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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007774 ID=TCONS_00007774|Name=TCONS_00007774|organism=Clytia hemisphaerica|type=transcript|length=1451bp
AGAAATATGTTACACTTATaagataaaatttaattttttattttagtttt
atattttgaaatatgatgATCATGGGTAAATGTCCATACAAGAATCTATT
CAaatttatgtttcatttttgtGTCATATCCTTCAAAGCAATAaccaata
tttcaatttttccatATACAGTTGACGCCCTCTAaatcgacgttctacta
ttcgataggctcccttattcgatgaaatttaaagtccccgtcaacaagaa
actctgataaacgacgctcccttattcaatgaaaatccgattccccttga
agatagaattagagagcgtcaactgtaatttaACAAACAAGACAAAGCTT
GTGACTGAAACCACTTAATATGGATGGTGttcatttgaatgtattttcaa
AGCCACATAACCTCCGATTGCTCTTCAAATCTTAAGATGTATTAAGGGGT
TGTTTATATGGAGGCGGGCTGCCCCAGCTAGGCGAGGTGGAATGGATTTT
CGAACGTTAAGTCACAGTTTTTGACAAATCGAATGGCTAAAAATAGATGA
CGTGACGTTCGAAAATCTATCCCACCTCACCTAGCCGTGCCAACCCGCCT
CCAATGAACAGCCATTCTTTCCCTTGCAGTTCTCTCTCCTCGGATTCATG
ATTTCAAGATGTGTTAGTCATGATTTTAGCCATACATAATAAGTCCGCCA
TTATCCTTTTCGctttctcttctcttcttctcTTGATCAAGGAAAGCGAC
TCTAGATTGGCCGCGCGTACGCATGGGTTTCAATAAGTATCGATAGTAGG
ATGCCATTAGACCGACGAACAACATTGACATCAGTGTTCCGATGattaaa
atacagaccagaataatGACAGTCGAGTTGACAATTTTTGTTGTGAAGAT
GTACGCGATGATGACAATGTTGACGAAAACATCAATCGCAGTCCATATGA
TGTATGGTAACAAGTAGTTTCTGTTTTCATAATTTACCTCAGGAAGTCGA
TTAAAACATTTGAGAATTAAAATTGAGGTAATGACACGTGCAATTTGTGA
CACGATAAAAAAGTTGTGAATTTGCTGACCGGAATGGTCTTGGAAATAAA
CGTCGATCTTTGCGTATAGGTGAATAAGGAGTAGAAGTGTGAGAGCATAA
AGCATGGAAAAAATGCTGACCAGAATCGTGCTAATTCTGTTATTGTTTAT
CATCTTGAACGAAATCGTGGTTTTCGGTGTATATGGTTTTGATTGAATTT
CGTGTCTCTACAAATAATAAATTTCTCTTGTCGGAGGTTACTTGCAATGa
acgatttttcaaaaaaatgtaaatttcttTCACTTTAGAAGGGTTCTTGG
TCTGAACCCcagcttttaaaatcttttgaatttCACTTTCTCAATGCCAA
TGAAAGTGACCTCAACGTTTTTATTTCCAGTTGTTTTCCTTATTGTATGT
T Run BLAST on NCBI protein sequence of TCONS_00007774-protein >TCONS_00007774-protein ID=TCONS_00007774-protein|Name=TCONS_00007774-protein|organism=Clytia hemisphaerica|type=polypeptide|length=175bp
MINNNRISTILVSIFSMLYALTLLLLIHLYAKIDVYFQDHSGQQIHNFFI
VSQIARVITSILILKCFNRLPEVNYENRNYLLPYIIWTAIDVFVNIVIIA
YIFTTKIVNSTVIILVCILIIGTLMSMLFVGLMASYYRYLLKPMRTRGQS
RVAFLDQEKKRRESEKDNGGLIMYG Run BLAST on NCBI transcript from alignment at sc0000079:618221..619671 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00007774 ID=TCONS_00007774|Name=TCONS_00007774|organism=Clytia hemisphaerica|type=transcript|length=1451bp|location=Sequence derived from alignment at sc0000079:618221..619671 (Clytia hemisphaerica)
AACATACAATAAGGAAAACAACTGGAAATAAAAACGTTGAGGTCACTTTC
ATTGGCATTGAGAAAGTGaaattcaaaagattttaaaagctgGGGTTCAG
ACCAAGAACCCTTCTAAAGTGAaagaaatttacatttttttgaaaaatcg
ttCATTGCAAGTAACCTCCGACAAGAGAAATTTATTATTTGTAGAGACAC
GAAATTCAATCAAAACCATATACACCGAAAACCACGATTTCGTTCAAGAT
GATAAACAATAACAGAATTAGCACGATTCTGGTCAGCATTTTTTCCATGC
