TCONS_00007744 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007744
Unique NameTCONS_00007744
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length421

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007744 ID=TCONS_00007744|Name=TCONS_00007744|organism=Clytia hemisphaerica|type=transcript|length=421bp
ACCTTATAACAATCGGCATGAGATGTTCCTTATGGTCGTCCTTGAACACC
GGTTCATCAACACTACAAATCTTGACCAATTCTTCTCGAAACGTTGTATC
ATCCATCAGTTTTTCAAAGTCCTCATGGTAGGGCTTCAAATAGGGGAATT
TGTAAGTTTGTAAGCACTGTAGAGTCTTCTGTTGGACGTCATGCTCTTTG
TGAGATAGAAACTCCATGTAGAATTGGAAAAGTCTCTTCTCTTTACTGAT
CGATTTAGGATCTTTGAATTGTTTGTAGACATCGAGTTGAGCGCAGAGTG
TTTTGGTTTTACGTTTGTTATGTTTCTTGATAGTTTCTTTATCACGTGGT
TCTTGATGGTTAATTACTTGTTTTTCTTTACTGACATTCTGCGTTCTGGA
ATATAGTTCATCAGCTTGCGT
Run BLAST on NCBI

transcript from alignment at sc0000079:639564..640048-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007744 ID=TCONS_00007744|Name=TCONS_00007744|organism=Clytia hemisphaerica|type=transcript|length=485bp|location=Sequence derived from alignment at sc0000079:639564..640048- (Clytia hemisphaerica)
ACCTTATAACAATCGGCATGAGATGTTCCTTATGGTCGTCCTTGAACACC
GGTTCATCAACACTACAAATCTTGACCAATTCTTCTCGAAACGTTGTATC
ATCCATCAGTTTTTCAAAGTCCTCATGGTAGGGCTTCAAATAGGGGAATT
TGTAAGTTTGTAAGCACTGTAGAGTCTTCTGTTGGACGTCATGCTCTTTG
TGAGATAGAAACTCCATGTAGAATTGGAAAAGTCTCTTCTCTTTACTGAT
CGATTTAGGATCTTTGAATTGTTTGTAGACATCGAGTTGAGCGCAGAGTG
TTTTGGTTTTACGTTTGTTATGTTTCTTGATAGTTTCTTTATCACGTGGT
TCTTGATGGTTAATTACTTGTTTTTCTTTACTGACATTCTGCGTNAGTTT
CCTTGTCACGTGGTTCTTGATGGTTAATTACTTGTTTTTCTTTACTGACA
TTCTGCGTTCTGGAATATAGTTCATCAGCTTGCGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004391XLOC_004391Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007744-exon-sc0000079-1575043694:639664..640048TCONS_00007744-exon-sc0000079-1575043694:639664..640048Clytia hemisphaericaexon
TCONS_00007744-exon-sc0000079-1575043694:639564..639599TCONS_00007744-exon-sc0000079-1575043694:639564..639599Clytia hemisphaericaexon
TCONS_00007744-exon-sc0000079-1510915933:639664..640048TCONS_00007744-exon-sc0000079-1510915933:639664..640048Clytia hemisphaericaexon
TCONS_00007744-exon-sc0000079-1510915933:639564..639599TCONS_00007744-exon-sc0000079-1510915933:639564..639599Clytia hemisphaericaexon
TCONS_00007744-exon-sc0000079-1491911889:639664..640048TCONS_00007744-exon-sc0000079-1491911889:639664..640048Clytia hemisphaericaexon
TCONS_00007744-exon-sc0000079-1491911889:639564..639599TCONS_00007744-exon-sc0000079-1491911889:639564..639599Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000079supercontigsc0000079:639564..640048 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	12.2339	7.3036	1.78896	2.5917	0.656464	0	0	1.9704	0	4.00196e-06	0	0	0	0	0	9.95486e-08	0	0	0	0	0.937501	7.24156	0.116458	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR011430DRIM
Blast
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BLAST of TCONS_00007744 vs. Swiss-Prot (Human)
Match: UTP20 (Small subunit processome component 20 homolog OS=Homo sapiens GN=UTP20 PE=1 SV=3)

HSP 1 Score: 77.7962 bits (190), Expect = 1.091e-16
Identity = 44/118 (37.29%), Postives = 76/118 (64.41%), Query Frame = -1 
Query:    2 PRDKETIKKHNKRKT-KTLCAQLDVYKQFKDPKSISKEKRLFQFYMEFLSHKEHDVQQKTLQCLQTYKFPYLKPYHEDFEKLMDDTTFREELVKI-CSVDEPVFKDDHKEHLMPIVIR 349
            P+D+ + KK  +R   K L A L V+ +F +P+++  E +L++ Y++ L H++  VQ+ TL C+ TYK P++ PY E+ ++L++D +F+EE+V    S D  V K  H+  L PI++R
Sbjct:  897 PQDESSQKKKTRRAAAKQLIAHLQVFSKFSNPRALYLESKLYELYLQLLLHQDQMVQKITLDCIMTYKHPHVLPYRENLQRLLEDRSFKEEIVHFSISEDNAVVKTAHRADLFPILMR 1014
The following BLAST results are available for this feature:
BLAST of TCONS_00007744 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
UTP201.091e-1637.29Small subunit processome component 20 homolog OS=H... [more]
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