TCONS_00007613 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007613
Unique NameTCONS_00007613
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2964

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007613 ID=TCONS_00007613|Name=TCONS_00007613|organism=Clytia hemisphaerica|type=transcript|length=2964bp
CTAACATTCTTTTTCTACACATTATCAAGATTTTAGGGAAAAACTGAACT
GCATCAAACATTTTCCTAGATATTTGTCTTTAGTAGTAGTTTTATTTCTA
AAGAATCATCTTTTTTTagtaacaaaaaacaaaaaacaaaatggctgctg
GTAGGTTTATAGTAATGAGATGTCCTTCAGATGAGTTGTCACTCTCCaat
aaattagttttcaatCCAAATGATATGGTTGAGATACTTAAAACTGAAAA
GGTTCAAGAACATAATGTCTATGCTGAAGCACAAAACCGTTATTTTGGTA
TAGCTTCACATCAAAAAGTCCCAAGGGGCAAAGTTGGTCTTAGTGGGATG
CAAAGAGAGTTTTTGGGAACATCAGAACAAACTGAAGTAGATATCAAAAT
GAATAGTGGTGCTACCCATTCAAAGTTCTGTATTTCATCATTAACCGTTG
AAGTAGATTTTCTGTTGAAGAAAAATATCACTAATGAAGCCTATGACACT
GATAAATTACAAACACAATTTCGAGATCAGTTCAATCAAATACCTTTTTA
TAACGAACAGAGACTTGCTTTCAAATTCCAAAAGCTGCCCTACATaagtt
tgaaagtaaaatctttcaaatatttgcttgaaggccaacatggttcccat
GGTTCCCATGGTATTTTGAATCAAAACACACTGATAGTgtttgataaaaa
tgaagaatctGTCATCAAATTGACAGGAAAGTCTAGAGGAAAATCAGCAA
TGCCCAACATTATTAATCCAGATTGGAATTTCTCACAAATGGGTATTGGC
GGTTTGGATAATGAATTCTCGGGAATCTTTCGGCGTGCTTTTGCATCAAG
AGTTTTCCCACCTGATTTGATTGAAGACCTTGGTATGCAGCATGTTAAGG
GAATCCTTCTCTACGGTCCACCTGGTACAGGTAAAACCTTGATGGCTCGA
CAAATCGGGAAAATGTTGAATGCTCGTGAACCCAAGATCGTTAATGGTCC
TGAAATCTTGAATAAATATGTTGGCGAGTCAGAAGCCAACATTCGTAAAT
TATTTGAAGATGCTGAAGCAGATCAGAAAAAACTTGGCAGTCATAGTGGT
TTACACATTATTATATTGGATGAGATTGATGCTATTTGTAAACAAAGAGG
AACAGTTTCTGGAAGTACTGGTGTATCAGATACTGTTGTTAATCAATTGC
TGTCAAAGATTGATGGTGTAGAACAACTGAACAACATCCTGCTCATTGGG
ATGACAAATCGTAAAGATTTGATTGATGATGCCTTATTACGTCCTGGTCG
TTTGGAAGTTCAAATGGAAATCAGCCTACCAAATGAAAAGGGTCGAGTTC
AAATCTTGAATATCCATACGGCTAAACTTAAAGCCAATTACAAATTGGAA
GCTGATTTTGACATTGATTCACTTGCGGCTCAAACTAAAAACTTCAGTGG
AGCAGAATTGGAAGGTGTTGTAAGAGCTGCAACCACAACAGCAATGAATC
GATTGGTCAAAGCGGACTCTGCTGTCAAAATTGACCCTGATGCTGTTGAG
AACCTGAAAGTCAGCCAAGCCGATTTCCTACATGCCATTGAGAATGACAT
CAAACCTGCTTTCGGTGCTGGTGTTGAAGATTCTGATCATTATATGTCCA
ATGGTATCATCAAATATTCCGATACCATTTCTCACATCCTTCAAGATGGC
CAACTTTTGATTAAGCAAACACGATTGGGTCAGCTGGTTTCACCTGTCAC
CGTCCTGTTGGAGGGTCCAGGAGGGAGTGGAAAGACAGCCTTAGCTGCCC
