TCONS_00007706 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007706
Unique NameTCONS_00007706
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1823

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007706 ID=TCONS_00007706|Name=TCONS_00007706|organism=Clytia hemisphaerica|type=transcript|length=1823bp
gCATTCTATACAATATGGTTCTTGAGTGGTCCAATCATTGTTTTGATTGC
TGCAAGCTCTGTCGAACCTTACGCTAGAGAGCAGATAATGAACGGTGTTG
ATAGGTCTGTCGCCTTCAGCGCCTTTGCATTTTTCTTGattttaacaCGC
CCTTCTGCAGCTAATAAGAATTTCCCCTACCACGTACGCACAACACAAAT
TGGGTTTATTGATGATACGGCAAATCCGAATTTCGCAAGATCAACGTACA
AGCCGGAAAATGAGGAAGCTGAATTAGCACGAAGAATGAATACTTTGTTT
TCTGCGCACaacaATGAAGGCACCCGTCCGTTAACAGGTTCAATGGCAAG
CCCTCCCTCTTCCATGAACAGTCGCCACTCCTCCATCAACACAAATAATA
CCCTTAATATGGGCGAATCTTTAGGGCGTAGAAATCCTTCATATAACGAT
AATGACGATCGCCCAAATGCCTCTACGAACCGCCCTACTTTGTTAGATCT
CAAGGATAGACTAACAACGCCCTCTCCCCACCCTAATGCTTCATTACCGC
CACCAATGAATTACTCCACCAATCAAAAtacgaaattaaaaaaagaaacg
aaaaacgaaaatgaaacacGCACAGAATCAACTTTTGTACAAAATTCGAA
TTTCGTCACCACTGGAGGAGAAATCTATCAACAAGAAGAACAGCTTCCTA
AAAACCCTCCACCGTTGATTAGAACAGaacaacaaatgacgtcattgttt
gcGgCCAAACCATCACCTTCCCAAAATTTGTCTCCAATGACACCAAACCC
TCCTTCGACGTCACCAAACTTCTTCATACCAGAACCTACACTGACACCTG
ATTTCGAACAAAGTCCTCCTTTACCACAAACTGGAAAGCCAATAGATTCT
AGTAATAACAACACTATTAAAGAGGATATGGAGAATCCTACAGATAGTCA
AAACAATGGTGGAACTTCACCAAGTCAAGAGAccaataatgaaaataatt
caTCGAATAAATCACAAAATGAACAAAACAATGAATTAGTTCAATCTCCA
CGtaaaaagaaagggaaaaagAAAAGTACCAAGAAGAAGAGAAAATCAGA
AGCTAACTCACCCTCTGATCCGAATCATCTACCGCCCTTATCTGCAGCAC
CCTCCACTTTACCGCCCTTGAGAGGTGGAAAGTTACCACCTTTAGGGAAG
AATTCTGACAGTACGGTATGAGATTGGACATATTTTCTGTTGGTGCTTGA
AATAGTTCCCTTGGGGGTGATGGTTTCAATAGTGGAAGTAAGATGGGTGA
ATATAAAAGTGTTTTCGTCTGGGAAGAGTATTGAAAATATGAAGTGATAC
TGTATATCAGTGAGGAGAGAGTCTGTCACCATGTTTTCTGAACACCGAGC
CTGGAAGGGTtcgagactcgaacacacagTCTATTACGGTGCAAACCTTT
GATCGAAGCTACCAACCGGCAGAATGTAAGTGAGACACAGTGATGGATGA
TTGCTTTATCCAGATGGTGAGCGAATGTATCATGAGTTGATGGGAGGTTA
AACTTAGTACTGCCCTAGTACTGATCTAAAGTTGAAAGATATTATCGAAA
ATAAGTTTAGAAGTTTCATCTATCAGTACTTATAAACTGTTTTGTCGGGG
TTATTTGAAAGGTAAAATTCAGCTGTCTTAGTGTGACCTTTTTTGTTGGT
GATAGAGAACATCAAGTTTTGATACTTGGtaattccattttatatccata
catggggtgtacgaacatttccagagcgTAATTCGAGAAGAATTTCCAAG
GTGAaaacttattttaaaatttt
Run BLAST on NCBI

transcript from alignment at sc0000079:202784..206213+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007706 ID=TCONS_00007706|Name=TCONS_00007706|organism=Clytia hemisphaerica|type=transcript|length=3430bp|location=Sequence derived from alignment at sc0000079:202784..206213+ (Clytia hemisphaerica)
