TCONS_00007728 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007728
Unique NameTCONS_00007728
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1378

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007728 ID=TCONS_00007728|Name=TCONS_00007728|organism=Clytia hemisphaerica|type=transcript|length=1378bp
TATAAAGGGCTTTTCACACGGAAGGCAAAactcatatttcaaaaatatta
ccGACAATATGAAGATTATTNGCTGTAATATATAAAGGGCTTTTCACACG
GAAGGCAAAactcatatttcaaaaatattaccGACAATATGAAGATTATT
ATAATTTTGACTGCTCTTTTTGCTGCAGTCTATAGCACCTGCCGTGATAA
TGACATTTGCACAAAGTTTGACAAAGAGTACTGTAAAACAAGCTATTGGA
AACAAAAATGCAAGAATTATTGTGGAATATGTCACGTGACCACTACTACA
CCGGCTCCACCAGTTTCACCATCAGCAGATTGCAGAGATATTTACGATAG
GTGCCAAAGACTTGGAAAACACAATTGTTATGAGCCATACCTAAGGGCCT
ACTGTAGAAAGTACTGTGGAAACTGCATAAAACCGACCACTCAGCCAACA
CCGACAAGAACCTACCCTCCAATGGCGGGGACATATCCACCCTTGCCAGG
ATGTGGGCGCCCACAAATTGCTATATCCAGAGTTATTGGAGGAAAAGACG
CAAAAGCTCACTCATGGCCATGGCAAATTGGACTTCACCGTAGTGGAGAA
TTCATGTGTGGAGGATCTCTCATTAACCAACAATGGATTGTGACTGCAGC
TCACTGTGTCTTTGGAAGAGAAGCATTTCGTTTTCAAGTCAAACTAGgtg
ACCATAATAGAAAGGTTGACGAAGGAGAGCAATTCATCCAAGTTTCAAGG
ATCATTGTTCACGAGCAGTATAGAAGCagcaaattcaacaatgacatTGC
GTTACTGAAACTAGAAAGACCCGCTATTTTTGGACGAAATGTTCAACCAG
TCTGCTTACCTAACCAAGGAGATTCTCCACAAGTTGGCAGCAAATGTTAC
CTAACTGGTTGGGGAAAAATGACACACCCTGGGTTTTCCGTAAACATCCT
TCAACAACTTGCATTGACTATCCAAAGCAAACAGGCATGCACCGCGAAAA
ACAAAGTAACACCAATTACTGATCAAATGCTTTGCGCTGCCAACACTGAT
GTCTCTGCAAATCAATCTGGTTGCCATGGTGATTCAGGTGGTCCATTCGT
TTGTCAAAATGGCGATGGTTCATGGACATTACATGGAGCTGTCAGCTGGG
GATCACCAAGATGTGACATCAAGGAAGCTTTCACTGTCTTTGCAAGAGTT
GGACAATATCGACACTGGATTGAACAAAATATGAAGTGGTTTCATCAGTA
AACCAGATTTTAAATTTGTATAGATATAATATTGAATCACCAAACTTTTG
CGATTTGAaccaaataaaatataaaatattctAGATCGAAATTTTGGCTT
ACACGAAGACACATCTTTTCCCAAATTC
Run BLAST on NCBI

protein sequence of TCONS_00007728-protein

>TCONS_00007728-protein ID=TCONS_00007728-protein|Name=TCONS_00007728-protein|organism=Clytia hemisphaerica|type=polypeptide|length=370bp
MKIIIILTALFAAVYSTCRDNDICTKFDKEYCKTSYWKQKCKNYCGICHV
TTTTPAPPVSPSADCRDIYDRCQRLGKHNCYEPYLRAYCRKYCGNCIKPT
TQPTPTRTYPPMAGTYPPLPGCGRPQIAISRVIGGKDAKAHSWPWQIGLH
RSGEFMCGGSLINQQWIVTAAHCVFGREAFRFQVKLGDHNRKVDEGEQFI
QVSRIIVHEQYRSSKFNNDIALLKLERPAIFGRNVQPVCLPNQGDSPQVG
SKCYLTGWGKMTHPGFSVNILQQLALTIQSKQACTAKNKVTPITDQMLCA