ATCTTGCGTATAAGATGTCTGAAATTCCTTTCATCAAAGTAGTATCTGCT
GAAAATATGATTGGATTTTCAGAAAGTGCCAAGTGCCAAGCCATCAGGAA
AGTCTTTGATGATGCATACAGATCAGAGCTCAGTTGTATCATAGTGGATG
ATATTGAGAGATTGATTGACTATGTTCCTATTGGTCCACGTTTCTCAAAT
ATCATCCTCCAAGCTTTGATAGTATTGCTGAAGAAGAAGACACGCCGTGG
TAAAAAGTTGTTGATCATTGCTACCACAAGTAGCAAAGATGTTTTGAGCC
AGATGGGAATGTTGAATTGTTTCAATACCGTCATCCATGTGCCGACCATC
ACCAGAGTGGAGCATTTGATCAAAGTCGTTGAAGATCTGGATGTTTTCTC
TTATAATGACAAGCTGGATATCAAAAGTGAGCTGGAAGGGAAACAAATCC
ACATCGCCATGAAACATCTTATTTCACTTGTTGAAATGGCTAACCAACAT
TCATCAAAAGCATCCAAGTTCATTTCTTTACTTGAAGAGCAAGGAGCTCT
AAAACCCAACTTCTcttaaaaaacatattttgaatttattttgggAAGGG
TATCAAGTTCTGTTAGACTGTCTTTGAATGTAATTGCACTtaatttttta
cttaaaaaatctGTCTACTAGAAACCTGGGAAAATTGTATTTCAACACGA
TTTTGTTGAAACAAGGATGTTAACTGCAAAGTCGATATTACATTCCGTTC
ACCTGAAGAATCCTGCATTataatacgcatgcgtaatttgtcgttctttt
aacttttaaataTGTAGTTCATCttcgtgataaacaaagaggaatgaatt
tGTAGAGGTGGACAAACCAAGCGGGTCGGGTGGACggtgaaatttgtcgt
tttttatgaaatttgcttttctttttgtctatttctgGTAAAATtaggat
tctttagattaaCCCCCTCTTTATTATAAACATGGTTCTGTTTTAATGAA
ATAATTCTATATTAGTTGCTTGGGTTCGCTTAAGGTGTTTGATATCGGAT
ATAATAATGTTTAGTtaagtaattttaatttattctttTAATGAATAATA
ATGTGGTAATTTTTATGCATctttatttgattgttttttgaatgaaaaaa
tatttagtgGCTCG
Run BLAST on NCBI

protein sequence of TCONS_00007613-protein

>TCONS_00007613-protein ID=TCONS_00007613-protein|Name=TCONS_00007613-protein|organism=Clytia hemisphaerica|type=polypeptide|length=742bp
MAAGRFIVMRCPSDELSLSNKLVFNPNDMVEILKTEKVQEHNVYAEAQNR
YFGIASHQKVPRGKVGLSGMQREFLGTSEQTEVDIKMNSGATHSKFCISS
LTVEVDFLLKKNITNEAYDTDKLQTQFRDQFNQIPFYNEQRLAFKFQKLP
YISLKVKSFKYLLEGQHGSHGSHGILNQNTLIVFDKNEESVIKLTGKSRG
KSAMPNIINPDWNFSQMGIGGLDNEFSGIFRRAFASRVFPPDLIEDLGMQ
HVKGILLYGPPGTGKTLMARQIGKMLNAREPKIVNGPEILNKYVGESEAN
IRKLFEDAEADQKKLGSHSGLHIIILDEIDAICKQRGTVSGSTGVSDTVV
NQLLSKIDGVEQLNNILLIGMTNRKDLIDDALLRPGRLEVQMEISLPNEK
GRVQILNIHTAKLKANYKLEADFDIDSLAAQTKNFSGAELEGVVRAATTT
AMNRLVKADSAVKIDPDAVENLKVSQADFLHAIENDIKPAFGAGVEDSDH
YMSNGIIKYSDTISHILQDGQLLIKQTRLGQLVSPVTVLLEGPGGSGKTA
LAAHLAYKMSEIPFIKVVSAENMIGFSESAKCQAIRKVFDDAYRSELSCI
IVDDIERLIDYVPIGPRFSNIILQALIVLLKKKTRRGKKLLIIATTSSKD
VLSQMGMLNCFNTVIHVPTITRVEHLIKVVEDLDVFSYNDKLDIKSELEG
