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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007824 ID=TCONS_00007824|Name=TCONS_00007824|organism=Clytia hemisphaerica|type=transcript|length=3626bpRun BLAST on NCBI protein sequence of TCONS_00007824-protein >TCONS_00007824-protein ID=TCONS_00007824-protein|Name=TCONS_00007824-protein|organism=Clytia hemisphaerica|type=polypeptide|length=430bp MSQTEALEELSKEDLIKKCQDLLRTNNHLKAELKSCKQKLKLNSSVKSKARun BLAST on NCBI transcript from alignment at sc0000080:320483..341185+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00007824 ID=TCONS_00007824|Name=TCONS_00007824|organism=Clytia hemisphaerica|type=transcript|length=20703bp|location=Sequence derived from alignment at sc0000080:320483..341185+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000080:320483..341185+ >TCONS_00007824 ID=TCONS_00007824|Name=TCONS_00007824|organism=Clytia hemisphaerica|type=CDS|length=19395bp|location=Sequence derived from alignment at sc0000080:320483..341185+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00007824 vs. Swiss-Prot (Human)
Match: PUS3 (tRNA pseudouridine(38/39) synthase OS=Homo sapiens GN=PUS3 PE=1 SV=3) HSP 1 Score: 358.607 bits (919), Expect = 1.009e-110 Identity = 187/433 (43.19%), Postives = 270/433 (62.36%), Query Frame = 2
Query: 404 EDLIKKCQDLLRTNNHLKAELKSCKQKLKLNSSVKSKAKRMEPNQRPIDFSQYHKKRIALRILYHGWDYCGFASQENTENTVEEQIFIALIKGKLIEDRVSANYSRCGRTDKGVSAFGQVIALDVR-----GRKKEEFCVEPTKGILEPSDIPYVKALNRLLPLDIRVIAYADVTPDFDARFSCGGRTYKYFFPASNLDVEVMHEAAQRLLGEHDFRNFCKVDVGNNINHFMRNIVRFHVRRVQQTGS------PRDMCEMEITGRAFLWHQVRCMAAVLFLIGLHHEKPQVIDFLLDIEKCPKRPQYGIASEIPLILYDCTYENINWVYEKDFNDFNIQRLEEYWVEKSVQSIGLRTMIDYLHEKIPT-------------------DLLCPASCLLTGYAFREYQPLEERNVCGGLERHLEKQAVKRIKLE 1612
E L+K+ ++L + LK E + K K +S+++ + +R DFS + ++ +ALRI Y GW Y GFASQENT NT+EE++F AL K +L+E R ++NY RCGRTDKGVSAFGQVI+LD+R GR E+F V+ +I Y LNR+LP DIR++A+A V P F ARFSC RTY+YFFP ++LD+ M AAQ+ +G HDFRN CK+DV N + +F R I+ V+ V Q+ P +C+ E+TG+AFL+HQVRCM A+LFLIG EKP++ID LL+IEK P++PQY +A E PL+LYDC +EN+ W+Y+++ +FNI L++ W +V++ L +M+ L + +P ++ S + G R Y+PL +R C GLE ++ V+R ++E
Sbjct: 12 EKLLKRVRELEQEVQRLKKE----QAKNKEDSNIRENSAGAGKTKRAFDFSAHGRRHVALRIAYMGWGYQGFASQENTNNTIEEKLFEALTKTRLVESRQTSNYHRCGRTDKGVSAFGQVISLDLRSQFPRGRDSEDFNVKEEANAAA-EEIRYTHILNRVLPPDIRILAWAPVEPSFSARFSCLERTYRYFFPRADLDIVTMDYAAQKYVGTHDFRNLCKMDVANGVINFQRTILSAQVQLVGQSPGEGRWQEPFQLCQFEVTGQAFLYHQVRCMMAILFLIGQGMEKPEIIDELLNIEKNPQKPQYSMAVEFPLVLYDCKFENVKWIYDQEAQEFNITHLQQLWANHAVKTHMLYSMLQGL-DTVPVPCGIGPKMDGMTEWGNVKPSVIKQTSAFVEGVKMRTYKPLMDRPKCQGLESRIQ-HFVRRGRIE 437 The following BLAST results are available for this feature:
BLAST of TCONS_00007824 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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