ANTDVSANQSGCHGDSGGPFVCQNGDGSWTLHGAVSWGSPRCDIKEAFTV
FARVGQYRHWIEQNMKWFHQ
Run BLAST on NCBI

transcript from alignment at sc0000079:183023..185673-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007728 ID=TCONS_00007728|Name=TCONS_00007728|organism=Clytia hemisphaerica|type=transcript|length=2651bp|location=Sequence derived from alignment at sc0000079:183023..185673- (Clytia hemisphaerica)
TATAAAGGGCTTTTCACACGGAAGGCAAAACTCATATTTCAAAAATATTA
CCGACAATATGAAGATTATTNGCTGTAATATATAAAGGGCTTTTCACACG
GAAGGCAAAACTCATATTTCAAAAATATTACCGACAATATGAAGATTATT
ATAATTTTGACTGCTCTTTTTGCTGCAGTCTATAGCAGTAAGTATTACTA
TTAGACATGTGCGATGTTAACTAATTAACCTGAAAAACTTTAACTTGAAA
GGGATGATTTTTTGGAAAAATTTCCACTAAAAGATTTATTCGTGACCGCA
GTCGAAGGTGACCTCCTCTTTCGATAGCTATCAGCCTGAAGTCTTAGGAG
GGCGTCATTCATTATCCCTGGATTGCTTCAAAAATATCCTCCTTCCCTTA
CTTCCTTCTCTAAATTGCTACTGAGAATCAAACAGAGAGACATCAAGGAC
CATTTTTTGTACTAAAGTAAACCCAAGACCCTACCCACCATAGCCAGATT
ATTTTTCTTTGTACCCGTATCTTTCTAGTATTATTTGTTCATTTTTTTCT
TATTCATCTTTCATCTTCATTTTCTAGAAATTCATAGTGTTCTGAATTAC
TTATCTTTTCAACGGTGTATGATTTGCTGTTATTGAAGCATTGGTTTGGA
ACAGGCAAGCAAAACAAAAACCAAAATAATTCAAGCAAATGAACATTAGA
TCCTATAACTTTGTTTTCTAGCCTGCCGTGATAATGACATTTGCACAAAG
TTTGACAAAGAGTACTGTAAAACAAGCTATTGGAAACAAAAATGCAAGAA
TTATTGTGGAATATGTCACGTGACCACTACTACACCGGCTCCACCAGTTT
CACCATCAGCAGGTTGGTAAAGTTTTTCCATAATACACCCTTTAAGTCGT
AGGGTTTATCAAGAAAAATAAAAAGATACAAATTAGGATGGGGGCGCTTT
TTATTAGGAAACCTCGACTTTCGCTATATAAGTGCACATAGTGCATACTT
CCATTTGGGTCGATGCATATACTAACCATAGTCAAGAGGATAGCACTTGA
CCCAACCAACTTTGATTGATAAGGATTTCCCCGGCTTCAAGTTAACTTCA
CGTGTAAATAAAGCCAGACTACATAGTTTATAGTGAATAATTATTTTATT
TATACAATCCAGATTGCAGAGATATTTACGATAGGTGCCAAAGACTTGGA
AAACACAATTGTTATGAGCCATACCTAAGGGCCTACTGTAGAAAGTACTG
TGGAAACTGCATAAAACCGACCACTCAGCCAACACCGACAAGAACCTACC
CTCCAATGGCGGGGACATATCCACCCTTGCCAGGATGTGGGCGCCCACAA
ATTGCTATATCCAGAGTTATTGGAGGAAAAGACGCAAAAGCTCACTCATG
GCCATGGCAAATTGGACTTCACCGTAGTGGAGAATTCATGTGTGGAGGAT
CTCTCATTAACCAACAATGGATTGTGACTGCAGCTCACTGTGTCTTTGGA
AGAGAAGCATTTCGTTTTCAAGTCAAACTAGGTAAAAAATATGGGCCCTA
CTACAAATATATTTTAACGTGGCAGTGTGTGAGAGTTTGTGCTTTGTACT
ATGATTTCATGATGATTCTTCTGCGTTAAACGATTTTGAAATTACCATAG
AGACTTTTACGTGTTATTAGAGTATTTTGAGTACTTTTGCTTTTTCATTA
TTGTTTCTTTTTCTTCAGGTGACCATAATAGAAAGGTTGACGAAGGAGAG
CAATTCATCCAAGTTTCAAGGATCATTGTTCACGAGCAGTATAGAAGCAG
