TCONS_00007860 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007860
Unique NameTCONS_00007860
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1680

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007860 ID=TCONS_00007860|Name=TCONS_00007860|organism=Clytia hemisphaerica|type=transcript|length=1680bp
GTTATTTCGTCATCCTTCTGcgatgacaaagaaaaaaagtgctCTCTATA
CAAAAGCTTGTTAGATTGAAATTGTAAAAGATTGAAATTGGTTGTTAGCC
TTTGcaagttcaatattttttactCTTTGAAAGATTTGTATGGTTGATAA
TTTTCTACCGGACGATTGatagatatttttttctttcgacTTTTTTCTGA
GGAGTTTATCCAGCAGCCGTTGATTCAATCACTCTACAACACGAACTTGA
AGAAGAAgattataaaaagaagaaaagacttTTCATTCCTTGGAGCAAAC
GAGCTTCTTTCATAGCAGCTACTTATATAGAGAATCCTGAAACACTCACT
CAACCACCTGTAGTTACGACTTTCCAACGTCGAAAACAAGGACGTTTCGC
ATCTTTTCGTCGTACACGATCAACAATCACAACTGAAACGACCACACAAA
GTGTTTCTTCGACCAGAAAGTTCAATTTACGGCGCATGAATAGTTTAGAT
CGTAATACGATACGATCGTTTCGAAGCAGCGCGTCCACTTTACGGAGACA
AAACAGTGAGAATAACGCTACTTGGAAAAAGAAGAGAATGAGCTCGGTTT
CTTCGCTACAAAAACAACAGAGCTTTGATGCTGGCTCCTTAAACCATCGG
GATGCACGAGCTCTTAAACAACGAAAAAGTAATCGCTATAAAGTGGACGG
TGCTCAAAGTTTCTTTGATAGATACCAAGATACTTTACGAGTTGATATGT
TCTCCGTTGACTTGAATAAACTGACGATAAAAAGCAATAAAAGTGACGGT
TCATCGACCACAAAATCCGTCACCCCTACGACCCCTCTCACACCGAACTC
TACCGACGATAAAGACTCGGTTTTCGATTACAGCGACGAACATTTATCGA
AAGAATTTGATTACAAACTTGTCGGTAAAACGTACCAACAACTATTTTAC
ATTCGTTCAAGGCTTTCAGCGAGTGCGCGTAAAAGTGAATTTATGTGTGA
TGGTTCGTTTGGATGTTCTGCTTGTGATCTGCAATGTTACCCTGAATGGA
CGAATTCGTAAAAACTTGAACAAGAGAAAGTGGTAGAATGAGATAATGTT
ATGACTTGTGGATCGCCTTTGGTGAGATAAAACGGTGGCCTGATccaaaa
actgtttttctttacgGCAAGTGACTATACTTGAAACTAATGAGCGTGAG
AAACGAAAGTACAATCCAGTCTATAAGATCTTGTTTGTTTAGAAGGTTAC
CAAGGGGTCAATGAACGTTCTcagtgaaaatgtttttgatctCTCTACTT
GATCCTAAATGAGGAAGGAAATCAATTTATGGAATTAAAGAGAAAAGTTG
AACATAAATTTCTGATGGACTGTCAAGGAAGTCATTTTCTGTCAGCCATG
TAAGTTGTCACAATGAATGTACGAGTTTTGCTGTGAATCTTTATTTTGAG
ATGTTTCGATCTCAACTGTCAAGTTACCATCAATATGAACCTTTGCTAAC
TAATTCATAAAAGAATTCGCCATTTTAGAAGGATTTCGATTTTTGTCCGA
AATATTATTTATATCGTCCAATGTCTAACAATAtttgtaaatatattttt
cgCAGCAATATTTTTCCTTTGTAGTTATTTTCTATTGTACATAAATacgg
aaaataaattttgaaaatttgacaaactaa
Run BLAST on NCBI

transcript from alignment at sc0000080:634758..640196+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007860 ID=TCONS_00007860|Name=TCONS_00007860|organism=Clytia hemisphaerica|type=transcript|length=5439bp|location=Sequence derived from alignment at sc0000080:634758..640196+ (Clytia hemisphaerica)
