TCONS_00007702 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007702
Unique NameTCONS_00007702
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1189

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007702 ID=TCONS_00007702|Name=TCONS_00007702|organism=Clytia hemisphaerica|type=transcript|length=1189bp
AGGTGAAACAATCAAGTTTTTTATTTACTGAACCTTTGAAAGGTTTTCCT
ATATAAATACCCCTGTTTTGTGTGAAATGTCACATTCAAAACTCGTCAGG
ATGAAGACTTTGATCGTTTTAGCAGCCTTGATTGTGGCCACTTTGGCTTG
CACAAATAAATCTACTTTTTGTGATCAATACGATAAAGCCATTTGTCATC
ATGATTGGATGAAAGTCAACTGCCAAAAGTTGTGTAATCTATGTGGTCCA
TCTACACAAGCTCCAACACAAGCACCAGGAGGATGCGTCGACAAGAATAC
AAATTGTCCACATTGGGCATCACATTGCAAAACCAATGCATACGTGAAAG
AAAACTGCAAGAAAAGTTGTAACATGTGTGGTCCAAGTACCCCTGCCCCA
CCAACAAGTGCACCAGGAACCTACCCACCCCAAGGATCATGTGGACGTCC
ACAAGTTGCAATGTCCAGAGTTGTCGGTGGAAAAGATGCAAAAGCTCATT
CATGGCCATGGCAAATCGGACTTCACCGCAACGGTGGATTTATGTGCGGA
GGTTCAATCATCAACAGCCGATGGGTTGTTACTGCTGCTCATTGTGTACA
TCGAAGAAGTGCGAGTGACTTCAAAGTCAAATTAGGAGACCACGATAGGC
GAAGAAACGAAGGTGAACAATTCATCCAAGTCTCAAAAATCATCACTCAT
CAAGGTTATGGAAGATTGAACAATGATATTGCTTTGTTACAATTGGCTAC
TCCAGCAAAATTCGGACGAAATGTTCAACCAGTCTGCTTACCCAACCAAG
GAGATGCTCCACAAGTTGGTAGCAAGTGTTACATTACGGgaTGGGGGAAA
ATAAGACATCCTGGTTACTCACACACCATCCTTCAACAACTTGCTTTGAC
CATCCAAGACAAATCTACTTGTTCAAGAATGAATGGAAAATATGCACCAA
TCACTGACGCTATGCTTTGTGCTGCTAACACTGATGTCTCTGCCAATCAA
TCTGGTTGCCATGGTGATTCAGGTGGTCCATTTGTTTGTCAAAACAGTAA
TGGTTCATGGACATTACATGGAGCTGTTAGCTGGGGATCACCAAGATGTG
ACATCAAAGATGCTTTCACTGTCTTTGCCAGAGTTGGACAATTTAGAAAC
TGGATCGAACAAAACATGAAATGAAATGTTAAATAGtat
Run BLAST on NCBI

transcript from alignment at sc0000079:139243..142337+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007702 ID=TCONS_00007702|Name=TCONS_00007702|organism=Clytia hemisphaerica|type=transcript|length=3095bp|location=Sequence derived from alignment at sc0000079:139243..142337+ (Clytia hemisphaerica)
AGGTGAAACAATCAAGTTTTTTATTTACTGAACCTTTGAAAGGTTTTCCT
ATATAAATACCCCTGTTTTGTGTGAAATGTCACATTCAAAACTCGTCAGG
ATGAAGACTTTGATCGTTTTAGCAGCCTTGATTGTGGCCACTTTGGGTAA
GTCATCTGTTCCAATTAATTCATGAAAACGAAATATCTTAAAGTGAAGGA
GGaatttttggtggaaagaaaatattttccgccaatccgccaaatttaaa
attattttttcatgaattcccCTAAGAGAGATTTGCTTTTTCGATAATGG
TTTtggtaaaaaatataatttaaccctattcggcctagggggggggggct
gtccctgttcggaggtcaaattattggtaatagctcctgaaataatagag
cttttgccatgaaatcttctgtaaattcctaacttttattcagcttaaaa
taaaaaaaaatttgacacctaaaaatttcaCACCTTGaacatgatgacat
ttctgacagtaaggtgtcacaaaaattgacacttttacaataaaaattta
ttttttatgtcaaatatatcctttaaaccgtaatttattgaatatttaag
ataaaataagcattctaaactcaggcaacttttttcttaagcctttgaaa
atacaatagctatttataataacaaaggaaatgagttttgtcaaaagtta
ccttatgtgacaaggatcttgtgtgccaaattcatccaaaaagaaccatt
agatcgaaagttaaGTACAGGAAAAATgaccaaattaaatttccgccaAA
ATAGTTTCCTAAAAGGTTGTTGATACCGATTTTGTCAACTAAATTGCATC
TTGACCATCGGAACATTAAACAATAGAtattaatacaccttttctacCGT
AGCTGTCTATTCACCGCGTGGacatttttttgtccattttaccacCTTAA
AACTGCCCCAGTCTATTTTTCGCaactaaagacaatagaaaaaaatgtaa
aaaaaggattggatcgagtttggggtggtaaattaaatattaAAGTTGCA