KQIHIAMKHLISLVEMANQHSSKASKFISLLEEQGALKPNFS
Run BLAST on NCBI

transcript from alignment at sc0000078:407353..410556-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007613 ID=TCONS_00007613|Name=TCONS_00007613|organism=Clytia hemisphaerica|type=transcript|length=3204bp|location=Sequence derived from alignment at sc0000078:407353..410556- (Clytia hemisphaerica)
CTAACATTCTTTTTCTACACATTATCAAGATTTTAGGGAAAAACTGAACT
GCATCAAACATTTTCCTAGATATTTGTCTTTAGTAGTAGTTTTATTTCTA
AAGAATCATCTTTTTTTAGTAACAAAAAACAAAAAACAAAATGGCTGCTG
GTAGGTTTATAGTAATGAGATGTCCTTCAGATGAGTTGTCACTCTCCAAT
AAATTAGTTTTCAATCCAAATGATATGGTTGAGATACTTAAAACTGAAAA
GGTTCAAGAACATAATGTCTATGCTGAAGCACAAAACCGTTATTTTGGTA
TAGCTTCACATCAAAAAGTCCCAAGGGGCAAAGTTGGTCTTAGTGGGATG
CAAAGAGAGTTTTTGGGAACATCAGAACAAACTGAAGTAGATATCAAAAT
GAATAGTGGTGCTACCCATTCAAAGTTCTGTATTTCATCATTAACCGTTG
AAGTAGATTTTCTGTTGAAGAAAAATATCACTAATGAAGCCTATGACACT
GATAAATTACAAACACAATTTCGAGATCAGTTCAATCAAATACCTTTTTA
TAACGAACAGAGACTTGCTTTCAAATTCCAAAAGCTGCCCTACATAAGTT
TGAAAGTAAAATCTTTCAAATATTTGCTTGAAGGCCAACATGGTTCCCAT
GGTTCCCATGGTATTTTGAATCAAAACACACTGATAGTGTTTGATAAAAA
TGAAGAATCTGTCATCAAATTGACAGGAAAGTCTAGAGGAAAATCAGCAA
TGCCCAACATTATTAATCCAGATTGGAATTTCTCACAAATGGGTATTGGC
GGTTTGGATAATGAATTCTCGGGAATCTTTCGGCGTGCTTTTGCATCAAG
AGTTTTCCCACCTGATTTGATTGAAGACCTTGGTATGCAGCATGTTAAGG
GAATCCTTCTCTACGGTCCACCTGGTACAGGTAAAACCTTGATGGCTCGA
CAAATCGGGAAAATGTTGAATGCTCGTGAACCCAAGATCGTTAATGGTCC
TGAAATCTTGAATAAATATGTTGGCGAGTCAGAAGCCAACATTCGTAAAT
TATTTGAAGATGCTGAAGCAGATCAGAAAAAACTTGGCAGTCATAGTGGT
TTACACATTATTATATTGGATGAGATTGATGCTATTTGTAAACAAAGAGG
AACAGTTTCTGGAAGTACTGGTGTATCAGATACTGTTGTTAATCAATTGC
TGTCAAAGGTTTGATTTTTACAGTTTCAATTTGTCCTTTTCTTTTATGTT
CCCTCATTTAAGACAATGTTTGACTGAATTACTCTTGAATCATAATAGGG
TAAATTATCTTCCTTTTGGGTTATATACTGAAAATTGTTCTAAATCTCTC
ATTCCCTTCCTTGCCAATAAGTCTTCGAAAGGTATTTCTTTGTAAAATAT
TGCACTTCAACAATGCACTGTAACTTGAAAATGATTCCTTTTATTCAGAT
TGATGGTGTAGAACAACTGAACAACATCCTGCTCATTGGGATGACAAATC
GTAAAGATTTGATTGATGATGCCTTATTACGTCCTGGTCGTTTGGAAGTT
CAAATGGAAATCAGCCTACCAAATGAAAAGGGTCGAGTTCAAATCTTGAA
TATCCATACGGCTAAACTTAAAGCCAATTACAAATTGGAAGCTGATTTTG
ACATTGATTCACTTGCGGCTCAAACTAAAAACTTCAGTGGAGCAGAATTG
GAAGGTGTTGTAAGAGCTGCAACCACAACAGCAATGAATCGATTGGTCAA
