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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007651 ID=TCONS_00007651|Name=TCONS_00007651|organism=Clytia hemisphaerica|type=transcript|length=1938bp
GGTCATAACATGTGGTcacctagaagataagaacacatatttctaaaaaa
cctttccgccggctgcttctggaTAAATCTCTGCCCATGATATATTCTAA
AATAAGAGATGCTCTTGCTCCActagccaaaatttggcaaaacaaaaatg
tatgtcGACtactgactgaactttgctgaTGTATCACATGATTGGAGAGT
ATATGAAGCTTGCTGACGCCCAGAAAGAAGTTTCGGAAATGGTGGAATCT
TTCCAAAATGTACATGGGTTTCCCATAAGGGCGCTTTTGTGGCCAAATCA
AAATTAGGATTTTCAAGATTAGAAAATTAGCTTCTCAAATCAACAAGACA
GCTTTTTAGTTTTTCAGACCGAAAGATATTTCTCTTGGAATTTATCCTTT
ATTTATTATGGAAGTGGTTCTATTAAATTCCCGAGACATCTTCCCACGCC
CCTAAACGTCGAACTTGAGAGAGGAGGTTGTAATGCTACACTATGGACAc
agtcaaaataatttttcaaggCAAAGGTGCAATTTTACCAAGAATCTTAG
ACTTGAGAGATTTTTCTCTAATATTCTTAGTCAAGGAAAAAGGACTATAT
TTTCGCTGTAAATCGATAGATGATTCTTGGGAATCAATTCGACCTAGAGG
TATTGCCATAGCTTTTCCAGACAATATTGAGGAAGCCTATTTAACGGCTT
CACCCCTGCCACCAGAGGAAAACACAAGCCGTGCAAAAGATTCAAACAGT
ACAAACCCTTCGACCCAAGACTTTTTTCGAGGTCAAGGGGACGACGGGGG
ACCTCGGTACTAGGGCGGTGCCCTCAATTAGTACCAtgttataagaatat
caatCTATCAAGCATCGTCGATGATGAGATACAAGATGGGGCAGACATTC
CTGTCGACCTAAATAAGTTGCATAGCTCAAATTCTAAATTCACCATCGAT
GACTTACAGAAAGAAATATCCTCACAACTTGGAAGAGACAAGACTTTCAT
CATTACAAATAAGAAAGGATTTCCTATTCATGACATTCCCAACACAAGAG
GTAAGTTATtagtattgaaaaattaaatttagtttAGACGCCTATCTATT
TCTACTTGAAAAGGACGAAACTATTTGATCACTCGAACGAGTTGTAATTC
ATGACATGGCATGGCGTAGCCACAAACTTTCGGTTGGGGGGATTGTAAAA
ATCTTGACCTGTTTTagcaaggacacttgtatagcgaagCGGACACTTTA
ggacgctatacaagtgtccttggttTTAGGGGAAACTTTCGGAGAAGACC
TTTCTGATAACGTTAGCGCCACATaagtaaaaatttatttatttaattta
aaacGTCAAACAGCTGATAGAAAGTGGCTTCAACTTTGCAAAATTGACTT
CTAAACCACTGCGGCAATTCTGCTTATCTGAGCCCCTTTACCCTGATCAA
CCCGACTCAATATGGCATTTCagagtttaatttttttttcaggtaaagAA
AACTGGGATAACAAGACAATAATAAGAGGAATCGAATCATCCAAATTTTC
AACATGGTCCCCGATATTTTACCATGACGTGaaacaaaattatgaaatac
TTCAAAGGCTCCCATGCGCTCCCAGGTAActtcatgttgtttttttttat
ttaagacttgacacaatttttgattgacTTCTACGTTTGACCAAATATCC
TGATTTTGCCGAACTCACTTGACTGATTTGCTGGAACTTAAAACTCAGCA
ATTCCAATGTATCAGAATTGTTCCTTTTTTTGGCGCTTTTGAgccttatt
gttcttataaaaaaatagcgAAGTATACTTTGGCTGAGGATGAGTCTGTT
AAAACCAGTACTTTCTTAGTAATTTCTTACTgagaggctcagattgttct
taattttgttCTTAAGCTTTGGCCAAATTTCAACTTCG Run BLAST on NCBI protein sequence of TCONS_00007651-protein >TCONS_00007651-protein ID=TCONS_00007651-protein|Name=TCONS_00007651-protein|organism=Clytia hemisphaerica|type=polypeptide|length=106bp
MDTVKIIFQGKGAILPRILDLRDFSLIFLVKEKGLYFRCKSIDDSWESIR
PRGIAIAFPDNIEEAYLTASPLPPEENTSRAKDSNSTNPSTQDFFRGQGD
DGGPRY Run BLAST on NCBI transcript from alignment at sc0000078:111556..113493 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00007651 ID=TCONS_00007651|Name=TCONS_00007651|organism=Clytia hemisphaerica|type=transcript|length=1938bp|location=Sequence derived from alignment at sc0000078:111556..113493 (Clytia hemisphaerica)
CGAAGTTGAAATTTGGCCAAAGCTTAAGaacaaaattaagaacaatctga
gcctctcAGTAAGAAATTACTAAGAAAGTACTGGTTTTAACAGACTCATC
CTCAGCCAAAGTATACTTcgctatttttttataagaacaataaggcTCAA
AAGCGCCAAAAAAAGGAACAATTCTGATACATTGGAATTGCTGAGTTTTA