CGCGCCTGGCCgcacgactacggtcgaaaaggtgtattaagaATAATGAG
TTTGCCTATGGTGTACTTACATATACAAATTTTAGCAACATTCTATTTCA
ATATTTAGCTTGCACAAATAAATCTACTTTTTGTGATCAATACGATAAAG
CCATTTGTCATCATGATTGGATGAAAGTCAACTGCCAAAAGTTGTGTAAT
CTATGTGGTCCATCTACACAAGCTCCAACACAAGCACCAGGTAAAATGAT
CAGAATATATCCATAATTAACGGAATTTTTGAGACTCCTTATATCAGTGT
TCTAAATGTTacaaaattttttatataaaatcaTTTCTGCTCAAGTAAAA
TTCCATAGTATCCGTTTGTTGGAATGATTTTCGAATGTCACACTCATTGA
TGATTAAATTTCAGGAGGATGCGTCGACAAGAATACAAATTGTCCACATT
GGGCATCACATTGCAAAACCAATGCATACGTGAAAGAAAACTGCAAGAAA
AGTTGTAACATGTGTGGTCCAAGTACCCCTGCCCCACCAACAAGTGCACC
AGGAACCTACCCACCCCAAGGATCATGTGGACGTCCACAAGTTGCAATGT
CCAGAGTTGTCGGTGGAAAAGATGCAAAAGCTCATTCATGGCCATGGCAA
ATCGGACTTCACCGCAACGGTGGATTTATGTGCGGAGGTTCAATCATCAA
CAGCCGATGGGTTGTTACTGCTGCTCATTGTGTACATCGAAGAAGTGCGA
GTGACTTCAAAGTCAAATTAGGTAATCAGTGCTAGTTCCTATTGTCATTT
TCCTTTTATCTGTCCTTGAGTATATGTATGGCTCATTGACCATCGAGTTA
CACATTTTTATTTGTAAGCATATCTTAACTCATATCATGGAAAAACTTAA
GTAAGCATTGTCTAAGCATATACTGAACCTCAAGTTAACAAAATTATAAA
GCCCTTAATTTCCTTAAATCCAAAAAACATGCTTATAAAATGCAACTTAT
TATCATCACATTGACTTAAAATAAGCATATGCAAGAAACGTAGGCTCAAA
ATATCACACTATGCTTATAAGAAACCGTGTAGTATATATTAGTAGAATAA
AAGACTTTTTACTCAAATATTCAGGAGACCACGATAGGCGAAGAAACGAA
GGTGAACAATTCATCCAAGTCTCAAAAATCATCACTCATCAAGGTTATGG
AAGATTGAACAATGATATTGCTTTGTTACAATTGGCTACTCCAGCAAAAT
TCGGACGAAATGTTCAACCAGTCTGCTTACCCAACCAAGGAGATGCTCCA
CAAGTTGGTAGCAAGTGTTACATTACGGGTAGGATAGCACATTGTTTATA
TTTTCTGTATGTTATCATTCAATATTGATTGGAAATGAGACAAAACTAAA
AGTACCAGTTTCTTATAGACAAcaaataaattattaaaaattacaaGTAA
AATTTCCCACCTTGATCGCCTCGTAAGAACTTATAATTATGAAAGGTTAA
TTCAAATCCAATTGTGAGTTAATAAATTATTTTCTGGTATTCTGGTTCTG
ACTGTCCATCTTTTGCTCTTCCAATTTTGATTGTTAATTACAATAGGCAA
GAAGTTGGTTGGCTCAAGTAAAGGCTTTGCTTTCTTTTGGCGTCTCAAGT
AAAGGCTTTgctcttttttgacgtcaataaaatttcttcttttaggaTGG
GGGAAAATAAGACATCCTGGTTACTCACACACCATCCTTCAACAACTTGC
TTTGACCATCCAAGACAAATCTACTTGTTCAAGAATGAATGGAAAATATG
CACCAATCACTGACGCTATGCTTTGTGCTGCTAACACTGATGTCTCTGCC
AATCAATCTGGTTGCCATGGTGATTCAGGTGGTCCATTTGTTTGTCAAAA
CAGTAATGGTTCATGGACATTACATGGAGCTGTTAGCTGGGGATCACCAA
GATGTGACATCAAAGATGCTTTCACTGTCTTTGCCAGAGTTGGACAATTT
AGAAACTGGATCGAACAAAACATGAAATGAAATGTTAAATAGtat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004365XLOC_004365Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007702-exon-sc0000079-1491911889:139243..139388TCONS_00007702-exon-sc0000079-1491911889:139243..139388Clytia hemisphaericaexon
TCONS_00007702-exon-sc0000079-1510915933:139243..139388TCONS_00007702-exon-sc0000079-1510915933:139243..139388Clytia hemisphaericaexon
TCONS_00007702-exon-sc0000079-1575043694:139243..139388TCONS_00007702-exon-sc0000079-1575043694:139243..139388Clytia hemisphaericaexon
TCONS_00007702-exon-sc0000079-1491911889:140401..140532TCONS_00007702-exon-sc0000079-1491911889:140401..140532Clytia hemisphaericaexon
TCONS_00007702-exon-sc0000079-1510915933:140401..140532TCONS_00007702-exon-sc0000079-1510915933:140401..140532Clytia hemisphaericaexon
TCONS_00007702-exon-sc0000079-1575043694:140401..140532TCONS_00007702-exon-sc0000079-1575043694:140401..140532Clytia hemisphaericaexon