gCATTCTATACAATATGGTGAGTGACAtcatgttttatttatttagctta
cgcctttttatataaaattcaaaaacaggCTCGGAGATGCTTAGGGTCGA
GGGCTTTACAAGGTTGAAAATGCTCATAAGGGTACTTAAATCTCAAgcaa
aaatttagggaaatactgaaaatccgtaaaatcccAGCCAGAAAAAGCCA
AAGTcgggaaaaaaacatttttcgtaggctcaaggtAGTGCTTACCATTA
TGCTTAAATTTTcgccatatctgagcctagtaTGTTATAACtgtaatgct
tataaaagaaaaaatatgtactCAAATGAGCACTTTAAATGGTGTTATGG
TATATACGATAacataaaatcatttttcatgGCAGGTTCTTGAGTGGTCC
AATCATTGTTTTGATTGCTGCAAGCTCTGTCGAACCTTACGCTAGGTGAG
TTTTCATCTTTATCTTTCTCTAAACCTGTCACAAGTTGTCTGTTTGAACT
GATAGCCCAAATGGCTAACAACATCACTTCAACGTCCACTCATGTTAAAT
AAACCATATTATTTTGTCGTGCCAGTTTGAGGTGTGCAACCTTGACTTTT
GATATGCGACGTTATTGTTTCAAATctgatttgattgttgatttgagctt
ttttattcttctttcaGAGAGCAGATAATGAACGGTGTTGATAGGTCTGT
CGCCTTCAGCGCCTTTGCATTTTTCTTGGTGAGTAAATTTTGTCATCTTT
TATGCGAATTAAAGTGTGCCACGTGTCAATGTTTCAAGAAAATGATTCAC
TTCAGACTTTCTAAGGATCTTGATTGCTGCTGCATTTCTTTGATATGGCA
TTTGTACGTGCTTAGGGAGTCTGCTAAGAGCTTATTAAGAGAAATATTTA
AAACCATTTATTTAAGATAATCACGTACTTCCTATCTTCAGTTGTCTCGT
TTTTGAATTCTCTTTTAAGGTTGTCCTTGGTCTACGCAAAAGTTATTTCA
ATCTATAATTAAATTTTGCAATCAAATTACATTGATTTTctaatttgaat
ttctttattttttagattttaacaCGCCCTTCTGCAGCTAATAAGAATTT
CCCCTACCACGTACGCACAACACAAATTGGGTTTATTGATGATACGGCAA
ATCCGAATTTCGCAAGATCAACGTACAAGCCGGAAAATGAGGAAGCTGAA
TTAGCACGAAGAATGAATACTTTGTTTTCTGCGCACGTCAGTATTTTATT
CCAAGTATTTATACCGATGAGTCTTGCAAgcttttcattttgtttcattt
acGTTAAGAAAAATATCTTCAGCAGGAAGTAATTTCTGCGGCCGAAAAAT
AATCCGAAAAATCGTATTTtacgggaattaattttcgccgTTTTGTCTTA
TTTTGAACACgtatctttcattttcctaaggattttttaaatttctttta
taaaaatagcCCAATTTGTAATTCGTGGGTTCTGATTTTCGCGGTTTTAA
GCGAAAATTTGTTCCGCGAAGATTAGTCTTGTTCGAAAGTAGTTAGGACC
AGTGCAACATTTGCAACTTAATATTtttgttgtaattttttttacagaac
aATGAAGGCACCCGTCCGTTAACAGGTTCAATGGCAAGCCCTCCCTCTTC
CATGAACAGTCGCCACTCCTCCATCAACACAAATAATACCCTTAATATGG
GCGAATCTTTAGGGCGTAGAAATCCTTCATATAACGATAATGACGATCGC
CCAAATGCCTCTACGAACCGCCCTACTTTGTTAGATCTCAAGGATAGACT
AACAACGCCCTCTCCCCACCCTAATGCTTCATTACCGCCACCAATGAATT
ACTCCACCAATCAAAAtacgaaattaaaaaaagaaacgaaaaacgaaaat
gaaacacGCACAGAATCAACTTTTGTACAAAATTCGAATTTCGTCACCAC
TGGAGGAGAAATCTATCAACAAGAAGAACAGCTTCCTAAAAACCCTCCAC
CGTTGATTAGAACAGaacaacaaatgacgtcattgtttgcGGTAAATATA
ACTCTGCTTCAATCTGAACAGTTTGATATCAGATTAATTGTATTAATTTC
AGTCAGAACCTGACAGATAGCTGGTATACTCAAAAgtgtattttcatttc
tttcaactcTAGTCGCGTAAGAGTTAAAATTTGAAGAGGAAAGTAACAAC
TTTTTGTCCTTGTAAGCCGTTCATTATACGAAGAACTTATCATATTTTCT
GAAAATACGAACTTAGCCCCGGATGTTTATAAATagatgaataaataaat