AGCGGACTCTGCTGTCAAAATTGACCCTGATGCTGTTGAGAACCTGAAAG
TCAGCCAAGCCGATTTCCTACATGCCATTGAGAATGACATCAAACCTGCT
TTCGGTGCTGGTGTTGAAGATTCTGATCATTATATGTCCAATGGTATCAT
CAAATATTCCGATACCATTTCTCACATCCTTCAAGATGGCCAACTTTTGA
TTAAGCAAACACGATTGGGTCAGCTGGTTTCACCTGTCACCGTCCTGTTG
GAGGGTCCAGGAGGGAGTGGAAAGACAGCCTTAGCTGCCCATCTTGCGTA
TAAGATGTCTGAAATTCCTTTCATCAAAGTAGTATCTGCTGAAAATATGA
TTGGATTTTCAGAAAGTGCCAAGTGCCAAGCCATCAGGAAAGTCTTTGAT
GATGCATACAGATCAGAGCTCAGTTGTATCATAGTGGATGATATTGAGAG
ATTGATTGACTATGTTCCTATTGGTCCACGTTTCTCAAATATCATCCTCC
AAGCTTTGATAGTATTGCTGAAGAAGAAGACACGCCGTGGTAAAAAGTTG
TTGATCATTGCTACCACAAGTAGCAAAGATGTTTTGAGCCAGATGGGAAT
GTTGAATTGTTTCAATACCGTCATCCATGTGCCGACCATCACCAGAGTGG
AGCATTTGATCAAAGTCGTTGAAGATCTGGATGTTTTCTCTTATAATGAC
AAGCTGGATATCAAAAGTGAGCTGGAAGGGAAACAAATCCACATCGCCAT
GAAACATCTTATTTCACTTGTTGAAATGGCTAACCAACATTCATCAAAAG
CATCCAAGTTCATTTCTTTACTTGAAGAGCAAGGAGCTCTAAAACCCAAC
TTCTCTTAAAAAACATATTTTGAATTTATTTTGGGAAGGGTATCAAGTTC
TGTTAGACTGTCTTTGAATGTAATTGCACTTAATTTTTTACTTAAAAAAT
CTGTCTACTAGAAACCTGGGAAAATTGTATTTCAACACGATTTTGTTGAA
ACAAGGATGTTAACTGCAAAGTCGATATTACATTCCGTTCACCTGAAGAA
TCCTGCATTATAATACGCATGCGTAATTTGTCGTTCTTTTAACTTTTAAA
TATGTAGTTCATCTTCGTGATAAACAAAGAGGAATGAATTTGTAGAGGTG
GACAAACCAAGCGGGTCGGGTGGACGGTGAAATTTGTCGTTTTTTATGAA
ATTTGCTTTTCTTTTTGTCTATTTCTGGTAAAATTAGGATTCTTTAGATT
AACCCCCTCTTTATTATAAACATGGTTCTGTTTTAATGAAATAATTCTAT
ATTAGTTGCTTGGGTTCGCTTAAGGTGTTTGATATCGGATATAATAATGT
TTAGTTAAGTAATTTTAATTTATTCTTTTAATGAATAATAATGTGGTAAT
TTTTATGCATCTTTATTTGATTGTTTTTTGAATGAAAAAATATTTAGTGG
CTCG

Coding sequence (CDS) from alignment at sc0000078:407353..410556-

>TCONS_00007613 ID=TCONS_00007613|Name=TCONS_00007613|organism=Clytia hemisphaerica|type=CDS|length=4458bp|location=Sequence derived from alignment at sc0000078:407353..410556- (Clytia hemisphaerica)
ATTGATGGTGTAGAACAACTGAACAACATCCTGCTCATTGGGATGACAAA
TCGTAAAGATTTGATTGATGATGCCTTATTACGTCCTGGTCGTTTGGAAG
TTCAAATGGAAATCAGCCTACCAAATGAAAAGGGTCGAGTTCAAATCTTG
AATATCCATACGGCTAAACTTAAAGCCAATTACAAATTGGAAGCTGATTT
TGACATTGATTCACTTGCGGCTCAAACTAAAAACTTCAGTGGAGCAGAAT
TGGAAGGTGTTGTAAGAGCTGCAACCACAACAGCAATGAATCGATTGGTC
AAAGCGGACTCTGCTGTCAAAATTGACCCTGATGCTGTTGAGAACCTGAA