CAAATTCAACAATGACATTGCGTTACTGAAACTAGAAAGACCCGCTATTT
TTGGACGAAATGTTCAACCAGTCTGCTTACCTAACCAAGGAGATTCTCCA
CAAGTTGGCAGCAAATGTTACCTAACTGGTTAGTTAACTATGGAACAAGC
AAGCCAATATACACTTGCAATGTTTCTTTTTCTTGTTAAAATCTCGAACT
TGCCTATGGAAAATGTTTTTCGTTCACCTTTTGATGATTTGATTAATGGA
CCAATCCAAAAAGGAGTAGGTCAAAATCTAATCGAATTTGACCCTTGTTT
TCCGAAAGAAAAGGTTTATAGAAACCTTTAAACGTAATTTAGAAGTAATA
TTTACGCCTATTTAATATTCCTTACATCAGGTTGGGGAAAAATGACACAC
CCTGGGTTTTCCGTAAACATCCTTCAACAACTTGCATTGACTATCCAAAG
CAAACAGGCATGCACCGCGAAAAACAAAGTAACACCAATTACTGATCAAA
TGCTTTGCGCTGCCAACACTGATGTCTCTGCAAATCAATCTGGTTGCCAT
GGTGATTCAGGTGGTCCATTCGTTTGTCAAAATGGCGATGGTTCATGGAC
ATTACATGGAGCTGTCAGCTGGGGATCACCAAGATGTGACATCAAGGAAG
CTTTCACTGTCTTTGCAAGAGTTGGACAATATCGACACTGGATTGAACAA
AATATGAAGTGGTTTCATCAGTAAACCAGATTTTAAATTTGTATAGATAT
AATATTGAATCACCAAACTTTTGCGATTTGAACCAAATAAAATATAAAAT
ATTCTAGATCGAAATTTTGGCTTACACGAAGACACATCTTTTCCCAAATT
C

Coding sequence (CDS) from alignment at sc0000079:183023..185673-

>TCONS_00007728 ID=TCONS_00007728|Name=TCONS_00007728|organism=Clytia hemisphaerica|type=CDS|length=5565bp|location=Sequence derived from alignment at sc0000079:183023..185673- (Clytia hemisphaerica)
GTTGGGGAAAAATGACACACCCTGGGTTTTCCGTAAACATCCTTCAACAA
CTTGCATTGACTATCCAAAGCAAACAGGCATGCACCGCGAAAAACAAAGT
AACACCAATTACTGATCAAATGCTTTGCGCTGCCAACACTGATGTCTCTG
CAAATCAATCTGGTTGCCATGGTGATTCAGGTGGTCCATTCGTTTGTCAA
AATGGCGATGGTTCATGGACATTACATGGAGCTGTCAGCTGGGGATCACC
AAGATGTGACATCAAGGAAGCTTTCACTGTCTTTGCAAGAGTTGGACAAT
ATCGACACTGGATTGAACAAAATATGAAGTGGTTTCATCAGTAAGTGACC
ATAATAGAAAGGTTGACGAAGGAGAGCAATTCATCCAAGTTTCAAGGATC
ATTGTTCACGAGCAGTATAGAAGCAGCAAATTCAACAATGACATTGCGTT
ACTGAAACTAGAAAGACCCGCTATTTTTGGACGAAATGTTCAACCAGTCT
GCTTACCTAACCAAGGAGATTCTCCACAAGTTGGCAGCAAATGTTACCTA
ACTGATTGCAGAGATATTTACGATAGGTGCCAAAGACTTGGAAAACACAA
TTGTTATGAGCCATACCTAAGGGCCTACTGTAGAAAGTACTGTGGAAACT
GCATAAAACCGACCACTCAGCCAACACCGACAAGAACCTACCCTCCAATG
GCGGGGACATATCCACCCTTGCCAGGATGTGGGCGCCCACAAATTGCTAT
ATCCAGAGTTATTGGAGGAAAAGACGCAAAAGCTCACTCATGGCCATGGC
AAATTGGACTTCACCGTAGTGGAGAATTCATGTGTGGAGGATCTCTCATT
AACCAACAATGGATTGTGACTGCAGCTCACTGTGTCTTTGGAAGAGAAGC
ATTTCGTTTTCAAGTCAAACTAGCCTGCCGTGATAATGACATTTGCACAA
AGTTTGACAAAGAGTACTGTAAAACAAGCTATTGGAAACAAAAATGCAAG
AATTATTGTGGAATATGTCACGTGACCACTACTACACCGGCTCCACCAGT
TTCACCATCAGCAGATGAAGATTATTATAATTTTGACTGCTCTTTTTGCT