GTTATTTCGTCATCCTTCTGcgatgacaaagaaaaaaagtgctCTCTATA
CAAAAGCTTGTTAGATTGAAATTGTAAAAGATTGAAATTGGTTGTTAGCC
TTTGcaagttcaatattttttactCTTTGAAAGATTTGTATGGTTGATAA
TTTTCTACCGGACGATTGatagatatttttttctttcgacTTTTTTCTGA
GGTAAGATATCACTTTCCGTCTTATCTTGTTCAGAAagcctcaaaatttt
cttctttttttgcagATCTTTTAATCCATGACAGGTCTGCTACAGATGAA
TTTACATTTTTGTTGGAGTTGTTTGGCATTAAGCTTACCAGTAACCGACC
TTGCGGTTTACAAACTTTTTACTTCTTTCTGTAGAAAAGAAAATGTGTTT
TTATGTGACATGCTTTTGAAGTTATGAGATCATTGGCATAATACGCTTGT
TGATGCAACACTTCCTTATATGACTCTCGTTATTTGGATATTTTATCAAC
CTTGTAGCCTTCCTGGGCTTCATTGTGAAAATCCTCTTATGTCTAGTAAG
CTGTAAGTTAAGTAATATCTCGTATGAATAACACCTGATTTGTGTCTTTC
GGCAAAACTTTGTCAATGTCCTCTCGAACATGTCGTTAGTTTTTGTCTTG
GTCTTTTACAATATATTGAATTTCGATAATCCTTTCCAGTCATTCATTAG
TCATCCATCTCAAGATGTGTGTCCAAGCTCTCTTTAtatctcttttatat
ttttctctttttacatttaaaagttttaatggAAACATCTCTGTATATTG
TCTCCATAATTTGAATGTCAAGCAGATCAATAAtctttcgaattacagag
aattTGAGTTATAGAGAGGCAAATTATCctggttcgagttatagagaggc
GAATTATCCTGGCTCGAGTTATAGAGAGGCGAATTATCctggttcgagtt
atagagactctacTATACTTCCATTGTTTAACTTATTCTGTATCAAAAAT
AGGAAATATTTCTGAGGGAAAAGCTTTTGCACCGACAGGACTTGACGTAT
AACAGTCTGTCcagtcaaaaatttttgatgaggaAATGAGTTTTAAGCGG
TCTTTCTTGGACAAACTACTCTTCCTTTTATAGATTCCTGGTTCAGTAAT
TAATTTCGATCAGATTTTCTAAACTATATTTATACTTTTGCTTGCTATCA
CTTCAGGGggcttttttaaagattttggcATCAACAGCGTTGAAATATTT
CGATTTCCATCGCATTTTCTACAAACTTCTTGCCAACCGCACCAATTGGC
TGATGAGGAAATTGAAAGATTCTAATGACTCTCGTTTAGATGGGACCACC
CTTTCACCTCTAAAACGAGAAGAATTTCTCAACAATTGACAAGATATATA
AGTCAGTTTTGGATTTAATTTGTTAATGATGTTATTGGGTGGTTACCAGA
CCTCCTATTGATATGAttgttttcgaaagtttttCATCGATTAATTTTgg
aatgaagaaaaaataacagaTTTTGGCAATCTAGAAATTTTACTCGAATC
TTCAACACATAATGCTTTGTGATTTCTAAATGCTAAATTCAAAATTGTCA
TcgaatttcattttgaaatttgaatcttCACATAGACTTTTGCAAGAGTT
CTGCCTTCAGGCAAATCAATCTATAGTATCTGAGAACTTTTTAAGGGTCA
AATTTCAGTCTGTTTGAAACATTAAACATTAAGAAGGGGCTTTTTGGAGT
ATCGTTTCGTCATATCATCGATAACTTGAACATTTGTCTGCTGACGTTTG
CAGTGTGATTGATAAGTGATTCTTAAAGCGATTATTGTCATCACATTTTT
TTACTGATTTATGATTTCGCATGTGTTTCTTTAGAGTGGTCATGAGAAAT
CTTGTTTATGTCCTTTCAGCAAATCTTGTTATTGCTACAAGTCGTGCTGT
TGGTGTATTTTCCCTTATAATAGTCTACTTGTCAAGACAGAAGGGTCTGG
AATAAATATCGTTTACTCATATGGCCTGGTTGTTACGCGGGAAGGGTCCT
GTTGCTTCAAACACGCTGAGAAGGCATGAACGTCGTTTGGCAAAAGAGAC
TTGAATAGAATCTTGGatataattttttctagccaGCGAACGTGACTGTC
ATGAGGTCATCTTTTTATTGTGTTATTCTTAAGTTTGATGTATTTTCATG
TGTGGAAAAAAATAATCTCAGTTGACGAGGGATGTACATTTTGCCAAAAA