tattgaCGTGAATCACGTGACATTTCAATGAGATTCttgtatttcaaaat
tctttttcaggCCAAACCATCACCTTCCCAAAATTTGTCTCCAATGACAC
CAAACCCTCCTTCGACGTCACCAAACTTCTTCATACCAGAACCTACACTG
ACACCTGATTTCGAACAAAGTCCTCCTTTACCACAAACTGGAAAGCCAAT
AGATTCTAGTAATAACAACACTATTAAAGAGGATATGGAGAATCCTACAG
ATAGTCAAAACAATGGTGGAACTTCACCAAGTCAAGAGAccaataatgaa
aataattcaTCGAATAAATCACAAAATGAACAAAACAATGAATTAGTTCA
ATCTCCACGtaaaaagaaagggaaaaagAAAAGTACCAAGAAGAAGAGAA
AATCAGAAGCTAACTCACCCTCTGATCCGAATCATCTACCGCCCTTATCT
GCAGCACCCTCCACTTTACCGCCCTTGAGAGGTGGAAAGTTACCACCTTT
AGGGAAGAATTCTGACAGTACGGTATGAGATTGGACATATTTTCTGTTGG
TGCTTGAAATAGTTCCCTTGGGGGTGATGGTTTCAATAGTGGAAGTAAGA
TGGGTGAATATAAAAGTGTTTTCGTCTGGGAAGAGTATTGAAAATATGAA
GTGATACTGTATATCAGTGAGGAGAGAGTCTGTCACCATGTTTTCTGAAC
ACCGAGCCTGGAAGGGTtcgagactcgaacacacagTCTATTACGGTGCA
AACCTTTGATCGAAGCTACCAACCGGCAGAATGTAAGTGAGACACAGTGA
TGGATGATTGCTTTATCCAGATGGTGAGCGAATGTATCATGAGTTGATGG
GAGGTTAAACTTAGTACTGCCCTAGTACTGATCTAAAGTTGAAAGATATT
ATCGAAAATAAGTTTAGAAGTTTCATCTATCAGTACTTATAAACTGTTTT
GTCGGGGTTATTTGAAAGGTAAAATTCAGCTGTCTTAGTGTGACCTTTTT
TGTTGGTGATAGAGAACATCAAGTTTTGATACTTGGtaattccattttat
atccatacatggggtgtacgaacatttccagagcgTAATTCGAGAAGAAT
TTCCAAGGTGAaaacttattttaaaatttt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004368XLOC_004368Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007706-exon-sc0000079-1491911889:202784..202800TCONS_00007706-exon-sc0000079-1491911889:202784..202800Clytia hemisphaericaexon
TCONS_00007706-exon-sc0000079-1510915933:202784..202800TCONS_00007706-exon-sc0000079-1510915933:202784..202800Clytia hemisphaericaexon
TCONS_00007706-exon-sc0000079-1575043694:202784..202800TCONS_00007706-exon-sc0000079-1575043694:202784..202800Clytia hemisphaericaexon
TCONS_00007706-exon-sc0000079-1491911889:203169..203228TCONS_00007706-exon-sc0000079-1491911889:203169..203228Clytia hemisphaericaexon
TCONS_00007706-exon-sc0000079-1510915933:203169..203228TCONS_00007706-exon-sc0000079-1510915933:203169..203228Clytia hemisphaericaexon
TCONS_00007706-exon-sc0000079-1575043694:203169..203228TCONS_00007706-exon-sc0000079-1575043694:203169..203228Clytia hemisphaericaexon
TCONS_00007706-exon-sc0000079-1491911889:203451..203511TCONS_00007706-exon-sc0000079-1491911889:203451..203511Clytia hemisphaericaexon
TCONS_00007706-exon-sc0000079-1510915933:203451..203511TCONS_00007706-exon-sc0000079-1510915933:203451..203511Clytia hemisphaericaexon
TCONS_00007706-exon-sc0000079-1575043694:203451..203511TCONS_00007706-exon-sc0000079-1575043694:203451..203511Clytia hemisphaericaexon
