TCONS_00007747 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007747
Unique NameTCONS_00007747
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length848

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007747 ID=TCONS_00007747|Name=TCONS_00007747|organism=Clytia hemisphaerica|type=transcript|length=848bp
CGGGCAAACACCTCACAGAGGTAAAATATCTGGTAAGATATAGCAGCTTT
GATAGAAAACAATTTCGCAGGGATCTAATTTAACGGTTGAGCTTTTCTGC
GAAAACATCATTCTCCGGATGAACcataatttgtaaaaattattttcact
aTTATATTGGTTTCTTATTTCAAATTCTTTATCTTTTATGTCAACATTTC
AATGcacgttctttttataagaacataaggcttcgatgaccaaaatatta
taaacattttaaggctttgcggactctaaaacagccgATTTATTAAGGGA
AATAGGCAAGAGTGCTCACAAATGgttaaaaaaagaatattttaagaata
tttttggcttaaaactataaattttggattttcataaaaagacgtgtata
GTGCCAATTTCATTCAACATTGGTATCTTGacaatttttggaatttgttc
aAAATTATTTGTGGGCTGAGGCCTTCTCAAATAACAAATGgaagtttaat
tttttgaaacacTTTAGGGTCATACTTGGTACTTGTGAGACCACGCCTAA
AGGATCCCTAATGATTTTCTTATAATTCTATATTGGTCGGTAAAATTAca
ataaattatttaaaaaatgcacTAAGATATTAAAGAGACTACAAAAACGT
ACAAAACACtaaaaaataaatgcaaaaaaaaatcctaactGTTGCGAAAA
ACGATACTTGTTATGTGAGTGTCAGAAAACGGTCACAGAAATCAGAGTCT
AAATTACGACAGAGTTTCCGTGTTAAGCTTTCACCCTTTGCCAAACAAAT
ATTTTACTCCTcacagaaaagaaaatttgatttcgaAAAGAATAACTG
Run BLAST on NCBI

transcript from alignment at sc0000079:71334..72181

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007747 ID=TCONS_00007747|Name=TCONS_00007747|organism=Clytia hemisphaerica|type=transcript|length=848bp|location=Sequence derived from alignment at sc0000079:71334..72181 (Clytia hemisphaerica)
CAGTTATTCTTTtcgaaatcaaattttcttttctgtgAGGAGTAAAATAT
TTGTTTGGCAAAGGGTGAAAGCTTAACACGGAAACTCTGTCGTAATTTAG
ACTCTGATTTCTGTGACCGTTTTCTGACACTCACATAACAAGTATCGTTT
TTCGCAACagttaggatttttttttgcatttattttttaGTGTTTTGTAC
GTTTTTGTAGTCTCTTTAATATCTTAgtgcattttttaaataatttattg
TAATTTTACCGACCAATATAGAATTATAAGAAAATCATTAGGGATCCTTT
AGGCGTGGTCTCACAAGTACCAAGTATGACCCTAAAgtgtttcaaaaaat
taaacttcCATTTGTTATTTGAGAAGGCCTCAGCCCACAAATAATTTtga
acaaattccaaaaattgtCAAGATACCAATGTTGAATGAAATTGGCACta
tacacgtctttttatgaaaatccaaaatttatagttttaagccaaaaata
ttcttaaaatattctttttttaacCATTTGTGAGCACTCTTGCCTATTTC
CCTTAATAAATcggctgttttagagtccgcaaagccttaaaatgtttata
atattttggtcatcgaagccttatgttcttataaaaagaacgtgCATTGA
AATGTTGACATAAAAGATAAAGAATTTGAAATAAGAAACCAATATAAtag
tgaaaataatttttacaaattatgGTTCATCCGGAGAATGATGTTTTCGC
AGAAAAGCTCAACCGTTAAATTAGATCCCTGCGAAATTGTTTTCTATCAA
AGCTGCTATATCTTACCAGATATTTTACCTCTGTGAGGTGTTTGCCCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004394XLOC_004394Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007747-exon-sc0000079-1491911889:71334..72181TCONS_00007747-exon-sc0000079-1491911889:71334..72181Clytia hemisphaericaexon
TCONS_00007747-exon-sc0000079-1510915933:71334..72181TCONS_00007747-exon-sc0000079-1510915933:71334..72181Clytia hemisphaericaexon
TCONS_00007747-exon-sc0000079-1575043694:71334..72181TCONS_00007747-exon-sc0000079-1575043694:71334..72181Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000079supercontigsc0000079:71334..72181 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.388645	0.162424	0.251454	0.123004	1.87182	0.946648	1.14209	1.47017	0.374602	0.811332	0.674999	0.481859	0.553876	0.383471	0.346792	0.473659	0.166717	0.256319	0.413138	0.494079	1.28833	1.41391	0.827567	0.926004	0.357661	0.425605	1.67486	2.20082	1.23548	0.941772
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00007747 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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