GATTCATGTCATGAAAGATATTGTTTGTCGCTTGAAGTCTTCTTAGAGAG
AAATTGTTATTGTTGAACACCTCACTCTACAAAGCCTCTTGTTTGTCACC
TCTTGCACTGGTCTGTGGGACAAAGTCCTtctcaaccaatcagaattgAG
CATTTGACTTCTCTCATCAAATGAGTTGTTCCACTTGATACAATTTCTCA
AATGACGTCATCTCCGCTTCTCTCAGCGCTACTTATTATATAGATGGCAG
GACGAGCTTTTTGTTCATAAAATCATATTAAATTTGATATCACTTTGATA
AGCTTATAGACGAGCCAGGAGCTGTTTTATGTCATTTCTTTTCTTTGCTT
CAAATAATAAGGTAAATGATATGTTCTCGGTGGTCAAGTCATGAGAATTT
CTCGGTTTGGATGATGAGTTTTGTAAGTTGCGTAAAGGTGTCGTAACTGA
TAGTAAAAGTTCAAGCCAAAAAAGGGTTTTTACCTTTGAGGAAAACGAGT
TGAACAAGTTTGTGCTTTTATGATAATTAGTTATGATAAGCATGGCGTAA
CTGCTtgatattgttttgttttgagaacGTCAACTTTTGCATTGATGTCA
TTTAAATAGTGCATTGTATAACGACCACTAATTATTTTCCTCTATCGCCT
TGTGTTTATAACTTTCACTGTTTGTTTTTATAGGAGTTTATCCAGCAGCC
GTTGATTCAATCACTCTACAACACGAACTTGAAGAAGAAgattataaaaa
gaagaaaagacttTTCATTCCTTGGAGCAAACGAGCTTCTTTCATAGCAG
CTACTTATATAGAGAATCCTGAAACACTCACTCAACCACCTGTAGTTACG
ACTTTCCAACGTCGAAAACAAGGACGTTTCGCATCTTTTCGTCGTACACG
ATCAACAATCACAACTGAAACGACCACACAAAGTGTTTCTTCGACCAGAA
AGTTCAATTTACGGCGCATGAATAGTTTAGATCGTAATACGATACGATCG
TTTCGAAGCAGCGCGTCCACTTTACGGAGACAAAACAGTGAGAATAACGC
TACTTGGAAAAAGAAGAGAATGAGCTCGGTTTCTTCGCTACAAAAACAAC
AGAGCTTTGATGCTGGCTCCTTAAACCATCGGGATGCACGAGCTCTTAAA
CAACGAAAAAGTAATCGCTATAAAGTGGACGGTGCTCAAAGTTTCTTTGA
TAGATACCAAGATACTTTACGAGTTGATATGTTCTCCGTTGACTTGAATA
AACTGACGATAAAAAGCAATAAAAGNGGACGAGCTTTTTGTTCATAAAAT
CATATTAAATTTGATATCACTTTGATAAGCTTATAGACGAGCCAGGAGCT
GTTTTATGTCATTTCTTTTCTTTGCTTCAAATAATAAGGTAAATGATATG
TTCTCGGTGGTCAAGTCATGAGAATTTCTCGGTTTGGATGATGAGTTTTG
TAAGTTGCGTAAAGGTGTCGTAACTGATAGTAAAAGTTCAAGCCAAAAAA
GGGTTTTTACCTTTGAGGAAAACGAGTTGAACAAGTTTGTGCTTTTATGA
TAATTAGTTATGATAAGCATGGCGTAACTGCTtgatattgttttgttttg
agaacGTCAACTTTTGCATTGATGTCATTTAAATAGTGCATTGTATAACG
ACCACTAATTATTTTCCTCTATCGCCTTGTGTTTATAACTTTCACTGTTT
GTTTTTATAGGAGTTTATCCAGCAGCCGTTGATTCAATCACTCTACAACA
CGAACTTGAAGAAGAAgattataaaaagaagaaaagacttTTCATTCCTT
GGAGCAAACGAGCTTCTTTCATAGCAGCTACTTATATAGAGAATCCTGAA
ACACTCACTCAACCACCTGTAGTTACGACTTTCCAACGTCGAAAACAAGG
ACGTTTCGCATCTTTTCGTCGTACACGATCAACAATCACAACTGAAACGA
CCACACAAAGTGTTTCTTCGACCAGAAAGTTCAATTTACGGCGCATGAAT
AGTTTAGATCGTAATACGATACGATCGTTTCGAAGCAGCGCGTCCACTTT
ACGGAGACAAAACAGTGAGAATAACGCTACTTGGAAAAAGAAGAGAATGA
GCTCGGTTTCTTCGCTACAAAAACAACAGAGCTTTGATGCTGGCTCCTTA
AACCATCGGGATGCACGAGCTCTTAAACAACGAAAAAGTAATCGCTATAA
AGTGGACGGTGCTCAAAGTTTCTTTGATAGATACCAAGATACTTTACGAG
TTGATATGTTCTCCGTTGACTTGAATAAACTGACGATAAAAAGCAATAAA
