATAATCTTATAAAAGTTATAAAAATTATTGTGGTCTTGTAA
ATTTCAAAGTTAAATAATTTTGCGAACGTTTTAGCTTTTTCAATTTTTTT
TTTTTAGTTTATCTGATCCGATTTGCAAATCACCAAAGACCTTTTGCATT
TCCTTGATTTTTCACTTGCCATTCACGAAATTCTAAAATTTAAATTTTCT
TATAAAAAATGTGTTAAAACTGTGAAATAGGTTAAGCAAGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00008057-exon-sc0000081-1575043694:696327..696420 | TCONS_00008057-exon-sc0000081-1575043694:696327..696420 | Clytia hemisphaerica | exon |
| TCONS_00008057-exon-sc0000081-1575043694:695032..695133 | TCONS_00008057-exon-sc0000081-1575043694:695032..695133 | Clytia hemisphaerica | exon |
| TCONS_00008057-exon-sc0000081-1575043694:688929..689640 | TCONS_00008057-exon-sc0000081-1575043694:688929..689640 | Clytia hemisphaerica | exon |
| TCONS_00008057-exon-sc0000081-1510915933:696327..696420 | TCONS_00008057-exon-sc0000081-1510915933:696327..696420 | Clytia hemisphaerica | exon |
| TCONS_00008057-exon-sc0000081-1510915933:695032..695133 | TCONS_00008057-exon-sc0000081-1510915933:695032..695133 | Clytia hemisphaerica | exon |
| TCONS_00008057-exon-sc0000081-1510915933:688929..689640 | TCONS_00008057-exon-sc0000081-1510915933:688929..689640 | Clytia hemisphaerica | exon |
| TCONS_00008057-exon-sc0000081-1491911889:696327..696420 | TCONS_00008057-exon-sc0000081-1491911889:696327..696420 | Clytia hemisphaerica | exon |
| TCONS_00008057-exon-sc0000081-1491911889:695032..695133 | TCONS_00008057-exon-sc0000081-1491911889:695032..695133 | Clytia hemisphaerica | exon |
| TCONS_00008057-exon-sc0000081-1491911889:688929..689640 | TCONS_00008057-exon-sc0000081-1491911889:688929..689640 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000081 | supercontig | sc0000081:688929..696420 - |
Blast
The following BLAST results are available for this feature:
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