AGTTCCAGCAAATCAGTCAAGTGAGTTCGGCAAAATCAGGATATTTGGTC
AAACGTAGAAgtcaatcaaaaattgtgtcaagtcttaaataaaaaaaaac
aacatgaagTTACCTGGGAGCGCATGGGAGCCTTTGAAgtatttcataat
tttgtttCACGTCATGGTAAAATATCGGGGACCATGTTGAAAATTTGGAT
GATTCGATTCCTCTTATTATTGTCTTGTTATCCCAGTTTTctttacctga
aaaaaaaattaaactctGAAATGCCATATTGAGTCGGGTTGATCAGGGTA
AAGGGGCTCAGATAAGCAGAATTGCCGCAGTGGTTTAGAAGTCAATTTTG
CAAAGTTGAAGCCACTTTCTATCAGCTGTTTGACgttttaaattaaataa
ataaatttttacttATGTGGCGCTAACGTTATCAGAAAGGTCTTCTCCGA
AAGTTTCCCCTAAaaccaaggacacttgtatagcgtccTAAAGTGTCCGc
ttcgctatacaagtgtccttgctAAAACAGGTCAAGATTTTTACAATCCC
CCCAACCGAAAGTTTGTGGCTACGCCATGCCATGTCATGAATTACAACTC
GTTCGAGTGATCAAATAGTTTCGTCCTTTTCAAGTAGAAATAGATAGGCG
TCTaaactaaatttaatttttcaatactaATAACTTACCTCTTGTGTTGG
GAATGTCATGAATAGGAAATCCTTTCTTATTTGTAATGATGAAAGTCTTG
TCTCTTCCAAGTTGTGAGGATATTTCTTTCTGTAAGTCATCGATGGTGAA
TTTAGAATTTGAGCTATGCAACTTATTTAGGTCGACAGGAATGTCTGCCC
CATCTTGTATCTCATCATCGACGATGCTTGATAGattgatattcttataa
caTGGTACTAATTGAGGGCACCGCCCTAGTACCGAGGTCCCCCGTCGTCC
CCTTGACCTCGAAAAAAGTCTTGGGTCGAAGGGTTTGTACTGTTTGAATC
TTTTGCACGGCTTGTGTTTTCCTCTGGTGGCAGGGGTGAAGCCGTTAAAT
AGGCTTCCTCAATATTGTCTGGAAAAGCTATGGCAATACCTCTAGGTCGA
ATTGATTCCCAAGAATCATCTATCGATTTACAGCGAAAATATAGTCCTTT
TTCCTTGACTAAGAATATTAGAGAAAAATCTCTCAAGTCTAAGATTCTTG
GTAAAATTGCACCTTTGccttgaaaaattattttgactgTGTCCATAGTG
TAGCATTACAACCTCCTCTCTCAAGTTCGACGTTTAGGGGCGTGGGAAGA
TGTCTCGGGAATTTAATAGAACCACTTCCATAATAAATAAAGGATAAATT
CCAAGAGAAATATCTTTCGGTCTGAAAAACTAAAAAGCTGTCTTGTTGAT
TTGAGAAGCTAATTTTCTAATCTTGAAAATCCTAATTTTGATTTGGCCAC
AAAAGCGCCCTTATGGGAAACCCATGTACATTTTGGAAAGATTCCACCAT
TTCCGAAACTTCTTTCTGGGCGTCAGCAAGCTTCATATACTCTCCAATCA
TGTGATACAtcagcaaagttcagtcagtaGTCgacatacatttttgtttt
gccaaattttggctagTGGAGCAAGAGCATCTCTTATTTTAGAATATATC
ATGGGCAGAGATTTAtccagaagcagccggcggaaaggttttttagaaat
atgtgttcttatcttctaggtgACCACATGTTATGACC Coding sequence (CDS) from alignment at sc0000078:111556..113493 >TCONS_00007651 ID=TCONS_00007651|Name=TCONS_00007651|organism=Clytia hemisphaerica|type=CDS|length=321bp|location=Sequence derived from alignment at sc0000078:111556..113493 (Clytia hemisphaerica)
CTAGTACCGAGGTCCCCCGTCGTCCCCTTGACCTCGAAAAAAGTCTTGGG
TCGAAGGGTTTGTACTGTTTGAATCTTTTGCACGGCTTGTGTTTTCCTCT
GGTGGCAGGGGTGAAGCCGTTAAATAGGCTTCCTCAATATTGTCTGGAAA
AGCTATGGCAATACCTCTAGGTCGAATTGATTCCCAAGAATCATCTATCG
ATTTACAGCGAAAATATAGTCCTTTTTCCTTGACTAAGAATATTAGAGAA
AAATCTCTCAAGTCTAAGATTCTTGGTAAAATTGCACCTTTGccttgaaa
aattattttgactgTGTCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00007651-exon-sc0000078-1491911889:111556..113493 | TCONS_00007651-exon-sc0000078-1491911889:111556..113493 | Clytia hemisphaerica | exon |
| TCONS_00007651-exon-sc0000078-1510915933:111556..113493 | TCONS_00007651-exon-sc0000078-1510915933:111556..113493 | Clytia hemisphaerica | exon |
| TCONS_00007651-exon-sc0000078-1575043694:111556..113493 | TCONS_00007651-exon-sc0000078-1575043694:111556..113493 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000078 | supercontig | sc0000078:111556..113493 . |
Blast
The following BLAST results are available for this feature:
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