TCONS_00007742 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007742
Unique NameTCONS_00007742
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length207

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007742 ID=TCONS_00007742|Name=TCONS_00007742|organism=Clytia hemisphaerica|type=transcript|length=207bp
AAGGGAGAAAATTTCGTTCACATATAAAGTGTATATGGGTTTCCAGAATA
GTAAAATCTTATTCATAGTGGCTTTGCTTTATATATTGGCGCTGTCAATT
CTCATATGTTTATTGgaaTCAGGTAAAATGAATGGTTACTTGAAAACTGG
AAGAGGAATGTCCAAAAATATATGGTTGCATTTTGTTTCTATGGTGACAG
TAGGGTA
Run BLAST on NCBI

transcript from alignment at sc0000079:584331..584896-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007742 ID=TCONS_00007742|Name=TCONS_00007742|organism=Clytia hemisphaerica|type=transcript|length=566bp|location=Sequence derived from alignment at sc0000079:584331..584896- (Clytia hemisphaerica)
AAGGGAGAAAATTTCGTTCACATATAAAGTGTATATGGGTTTCCAGAATA
GTAAAATCTTATTCATAGTGGCTTTGCTTTATATATTGGCGCTGTCAATT
CTCATATGTTTATTGGTAAGCTACTTTGATTCTAATAAAAATTGATCAAA
CTTTCAGAGAGTTTAATAATGCAGATTTTTGAGAGAGGGTTGGGTCAGAG
TTTGATCTTAGTCAACCCCTTTTTCCAGCAACGGGATACGACTACCACTT
CGAAAGTCAAACATAAAAAAGTGAAAGATTAATTCGACCAGAAATTAATA
AAATAAAATAAATTTTCTTCAAAAAGATACATATTTCAATTTTTACAGAT
CTTGAAGTTCATCCACTCTTCATTCTTTCCCTTAATATCTGAAAAAGTCT
GACTTTTACAAAATATTTTTCACATTTCTAGTACAACCAACTTTTGAAAG
AACGTTTTCTTTTTTTCTTCAAAGGAATCAGGTAAAATGAATGGTTACTT
GAAAACTGGAAGAGGAATGTCCAAAAATATATGGTTGCATTTTGTTTCTA
TGGTGACAGTAGGGTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004389XLOC_004389Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007742-exon-sc0000079-1575043694:584782..584896TCONS_00007742-exon-sc0000079-1575043694:584782..584896Clytia hemisphaericaexon
TCONS_00007742-exon-sc0000079-1575043694:584331..584422TCONS_00007742-exon-sc0000079-1575043694:584331..584422Clytia hemisphaericaexon
TCONS_00007742-exon-sc0000079-1510915933:584782..584896TCONS_00007742-exon-sc0000079-1510915933:584782..584896Clytia hemisphaericaexon
TCONS_00007742-exon-sc0000079-1510915933:584331..584422TCONS_00007742-exon-sc0000079-1510915933:584331..584422Clytia hemisphaericaexon
TCONS_00007742-exon-sc0000079-1491911889:584782..584896TCONS_00007742-exon-sc0000079-1491911889:584782..584896Clytia hemisphaericaexon
TCONS_00007742-exon-sc0000079-1491911889:584331..584422TCONS_00007742-exon-sc0000079-1491911889:584331..584422Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000079supercontigsc0000079:584331..584896 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	5.81005	3.6262	6.34697	3.1447	4.57848	4.01295	9.01659	2.08085	2.56611	0	0	0	12.8105	11.7296	1.45645	0	0	3.14052	11.3213	8.66056	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00007742 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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