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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007655 ID=TCONS_00007655|Name=TCONS_00007655|organism=Clytia hemisphaerica|type=transcript|length=746bp
AAAATGGGAAGAATTCTGCAATGAGACATCTTGCCATGGTTTCAACCAGG
CTTTCACTTCGAAGAGCCTTGGGAGGCGTGTCTTCTGGTGCTTTTGGTTA
GTAGGGATGATTGGTCTTGCTGCTTATCTCTTTTATGGTGTTATTGGACA
GTATGCCAGTAATGAATTCAATGTATCCAAGGAAATTCGTTTCGATTTAG
AGGAAGTTGATTTCCCGAGAGTGACAATCTGTAATACAAACCCTTCTTCA
AATACCAAACTGCAGAAAATTGGCTACCCAGGCGATGAGAAGGAATTGTT
GACCTTCTACCAAGAAATAAGAGGAAAGGTAGTTAATATGTCTTCACCGA
CCACTAAGAATGTATTGAACCATTTCTACAGTAAGAATCTAAACACCACA
CACGAGATTATTTCAGCTTTAGAAATTGGGAAAGAGGAGATGTTCAATGA
CCCCTTCTTGAACACGGCAGTCCCCTACAGATGTCAATTTGACGGTAAAC
GATGCGGAGTGGACCAATTCACTGAAACATATTCGGAAAGATCTGGTAAA
TGCGTGGTTTTCTCCAACGATaataaagtagttttgaaaagtAAGACTGA
AAGTAATGGCCTTCAACTTATAATGAACCTTCATGGAGACGAGAGGCTGG
AGAATCAAGCCCTTTTCAATGGCTTGGTTGTATTCATTCATCCTCACCAA
CAAATGTGGGCGTCAGCTCTGGCAAAGAAAGTGTACATCACACCTG Run BLAST on NCBI protein sequence of TCONS_00007655-protein >TCONS_00007655-protein ID=TCONS_00007655-protein|Name=TCONS_00007655-protein|organism=Clytia hemisphaerica|type=polypeptide|length=248bp
KWEEFCNETSCHGFNQAFTSKSLGRRVFWCFWLVGMIGLAAYLFYGVIGQ
YASNEFNVSKEIRFDLEEVDFPRVTICNTNPSSNTKLQKIGYPGDEKELL
TFYQEIRGKVVNMSSPTTKNVLNHFYSKNLNTTHEIISALEIGKEEMFND
PFLNTAVPYRCQFDGKRCGVDQFTETYSERSGKCVVFSNDNKVVLKSKTE
SNGLQLIMNLHGDERLENQALFNGLVVFIHPHQQMWASALAKKVYITP Run BLAST on NCBI transcript from alignment at sc0000078:168516..169261 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00007655 ID=TCONS_00007655|Name=TCONS_00007655|organism=Clytia hemisphaerica|type=transcript|length=746bp|location=Sequence derived from alignment at sc0000078:168516..169261 (Clytia hemisphaerica)
CAGGTGTGATGTACACTTTCTTTGCCAGAGCTGACGCCCACATTTGTTGG
TGAGGATGAATGAATACAACCAAGCCATTGAAAAGGGCTTGATTCTCCAG
CCTCTCGTCTCCATGAAGGTTCATTATAAGTTGAAGGCCATTACTTTCAG
TCTTacttttcaaaactactttattATCGTTGGAGAAAACCACGCATTTA
CCAGATCTTTCCGAATATGTTTCAGTGAATTGGTCCACTCCGCATCGTTT
ACCGTCAAATTGACATCTGTAGGGGACTGCCGTGTTCAAGAAGGGGTCAT
TGAACATCTCCTCTTTCCCAATTTCTAAAGCTGAAATAATCTCGTGTGTG
GTGTTTAGATTCTTACTGTAGAAATGGTTCAATACATTCTTAGTGGTCGG
TGAAGACATATTAACTACCTTTCCTCTTATTTCTTGGTAGAAGGTCAACA
ATTCCTTCTCATCGCCTGGGTAGCCAATTTTCTGCAGTTTGGTATTTGAA
GAAGGGTTTGTATTACAGATTGTCACTCTCGGGAAATCAACTTCCTCTAA
ATCGAAACGAATTTCCTTGGATACATTGAATTCATTACTGGCATACTGTC
CAATAACACCATAAAAGAGATAAGCAGCAAGACCAATCATCCCTACTAAC
CAAAAGCACCAGAAGACACGCCTCCCAAGGCTCTTCGAAGTGAAAGCCTG
GTTGAAACCATGGCAAGATGTCTCATTGCAGAATTCTTCCCATTTT Coding sequence (CDS) from alignment at sc0000078:168516..169261 >TCONS_00007655 ID=TCONS_00007655|Name=TCONS_00007655|organism=Clytia hemisphaerica|type=CDS|length=744bp|location=Sequence derived from alignment at sc0000078:168516..169261 (Clytia hemisphaerica)
AGGTGTGATGTACACTTTCTTTGCCAGAGCTGACGCCCACATTTGTTGGT
GAGGATGAATGAATACAACCAAGCCATTGAAAAGGGCTTGATTCTCCAGC
CTCTCGTCTCCATGAAGGTTCATTATAAGTTGAAGGCCATTACTTTCAGT
CTTacttttcaaaactactttattATCGTTGGAGAAAACCACGCATTTAC
CAGATCTTTCCGAATATGTTTCAGTGAATTGGTCCACTCCGCATCGTTTA
CCGTCAAATTGACATCTGTAGGGGACTGCCGTGTTCAAGAAGGGGTCATT
GAACATCTCCTCTTTCCCAATTTCTAAAGCTGAAATAATCTCGTGTGTGG
TGTTTAGATTCTTACTGTAGAAATGGTTCAATACATTCTTAGTGGTCGGT
GAAGACATATTAACTACCTTTCCTCTTATTTCTTGGTAGAAGGTCAACAA
TTCCTTCTCATCGCCTGGGTAGCCAATTTTCTGCAGTTTGGTATTTGAAG
AAGGGTTTGTATTACAGATTGTCACTCTCGGGAAATCAACTTCCTCTAAA
TCGAAACGAATTTCCTTGGATACATTGAATTCATTACTGGCATACTGTCC
AATAACACCATAAAAGAGATAAGCAGCAAGACCAATCATCCCTACTAACC
AAAAGCACCAGAAGACACGCCTCCCAAGGCTCTTCGAAGTGAAAGCCTGG
TTGAAACCATGGCAAGATGTCTCATTGCAGAATTCTTCCCATTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00007655-exon-sc0000078-1491911889:168516..169261 | TCONS_00007655-exon-sc0000078-1491911889:168516..169261 | Clytia hemisphaerica | exon |
| TCONS_00007655-exon-sc0000078-1510915933:168516..169261 | TCONS_00007655-exon-sc0000078-1510915933:168516..169261 | Clytia hemisphaerica | exon |
| TCONS_00007655-exon-sc0000078-1575043694:168516..169261 | TCONS_00007655-exon-sc0000078-1575043694:168516..169261 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000078 | supercontig | sc0000078:168516..169261 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR001873 | ENaC |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006814 | sodium ion transport |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016020 | membrane |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005272 | sodium channel activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006814 |
sodium ion transport |
| cellular_component |
GO:0016020 |
membrane |
| molecular_function |
GO:0005272 |
sodium channel activity |
Blast
The following BLAST results are available for this feature:
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