GCAGTCTATAGCAGTTGGGGAAAAATGACACACCCTGGGTTTTCCGTAAA
CATCCTTCAACAACTTGCATTGACTATCCAAAGCAAACAGGCATGCACCG
CGAAAAACAAAGTAACACCAATTACTGATCAAATGCTTTGCGCTGCCAAC
ACTGATGTCTCTGCAAATCAATCTGGTTGCCATGGTGATTCAGGTGGTCC
ATTCGTTTGTCAAAATGGCGATGGTTCATGGACATTACATGGAGCTGTCA
GCTGGGGATCACCAAGATGTGACATCAAGGAAGCTTTCACTGTCTTTGCA
AGAGTTGGACAATATCGACACTGGATTGAACAAAATATGAAGTGGTTTCA
TCAGTAAGTGACCATAATAGAAAGGTTGACGAAGGAGAGCAATTCATCCA
AGTTTCAAGGATCATTGTTCACGAGCAGTATAGAAGCAGCAAATTCAACA
ATGACATTGCGTTACTGAAACTAGAAAGACCCGCTATTTTTGGACGAAAT
GTTCAACCAGTCTGCTTACCTAACCAAGGAGATTCTCCACAAGTTGGCAG
CAAATGTTACCTAACTGATTGCAGAGATATTTACGATAGGTGCCAAAGAC
TTGGAAAACACAATTGTTATGAGCCATACCTAAGGGCCTACTGTAGAAAG
TACTGTGGAAACTGCATAAAACCGACCACTCAGCCAACACCGACAAGAAC
CTACCCTCCAATGGCGGGGACATATCCACCCTTGCCAGGATGTGGGCGCC
CACAAATTGCTATATCCAGAGTTATTGGAGGAAAAGACGCAAAAGCTCAC
TCATGGCCATGGCAAATTGGACTTCACCGTAGTGGAGAATTCATGTGTGG
AGGATCTCTCATTAACCAACAATGGATTGTGACTGCAGCTCACTGTGTCT
TTGGAAGAGAAGCATTTCGTTTTCAAGTCAAACTAGCCTGCCGTGATAAT
GACATTTGCACAAAGTTTGACAAAGAGTACTGTAAAACAAGCTATTGGAA
ACAAAAATGCAAGAATTATTGTGGAATATGTCACGTGACCACTACTACAC
CGGCTCCACCAGTTTCACCATCAGCAGATGAAGATTATTATAATTTTGAC
TGCTCTTTTTGCTGCAGTCTATAGCAGTTGGGGAAAAATGACACACCCTG
GGTTTTCCGTAAACATCCTTCAACAACTTGCATTGACTATCCAAAGCAAA
CAGGCATGCACCGCGAAAAACAAAGTAACACCAATTACTGATCAAATGCT
TTGCGCTGCCAACACTGATGTCTCTGCAAATCAATCTGGTTGCCATGGTG
ATTCAGGTGGTCCATTCGTTTGTCAAAATGGCGATGGTTCATGGACATTA
CATGGAGCTGTCAGCTGGGGATCACCAAGATGTGACATCAAGGAAGCTTT
CACTGTCTTTGCAAGAGTTGGACAATATCGACACTGGATTGAACAAAATA
TGAAGTGGTTTCATCAGTAAGTGACCATAATAGAAAGGTTGACGAAGGAG
AGCAATTCATCCAAGTTTCAAGGATCATTGTTCACGAGCAGTATAGAAGC
AGCAAATTCAACAATGACATTGCGTTACTGAAACTAGAAAGACCCGCTAT
TTTTGGACGAAATGTTCAACCAGTCTGCTTACCTAACCAAGGAGATTCTC
CACAAGTTGGCAGCAAATGTTACCTAACTGATTGCAGAGATATTTACGAT
AGGTGCCAAAGACTTGGAAAACACAATTGTTATGAGCCATACCTAAGGGC
CTACTGTAGAAAGTACTGTGGAAACTGCATAAAACCGACCACTCAGCCAA
CACCGACAAGAACCTACCCTCCAATGGCGGGGACATATCCACCCTTGCCA
GGATGTGGGCGCCCACAAATTGCTATATCCAGAGTTATTGGAGGAAAAGA
CGCAAAAGCTCACTCATGGCCATGGCAAATTGGACTTCACCGTAGTGGAG
AATTCATGTGTGGAGGATCTCTCATTAACCAACAATGGATTGTGACTGCA
GCTCACTGTGTCTTTGGAAGAGAAGCATTTCGTTTTCAAGTCAAACTAGC
CTGCCGTGATAATGACATTTGCACAAAGTTTGACAAAGAGTACTGTAAAA
CAAGCTATTGGAAACAAAAATGCAAGAATTATTGTGGAATATGTCACGTG