TCONS_00007702-exon-sc0000079-1491911889:140707..141063TCONS_00007702-exon-sc0000079-1491911889:140707..141063Clytia hemisphaericaexon
TCONS_00007702-exon-sc0000079-1510915933:140707..141063TCONS_00007702-exon-sc0000079-1510915933:140707..141063Clytia hemisphaericaexon
TCONS_00007702-exon-sc0000079-1575043694:140707..141063TCONS_00007702-exon-sc0000079-1575043694:140707..141063Clytia hemisphaericaexon
TCONS_00007702-exon-sc0000079-1491911889:141417..141620TCONS_00007702-exon-sc0000079-1491911889:141417..141620Clytia hemisphaericaexon
TCONS_00007702-exon-sc0000079-1510915933:141417..141620TCONS_00007702-exon-sc0000079-1510915933:141417..141620Clytia hemisphaericaexon
TCONS_00007702-exon-sc0000079-1575043694:141417..141620TCONS_00007702-exon-sc0000079-1575043694:141417..141620Clytia hemisphaericaexon
TCONS_00007702-exon-sc0000079-1491911889:141988..142337TCONS_00007702-exon-sc0000079-1491911889:141988..142337Clytia hemisphaericaexon
TCONS_00007702-exon-sc0000079-1510915933:141988..142337TCONS_00007702-exon-sc0000079-1510915933:141988..142337Clytia hemisphaericaexon
TCONS_00007702-exon-sc0000079-1575043694:141988..142337TCONS_00007702-exon-sc0000079-1575043694:141988..142337Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000079supercontigsc0000079:139243..142337 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.0409895	0	0	0	0	0	0	0.252412	0.333045	0.22447	188.193	200.436	135.718	418.026	214.394	275.163	988.326	871.99	959.388	1132.36	522.481	732.965	447.235	478.04	0	0	0	0.187579
Blast
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BLAST of TCONS_00007702 vs. Swiss-Prot (Human)
Match: CTRL (Chymotrypsin-like protease CTRL-1 OS=Homo sapiens GN=CTRL PE=2 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 6.873e-52
Identity = 108/256 (42.19%), Postives = 149/256 (58.20%), Query Frame = 2 
Query:  440 CGRPQV--AMS---RVVGGKDAKAHSWPWQIGLHRNGGF-MCGGSIINSRWVVTAAHCVHRRSASDFKVKLGDHDRRRN-EGEQFIQVSKIITHQGYGR--LNNDIALLQLATPAKFGRNVQPVCLPNQGDAPQVGSKCYITGWGKIRHPG-YSHTILQQLALTIQDKSTCSRMNGKYAPITDAMLCAANTDVSANQSGCHGDSGGPFVCQNSNGSWTLHGAVSWGSPRCDIKDAFTVFARVGQFRNWIEQNMK*N 1177
            CG P +  A+S   R+V G++A   SWPWQ+ L  + GF  CGGS+I+  WVVTAAHC    S     V LG++DR  N E  Q + VS+ ITH  +    +NND+ LL+LA+PA++   + PVCL +  +A   G  C  TGWG++   G  +   LQQ+AL +   + C +  G  + ITD+M+CA      A  S C GDSGGP VCQ  N +W L G VSWG+  C+++ A  V+ RV +F  WI Q +  N
Sbjct:   19 CGIPAIKPALSFSQRIVNGENAVLGSWPWQVSLQDSSGFHFCGGSLISQSWVVTAAHC--NVSPGRHFVVLGEYDRSSNAEPLQVLSVSRAITHPSWNSTTMNNDVTLLKLASPAQYTTRISPVCLASSNEALTEGLTCVTTGWGRLSGVGNVTPAHLQQVALPLVTVNQCRQYWG--SSITDSMICAGG----AGASSCQGDSGGPLVCQKGN-TWVLIGIVSWGTKNCNVR-APAVYTRVSKFSTWINQVIAYN 264
The following BLAST results are available for this feature:
BLAST of TCONS_00007702 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CTRL6.873e-5242.19Chymotrypsin-like protease CTRL-1 OS=Homo sapiens ... [more]
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