AGTGACGGTTCATCGACCACAAAATCCGTCACCCCTACGACCCCTCTCAC
ACCGAACTCTACCGACGATAAAGACTCGGTTTTCGATTACAGCGACGAAC
ATTTATCGAAAGAATTTGATTACAAACTTGTCGGTAAAACGTACCAACAA
CTATTTTACATTCGTTCAAGGCTTTCAGCGAGTGCGCGTAAAAGTGAATT
TATGTGTGATGGTTCGTTTGGATGTTCTGCTTGTGATCTGCAATGTTACC
CTGAATGGACGAATTCGTAAAAACTTGAACAAGAGAAAGTGGTAGAATGA
GATAATGTTATGACTTGTGGATCGCCTTTGGTGAGATAAAACGGTGGCCT
GATccaaaaactgtttttctttacgGCAAGTGACTATACTTGAAACTAAT
GAGCGTGAGAAACGAAAGTACAATCCAGTCTATAAGATCTTGTTTGTTTA
GAAGGTTACCAAGGGGTCAATGAACGTTCTcagtgaaaatgtttttgatc
tCTCTACTTGATCCTAAATGAGGAAGGAAATCAATTTATGGAATTAAAGA
GAAAAGTTGAACATAAATTTCTGATGGACTGTCAAGGAAGTCATTTTCTG
TCAGCCATGTAAGTTGTCACAATGAATGTACGAGTTTTGCTGTGAATCTT
TATTTTGAGATGTTTCGATCTCAACTGTCAAGTTACCATCAATATGAACC
TTTGCTAACTAATTCATAAAAGAATTCGCCATTTTAGAAGGATTTCGATT
TTTGTCCGAAATATTATTTATATCGTCCAATGTCTAACAATAtttgtaaa
tatatttttcgCAGCAATATTTTTCCTTTGTAGTTATTTTCTATTGTACA
TAAATacggaaaataaattttgaaaatttgacaaactaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004452XLOC_004452Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007860-exon-sc0000080-1491911889:634758..634958TCONS_00007860-exon-sc0000080-1491911889:634758..634958Clytia hemisphaericaexon
TCONS_00007860-exon-sc0000080-1510915933:634758..634958TCONS_00007860-exon-sc0000080-1510915933:634758..634958Clytia hemisphaericaexon
TCONS_00007860-exon-sc0000080-1575043694:634758..634958TCONS_00007860-exon-sc0000080-1575043694:634758..634958Clytia hemisphaericaexon
TCONS_00007860-exon-sc0000080-1491911889:638718..640196TCONS_00007860-exon-sc0000080-1491911889:638718..640196Clytia hemisphaericaexon
TCONS_00007860-exon-sc0000080-1510915933:638718..640196TCONS_00007860-exon-sc0000080-1510915933:638718..640196Clytia hemisphaericaexon
TCONS_00007860-exon-sc0000080-1575043694:638718..640196TCONS_00007860-exon-sc0000080-1575043694:638718..640196Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000080supercontigsc0000080:634758..640196 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.820481	0.630848	0	0	1.73099	0.745953	0	0	6.46376	5.40504	0.919598	10.8592	0.283019	1.50873	0.807304	0.786673	2.4114	2.7579	0	1.87358	6.15309	6.56251	14.6644	13.1497	2.1646	0	11.4808	9.01897	17.3567	18.8863
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00007860 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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