ACCACTACTACACCGGCTCCACCAGTTTCACCATCAGCAGATGAAGATTA
TTATAATTTTGACTGCTCTTTTTGCTGCAGTCTATAGCAGTTGGGGAAAA
ATGACACACCCTGGGTTTTCCGTAAACATCCTTCAACAACTTGCATTGAC
TATCCAAAGCAAACAGGCATGCACCGCGAAAAACAAAGTAACACCAATTA
CTGATCAAATGCTTTGCGCTGCCAACACTGATGTCTCTGCAAATCAATCT
GGTTGCCATGGTGATTCAGGTGGTCCATTCGTTTGTCAAAATGGCGATGG
TTCATGGACATTACATGGAGCTGTCAGCTGGGGATCACCAAGATGTGACA
TCAAGGAAGCTTTCACTGTCTTTGCAAGAGTTGGACAATATCGACACTGG
ATTGAACAAAATATGAAGTGGTTTCATCAGTAAGTGACCATAATAGAAAG
GTTGACGAAGGAGAGCAATTCATCCAAGTTTCAAGGATCATTGTTCACGA
GCAGTATAGAAGCAGCAAATTCAACAATGACATTGCGTTACTGAAACTAG
AAAGACCCGCTATTTTTGGACGAAATGTTCAACCAGTCTGCTTACCTAAC
CAAGGAGATTCTCCACAAGTTGGCAGCAAATGTTACCTAACTGATTGCAG
AGATATTTACGATAGGTGCCAAAGACTTGGAAAACACAATTGTTATGAGC
CATACCTAAGGGCCTACTGTAGAAAGTACTGTGGAAACTGCATAAAACCG
ACCACTCAGCCAACACCGACAAGAACCTACCCTCCAATGGCGGGGACATA
TCCACCCTTGCCAGGATGTGGGCGCCCACAAATTGCTATATCCAGAGTTA
TTGGAGGAAAAGACGCAAAAGCTCACTCATGGCCATGGCAAATTGGACTT
CACCGTAGTGGAGAATTCATGTGTGGAGGATCTCTCATTAACCAACAATG
GATTGTGACTGCAGCTCACTGTGTCTTTGGAAGAGAAGCATTTCGTTTTC
AAGTCAAACTAGCCTGCCGTGATAATGACATTTGCACAAAGTTTGACAAA
GAGTACTGTAAAACAAGCTATTGGAAACAAAAATGCAAGAATTATTGTGG
AATATGTCACGTGACCACTACTACACCGGCTCCACCAGTTTCACCATCAG
CAGATGAAGATTATTATAATTTTGACTGCTCTTTTTGCTGCAGTCTATAG
CAGTTGGGGAAAAATGACACACCCTGGGTTTTCCGTAAACATCCTTCAAC
AACTTGCATTGACTATCCAAAGCAAACAGGCATGCACCGCGAAAAACAAA
GTAACACCAATTACTGATCAAATGCTTTGCGCTGCCAACACTGATGTCTC
TGCAAATCAATCTGGTTGCCATGGTGATTCAGGTGGTCCATTCGTTTGTC
AAAATGGCGATGGTTCATGGACATTACATGGAGCTGTCAGCTGGGGATCA
CCAAGATGTGACATCAAGGAAGCTTTCACTGTCTTTGCAAGAGTTGGACA
ATATCGACACTGGATTGAACAAAATATGAAGTGGTTTCATCAGTAAGTGA
CCATAATAGAAAGGTTGACGAAGGAGAGCAATTCATCCAAGTTTCAAGGA
TCATTGTTCACGAGCAGTATAGAAGCAGCAAATTCAACAATGACATTGCG
TTACTGAAACTAGAAAGACCCGCTATTTTTGGACGAAATGTTCAACCAGT
CTGCTTACCTAACCAAGGAGATTCTCCACAAGTTGGCAGCAAATGTTACC
TAACTGATTGCAGAGATATTTACGATAGGTGCCAAAGACTTGGAAAACAC
AATTGTTATGAGCCATACCTAAGGGCCTACTGTAGAAAGTACTGTGGAAA
CTGCATAAAACCGACCACTCAGCCAACACCGACAAGAACCTACCCTCCAA
TGGCGGGGACATATCCACCCTTGCCAGGATGTGGGCGCCCACAAATTGCT
ATATCCAGAGTTATTGGAGGAAAAGACGCAAAAGCTCACTCATGGCCATG
GCAAATTGGACTTCACCGTAGTGGAGAATTCATGTGTGGAGGATCTCTCA
TTAACCAACAATGGATTGTGACTGCAGCTCACTGTGTCTTTGGAAGAGAA
GCATTTCGTTTTCAAGTCAAACTAGCCTGCCGTGATAATGACATTTGCAC
AAAGTTTGACAAAGAGTACTGTAAAACAAGCTATTGGAAACAAAAATGCA