TTTATGCTCTCACACTTCTACTCCTTATTCACCTATACGCAAAGATCGAC
GTTTATTTCCAAGACCATTCCGGTCAGCAAATTCACAACTTTTTTATCGT
GTCACAAATTGCACGTGTCATTACCTCAATTTTAATTCTCAAATGTTTTA
ATCGACTTCCTGAGGTAAATTATGAAAACAGAAACTACTTGTTACCATAC
ATCATATGGACTGCGATTGATGTTTTCGTCAACATTGTCATCATCGCGTA
CATCTTCACAACAAAAATTGTCAACTCGACTGTCattattctggtctgta
ttttaatCATCGGAACACTGATGTCAATGTTGTTCGTCGGTCTAATGGCA
TCCTACTATCGATACTTATTGAAACCCATGCGTACGCGCGGCCAATCTAG
AGTCGCTTTCCTTGATCAAgagaagaagagaagagaaagCGAAAAGGATA
ATGGCGGACTTATTATGTATGGCTAAAATCATGACTAACACATCTTGAAA
TCATGAATCCGAGGAGAGAGAACTGCAAGGGAAAGAATGGCTGTTCATTG
GAGGCGGGTTGGCACGGCTAGGTGAGGTGGGATAGATTTTCGAACGTCAC
GTCATCTATTTTTAGCCATTCGATTTGTCAAAAACTGTGACTTAACGTTC
GAAAATCCATTCCACCTCGCCTAGCTGGGGCAGCCCGCCTCCATATAAAC
AACCCCTTAATACATCTTAAGATTTGAAGAGCAATCGGAGGTTATGTGGC
TttgaaaatacattcaaatgaaCACCATCCATATTAAGTGGTTTCAGTCA
CAAGCTTTGTCTTGTTTGTtaaattacagttgacgctctctaattctatc
ttcaaggggaatcggattttcattgaataagggagcgtcgtttatcagag
tttcttgttgacggggactttaaatttcatcgaataagggagcctatcga
atagtagaacgtcgattTAGAGGGCGTCAACTGTATatggaaaaattgaa
atattggtTATTGCTTTGAAGGATATGACacaaaaatgaaacataaattT
GAATAGATTCTTGTATGGACATTTACCCATGATcatcatatttcaaaata
taaaactaaaataaaaaattaaattttatcttATAAGTGTAACATATTTC
T Coding sequence (CDS) from alignment at sc0000079:618221..619671 >TCONS_00007774 ID=TCONS_00007774|Name=TCONS_00007774|organism=Clytia hemisphaerica|type=CDS|length=528bp|location=Sequence derived from alignment at sc0000079:618221..619671 (Clytia hemisphaerica)
ATGATAAACAATAACAGAATTAGCACGATTCTGGTCAGCATTTTTTCCAT
GCTTTATGCTCTCACACTTCTACTCCTTATTCACCTATACGCAAAGATCG
ACGTTTATTTCCAAGACCATTCCGGTCAGCAAATTCACAACTTTTTTATC
GTGTCACAAATTGCACGTGTCATTACCTCAATTTTAATTCTCAAATGTTT
TAATCGACTTCCTGAGGTAAATTATGAAAACAGAAACTACTTGTTACCAT
ACATCATATGGACTGCGATTGATGTTTTCGTCAACATTGTCATCATCGCG
TACATCTTCACAACAAAAATTGTCAACTCGACTGTCattattctggtctg
tattttaatCATCGGAACACTGATGTCAATGTTGTTCGTCGGTCTAATGG
CATCCTACTATCGATACTTATTGAAACCCATGCGTACGCGCGGCCAATCT
AGAGTCGCTTTCCTTGATCAAgagaagaagagaagagaaagCGAAAAGGA
TAATGGCGGACTTATTATGTATGGCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00007774-exon-sc0000079-1491911889:618221..619671 | TCONS_00007774-exon-sc0000079-1491911889:618221..619671 | Clytia hemisphaerica | exon |
| TCONS_00007774-exon-sc0000079-1510915933:618221..619671 | TCONS_00007774-exon-sc0000079-1510915933:618221..619671 | Clytia hemisphaerica | exon |
| TCONS_00007774-exon-sc0000079-1575043694:618221..619671 | TCONS_00007774-exon-sc0000079-1575043694:618221..619671 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000079 | supercontig | sc0000079:618221..619671 . |
Blast
The following BLAST results are available for this feature:
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