AGTCAGCCAAGCCGATTTCCTACATGCCATTGAGAATGACATCAAACCTG
CTTTCGGTGCTGGTGTTGAAGATTCTGATCATTATATGTCCAATGGTATC
ATCAAATATTCCGATACCATTTCTCACATCCTTCAAGATGGCCAACTTTT
GATTAAGCAAACACGATTGGGTCAGCTGGTTTCACCTGTCACCGTCCTGT
TGGAGGGTCCAGGAGGGAGTGGAAAGACAGCCTTAGCTGCCCATCTTGCG
TATAAGATGTCTGAAATTCCTTTCATCAAAGTAGTATCTGCTGAAAATAT
GATTGGATTTTCAGAAAGTGCCAAGTGCCAAGCCATCAGGAAAGTCTTTG
ATGATGCATACAGATCAGAGCTCAGTTGTATCATAGTGGATGATATTGAG
AGATTGATTGACTATGTTCCTATTGGTCCACGTTTCTCAAATATCATCCT
CCAAGCTTTGATAGTATTGCTGAAGAAGAAGACACGCCGTGGTAAAAAGT
TGTTGATCATTGCTACCACAAGTAGCAAAGATGTTTTGAGCCAGATGGGA
ATGTTGAATTGTTTCAATACCGTCATCCATGTGCCGACCATCACCAGAGT
GGAGCATTTGATCAAAGTCGTTGAAGATCTGGATGTTTTCTCTTATAATG
ACAAGCTGGATATCAAAAGTGAGCTGGAAGGGAAACAAATCCACATCGCC
ATGAAACATCTTATTTCACTTGTTGAAATGGCTAACCAACATTCATCAAA
AGCATCCAAGTTCATTTCTTTACTTGAAGAGCAAGGAGCTCTAAAACCCA
ACTTCTCTTAAATGGCTGCTGGTAGGTTTATAGTAATGAGATGTCCTTCA
GATGAGTTGTCACTCTCCAATAAATTAGTTTTCAATCCAAATGATATGGT
TGAGATACTTAAAACTGAAAAGGTTCAAGAACATAATGTCTATGCTGAAG
CACAAAACCGTTATTTTGGTATAGCTTCACATCAAAAAGTCCCAAGGGGC
AAAGTTGGTCTTAGTGGGATGCAAAGAGAGTTTTTGGGAACATCAGAACA
AACTGAAGTAGATATCAAAATGAATAGTGGTGCTACCCATTCAAAGTTCT
GTATTTCATCATTAACCGTTGAAGTAGATTTTCTGTTGAAGAAAAATATC
ACTAATGAAGCCTATGACACTGATAAATTACAAACACAATTTCGAGATCA
GTTCAATCAAATACCTTTTTATAACGAACAGAGACTTGCTTTCAAATTCC
AAAAGCTGCCCTACATAAGTTTGAAAGTAAAATCTTTCAAATATTTGCTT
GAAGGCCAACATGGTTCCCATGGTTCCCATGGTATTTTGAATCAAAACAC
ACTGATAGTGTTTGATAAAAATGAAGAATCTGTCATCAAATTGACAGGAA
AGTCTAGAGGAAAATCAGCAATGCCCAACATTATTAATCCAGATTGGAAT
TTCTCACAAATGGGTATTGGCGGTTTGGATAATGAATTCTCGGGAATCTT
TCGGCGTGCTTTTGCATCAAGAGTTTTCCCACCTGATTTGATTGAAGACC
TTGGTATGCAGCATGTTAAGGGAATCCTTCTCTACGGTCCACCTGGTACA
GGTAAAACCTTGATGGCTCGACAAATCGGGAAAATGTTGAATGCTCGTGA
ACCCAAGATCGTTAATGGTCCTGAAATCTTGAATAAATATGTTGGCGAGT
CAGAAGCCAACATTCGTAAATTATTTGAAGATGCTGAAGCAGATCAGAAA
AAACTTGGCAGTCATAGTGGTTTACACATTATTATATTGGATGAGATTGA
TGCTATTTGTAAACAAAGAGGAACAGTTTCTGGAAGTACTGGTGTATCAG
ATACTGTTGTTAATCAATTGCTGTCAAAGATTGATGGTGTAGAACAACTG
AACAACATCCTGCTCATTGGGATGACAAATCGTAAAGATTTGATTGATGA
TGCCTTATTACGTCCTGGTCGTTTGGAAGTTCAAATGGAAATCAGCCTAC
CAAATGAAAAGGGTCGAGTTCAAATCTTGAATATCCATACGGCTAAACTT
AAAGCCAATTACAAATTGGAAGCTGATTTTGACATTGATTCACTTGCGGC