AGAATTATTGTGGAATATGTCACGTGACCACTACTACACCGGCTCCACCA
GTTTCACCATCAGCAGATGAAGATTATTATAATTTTGACTGCTCTTTTTG
CTGCAGTCTATAGCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004382XLOC_004382Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007728-exon-sc0000079-1575043694:185487..185673TCONS_00007728-exon-sc0000079-1575043694:185487..185673Clytia hemisphaericaexon
TCONS_00007728-exon-sc0000079-1575043694:184812..184952TCONS_00007728-exon-sc0000079-1575043694:184812..184952Clytia hemisphaericaexon
TCONS_00007728-exon-sc0000079-1575043694:184143..184511TCONS_00007728-exon-sc0000079-1575043694:184143..184511Clytia hemisphaericaexon
TCONS_00007728-exon-sc0000079-1575043694:183746..183955TCONS_00007728-exon-sc0000079-1575043694:183746..183955Clytia hemisphaericaexon
TCONS_00007728-exon-sc0000079-1575043694:183023..183493TCONS_00007728-exon-sc0000079-1575043694:183023..183493Clytia hemisphaericaexon
TCONS_00007728-exon-sc0000079-1510915933:185487..185673TCONS_00007728-exon-sc0000079-1510915933:185487..185673Clytia hemisphaericaexon
TCONS_00007728-exon-sc0000079-1510915933:184812..184952TCONS_00007728-exon-sc0000079-1510915933:184812..184952Clytia hemisphaericaexon
TCONS_00007728-exon-sc0000079-1510915933:184143..184511TCONS_00007728-exon-sc0000079-1510915933:184143..184511Clytia hemisphaericaexon
TCONS_00007728-exon-sc0000079-1510915933:183746..183955TCONS_00007728-exon-sc0000079-1510915933:183746..183955Clytia hemisphaericaexon
TCONS_00007728-exon-sc0000079-1510915933:183023..183493TCONS_00007728-exon-sc0000079-1510915933:183023..183493Clytia hemisphaericaexon
TCONS_00007728-exon-sc0000079-1491911889:185487..185673TCONS_00007728-exon-sc0000079-1491911889:185487..185673Clytia hemisphaericaexon
TCONS_00007728-exon-sc0000079-1491911889:184812..184952TCONS_00007728-exon-sc0000079-1491911889:184812..184952Clytia hemisphaericaexon
TCONS_00007728-exon-sc0000079-1491911889:184143..184511TCONS_00007728-exon-sc0000079-1491911889:184143..184511Clytia hemisphaericaexon
TCONS_00007728-exon-sc0000079-1491911889:183746..183955TCONS_00007728-exon-sc0000079-1491911889:183746..183955Clytia hemisphaericaexon
