TCONS_00007662 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007662
Unique NameTCONS_00007662
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length312

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007662 ID=TCONS_00007662|Name=TCONS_00007662|organism=Clytia hemisphaerica|type=transcript|length=312bp
TCATTCCCGGCCATCATACACAAATGTTTATTGACGTTCTCAATCGTTGG
AATTATTGCAAGTCTTTCCGGCTCTGTCATggcttttgatttgattgtcc
gaaAAAAGAGTGCTTTGTATCACGGACGGATACAATTACAAATGATATGC
GGTTACGTTACAAACGGTTGCGTCATGATTTTCTACGCTTGTTACATCGT
TTTAACTATAGAGCGTGTGACCTCAATATATTTCCCGTACGATTCCGCGC
GAATCCGTGGTTACTTGACCAAGATTTGGATAGTTTTGTTAGTGTTTTGT
GTAGTGAGTGCG
Run BLAST on NCBI

protein sequence of TCONS_00007662-protein

>TCONS_00007662-protein ID=TCONS_00007662-protein|Name=TCONS_00007662-protein|organism=Clytia hemisphaerica|type=polypeptide|length=104bp
SFPAIIHKCLLTFSIVGIIASLSGSVMAFDLIVRKKSALYHGRIQLQMIC
GYVTNGCVMIFYACYIVLTIERVTSIYFPYDSARIRGYLTKIWIVLLVFC
VVSA
Run BLAST on NCBI

transcript from alignment at sc0000078:298569..298880

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007662 ID=TCONS_00007662|Name=TCONS_00007662|organism=Clytia hemisphaerica|type=transcript|length=312bp|location=Sequence derived from alignment at sc0000078:298569..298880 (Clytia hemisphaerica)
CGCACTCACTACACAAAACACTAACAAAACTATCCAAATCTTGGTCAAGT
AACCACGGATTCGCGCGGAATCGTACGGGAAATATATTGAGGTCACACGC
TCTATAGTTAAAACGATGTAACAAGCGTAGAAAATCATGACGCAACCGTT
TGTAACGTAACCGCATATCATTTGTAATTGTATCCGTCCGTGATACAAAG
CACTCTTTTttcggacaatcaaatcaaaagccATGACAGAGCCGGAAAGA
CTTGCAATAATTCCAACGATTGAGAACGTCAATAAACATTTGTGTATGAT
GGCCGGGAATGA

Coding sequence (CDS) from alignment at sc0000078:298569..298880

>TCONS_00007662 ID=TCONS_00007662|Name=TCONS_00007662|organism=Clytia hemisphaerica|type=CDS|length=312bp|location=Sequence derived from alignment at sc0000078:298569..298880 (Clytia hemisphaerica)
CGCACTCACTACACAAAACACTAACAAAACTATCCAAATCTTGGTCAAGT
AACCACGGATTCGCGCGGAATCGTACGGGAAATATATTGAGGTCACACGC
TCTATAGTTAAAACGATGTAACAAGCGTAGAAAATCATGACGCAACCGTT
TGTAACGTAACCGCATATCATTTGTAATTGTATCCGTCCGTGATACAAAG
CACTCTTTTttcggacaatcaaatcaaaagccATGACAGAGCCGGAAAGA
CTTGCAATAATTCCAACGATTGAGAACGTCAATAAACATTTGTGTATGAT
GGCCGGGAATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004335XLOC_004335Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007662-exon-sc0000078-1491911889:298569..298880TCONS_00007662-exon-sc0000078-1491911889:298569..298880Clytia hemisphaericaexon
TCONS_00007662-exon-sc0000078-1510915933:298569..298880TCONS_00007662-exon-sc0000078-1510915933:298569..298880Clytia hemisphaericaexon
TCONS_00007662-exon-sc0000078-1575043694:298569..298880TCONS_00007662-exon-sc0000078-1575043694:298569..298880Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007662-proteinTCONS_00007662-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000078supercontigsc0000078:298569..298880 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.03298	0.671547	0.389865	1.14427	0	0	0.442687	0.414438	0.870474	0	0	0	1.14501	0	0	0	2.06788	1.58963	2.92822	2.29813	0.998746	1.94861	3.15839	3.94823	2.58782	4.94908	2.83285	1.00776	0.764353	0.389377
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00007662 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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