TCONS_00007706-exon-sc0000079-1491911889:203849..204019TCONS_00007706-exon-sc0000079-1491911889:203849..204019Clytia hemisphaericaexon
TCONS_00007706-exon-sc0000079-1510915933:203849..204019TCONS_00007706-exon-sc0000079-1510915933:203849..204019Clytia hemisphaericaexon
TCONS_00007706-exon-sc0000079-1575043694:203849..204019TCONS_00007706-exon-sc0000079-1575043694:203849..204019Clytia hemisphaericaexon
TCONS_00007706-exon-sc0000079-1491911889:204381..204824TCONS_00007706-exon-sc0000079-1491911889:204381..204824Clytia hemisphaericaexon
TCONS_00007706-exon-sc0000079-1510915933:204381..204824TCONS_00007706-exon-sc0000079-1510915933:204381..204824Clytia hemisphaericaexon
TCONS_00007706-exon-sc0000079-1575043694:204381..204824TCONS_00007706-exon-sc0000079-1575043694:204381..204824Clytia hemisphaericaexon
TCONS_00007706-exon-sc0000079-1491911889:205144..206213TCONS_00007706-exon-sc0000079-1491911889:205144..206213Clytia hemisphaericaexon
TCONS_00007706-exon-sc0000079-1510915933:205144..206213TCONS_00007706-exon-sc0000079-1510915933:205144..206213Clytia hemisphaericaexon
TCONS_00007706-exon-sc0000079-1575043694:205144..206213TCONS_00007706-exon-sc0000079-1575043694:205144..206213Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000079supercontigsc0000079:202784..206213 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.581806	0.439996	0.092026	0.30597	4.36185	5.59131	5.792	5.51855	3.94038	2.20385	2.6498	2.08286	2.77612	3.0738	1.24178	1.15933	1.46942	1.79899	2.59984	2.86117	2.49061	3.0163	1.75685	1.97581	4.96907	3.84574	3.71936	2.68837	1.65962	0.583113
Blast
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BLAST of TCONS_00007706 vs. Swiss-Prot (Human)
Match: TM145 (Transmembrane protein 145 OS=Homo sapiens GN=TMEM145 PE=2 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 4.100e-17
Identity = 37/67 (55.22%), Postives = 49/67 (73.13%), Query Frame = 1 
Query:    1 AFYTIWFLSGPIIVLIAASSVEPYAREQIMNGVDRSVAFSAFAFFLILTRPSAANKNFPYHVRTTQI 201
            A YT+WF + P++ LIA   +  +ARE+I+NG+   +   A   FLI+TRPSAANKNFPYHVRT+QI
Sbjct:  353 AAYTLWFFAVPVMALIANFGIPKWAREKIVNGIQLGIHLYAHGVFLIMTRPSAANKNFPYHVRTSQI 419
The following BLAST results are available for this feature:
BLAST of TCONS_00007706 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TM1454.100e-1755.22Transmembrane protein 145 OS=Homo sapiens GN=TMEM1... [more]
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