TCONS_00007728-exon-sc0000079-1491911889:183023..183493TCONS_00007728-exon-sc0000079-1491911889:183023..183493Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007728-proteinTCONS_00007728-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000079supercontigsc0000079:183023..185673 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0606976	0.0591897	0	0	0.122781	0.129364	0.390182	0.255698	0.58821	0.791949	0.184484	0.222333	13.9148	9.72758	1.62183	4.66317	34.8927	43.3603	48.464	35.5859	108.61	115.533	14.4922	19.4194	18.9339	25.3127	0	0	0	0.102958
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001314Peptidase_S1A
IPR001254Trypsin_dom
IPR033116TRYPSIN_SER
IPR018114TRYPSIN_HIS
IPR009003Peptidase_S1_PA
Vocabulary: Molecular Function
TermDefinition
GO:0004252serine-type endopeptidase activity
Vocabulary: Biological Process
TermDefinition
GO:0006508proteolysis
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006508 proteolysis
molecular_function GO:0004252 serine-type endopeptidase activity
Blast
[Close]
BLAST of TCONS_00007728 vs. Swiss-Prot (Human)
Match: CTRL (Chymotrypsin-like protease CTRL-1 OS=Homo sapiens GN=CTRL PE=2 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 1.720e-51
Identity = 105/251 (41.83%), Postives = 145/251 (57.77%), Query Frame = 1 
Query:  499 GCGRPQI--AIS---RVIGGKDAKAHSWPWQIGLHRSGEF-MCGGSLINQQWIVTAAHCVFGREAFRFQVKLGDHNRKVD-EGEQFIQVSRIIVHEQYRSSKFNNDIALLKLERPAIFGRNVQPVCLPNQGDSPQVGSKCYLTGWGKMTHPG-FSVNILQQLALTIQSKQACTAKNKVTPITDQMLCAANTDVSANQSGCHGDSGGPFVCQNGDGSWTLHGAVSWGSPRCDIKEAFTVFARVGQYRHWIEQ 1227
            GCG P I  A+S   R++ G++A   SWPWQ+ L  S  F  CGGSLI+Q W+VTAAHC       R  V LG+++R  + E  Q + VSR I H  + S+  NND+ LLKL  PA +   + PVCL +  ++   G  C  TGWG+++  G  +   LQQ+AL + +   C  +   + ITD M+CA      A  S C GDSGGP VCQ G+ +W L G VSWG+  C+++ A  V+ RV ++  WI Q
Sbjct:   18 GCGIPAIKPALSFSQRIVNGENAVLGSWPWQVSLQDSSGFHFCGGSLISQSWVVTAAHC--NVSPGRHFVVLGEYDRSSNAEPLQVLSVSRAITHPSWNSTTMNNDVTLLKLASPAQYTTRISPVCLASSNEALTEGLTCVTTGWGRLSGVGNVTPAHLQQVALPLVTVNQCR-QYWGSSITDSMICAGG----AGASSCQGDSGGPLVCQKGN-TWVLIGIVSWGTKNCNVR-APAVYTRVSKFSTWINQ 259
The following BLAST results are available for this feature:
BLAST of TCONS_00007728 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CTRL1.720e-5141.83Chymotrypsin-like protease CTRL-1 OS=Homo sapiens ... [more]
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