TCAAACTAAAAACTTCAGTGGAGCAGAATTGGAAGGTGTTGTAAGAGCTG
CAACCACAACAGCAATGAATCGATTGGTCAAAGCGGACTCTGCTGTCAAA
ATTGACCCTGATGCTGTTGAGAACCTGAAAGTCAGCCAAGCCGATTTCCT
ACATGCCATTGAGAATGACATCAAACCTGCTTTCGGTGCTGGTGTTGAAG
ATTCTGATCATTATATGTCCAATGGTATCATCAAATATTCCGATACCATT
TCTCACATCCTTCAAGATGGCCAACTTTTGATTAAGCAAACACGATTGGG
TCAGCTGGTTTCACCTGTCACCGTCCTGTTGGAGGGTCCAGGAGGGAGTG
GAAAGACAGCCTTAGCTGCCCATCTTGCGTATAAGATGTCTGAAATTCCT
TTCATCAAAGTAGTATCTGCTGAAAATATGATTGGATTTTCAGAAAGTGC
CAAGTGCCAAGCCATCAGGAAAGTCTTTGATGATGCATACAGATCAGAGC
TCAGTTGTATCATAGTGGATGATATTGAGAGATTGATTGACTATGTTCCT
ATTGGTCCACGTTTCTCAAATATCATCCTCCAAGCTTTGATAGTATTGCT
GAAGAAGAAGACACGCCGTGGTAAAAAGTTGTTGATCATTGCTACCACAA
GTAGCAAAGATGTTTTGAGCCAGATGGGAATGTTGAATTGTTTCAATACC
GTCATCCATGTGCCGACCATCACCAGAGTGGAGCATTTGATCAAAGTCGT
TGAAGATCTGGATGTTTTCTCTTATAATGACAAGCTGGATATCAAAAGTG
AGCTGGAAGGGAAACAAATCCACATCGCCATGAAACATCTTATTTCACTT
GTTGAAATGGCTAACCAACATTCATCAAAAGCATCCAAGTTCATTTCTTT
ACTTGAAGAGCAAGGAGCTCTAAAACCCAACTTCTCTTAAATGGCTGCTG
GTAGGTTTATAGTAATGAGATGTCCTTCAGATGAGTTGTCACTCTCCAAT
AAATTAGTTTTCAATCCAAATGATATGGTTGAGATACTTAAAACTGAAAA
GGTTCAAGAACATAATGTCTATGCTGAAGCACAAAACCGTTATTTTGGTA
TAGCTTCACATCAAAAAGTCCCAAGGGGCAAAGTTGGTCTTAGTGGGATG
CAAAGAGAGTTTTTGGGAACATCAGAACAAACTGAAGTAGATATCAAAAT
GAATAGTGGTGCTACCCATTCAAAGTTCTGTATTTCATCATTAACCGTTG
AAGTAGATTTTCTGTTGAAGAAAAATATCACTAATGAAGCCTATGACACT
GATAAATTACAAACACAATTTCGAGATCAGTTCAATCAAATACCTTTTTA
TAACGAACAGAGACTTGCTTTCAAATTCCAAAAGCTGCCCTACATAAGTT
TGAAAGTAAAATCTTTCAAATATTTGCTTGAAGGCCAACATGGTTCCCAT
GGTTCCCATGGTATTTTGAATCAAAACACACTGATAGTGTTTGATAAAAA
TGAAGAATCTGTCATCAAATTGACAGGAAAGTCTAGAGGAAAATCAGCAA
TGCCCAACATTATTAATCCAGATTGGAATTTCTCACAAATGGGTATTGGC
GGTTTGGATAATGAATTCTCGGGAATCTTTCGGCGTGCTTTTGCATCAAG
AGTTTTCCCACCTGATTTGATTGAAGACCTTGGTATGCAGCATGTTAAGG
GAATCCTTCTCTACGGTCCACCTGGTACAGGTAAAACCTTGATGGCTCGA
CAAATCGGGAAAATGTTGAATGCTCGTGAACCCAAGATCGTTAATGGTCC
TGAAATCTTGAATAAATATGTTGGCGAGTCAGAAGCCAACATTCGTAAAT
TATTTGAAGATGCTGAAGCAGATCAGAAAAAACTTGGCAGTCATAGTGGT
TTACACATTATTATATTGGATGAGATTGATGCTATTTGTAAACAAAGAGG
AACAGTTTCTGGAAGTACTGGTGTATCAGATACTGTTGTTAATCAATTGC
TGTCAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004298XLOC_004298Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007613-proteinTCONS_00007613-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007613-exon-sc0000078-1575043694:409349..410556TCONS_00007613-exon-sc0000078-1575043694:409349..410556Clytia hemisphaericaexon
TCONS_00007613-exon-sc0000078-1575043694:407353..409108TCONS_00007613-exon-sc0000078-1575043694:407353..409108Clytia hemisphaericaexon
TCONS_00007613-exon-sc0000078-1510915933:409349..410556TCONS_00007613-exon-sc0000078-1510915933:409349..410556Clytia hemisphaericaexon
TCONS_00007613-exon-sc0000078-1510915933:407353..409108TCONS_00007613-exon-sc0000078-1510915933:407353..409108Clytia hemisphaericaexon
TCONS_00007613-exon-sc0000078-1491911889:409349..410556TCONS_00007613-exon-sc0000078-1491911889:409349..410556Clytia hemisphaericaexon
TCONS_00007613-exon-sc0000078-1491911889:407353..409108TCONS_00007613-exon-sc0000078-1491911889:407353..409108Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000078supercontigsc0000078:407353..410556 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
31.1251	30.8793	45.0105	45.0771	35.809	26.1697	45.993	49.6145	31.7195	33.4426	26.6675	16.9127	16.7264	15.3249	20.2112	22.7256	30.5579	24.583	10.2532	17.0464	17.3066	16.6159	27.1384	26.5655	25.44	23.445	14.7795	10.7227	21.897	21.2903
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR003593AAA+_ATPase
IPR003959ATPase_AAA_core
IPR029067CDC48_domain_2-like
IPR003960ATPase_AAA_CS
IPR027417P-loop_NTPase
IPR009010Asp_de-COase-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005524ATP binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005524 ATP binding
Blast
[Close]
BLAST of TCONS_00007613 vs. Swiss-Prot (Human)
Match: NSF (Vesicle-fusing ATPase OS=Homo sapiens GN=NSF PE=1 SV=3)

HSP 1 Score: 751.51 bits (1939), Expect = 0.000e+0
Identity = 418/752 (55.59%), Postives = 546/752 (72.61%), Query Frame = 3 
Query:  141 MAAGRFIVMRCPSDELSLSNKLVFNPNDMVEILKTEKVQEHNVYAEAQNRY-FGIASHQKVPRGKVGLSGMQREFLGTSEQTEVDIKMNSGATHSKFCISSLTVEVDFLLKKNITNEAYDTDKLQTQFRDQFNQIPFYNEQRLAFKFQKLPYISLKVKSFKYL----LEGQHGSHGSH----GILNQNTLIVFDKNEESVIKLTGKSRGKSAMPNIINPDWNFSQMGIGGLDNEFSGIFRRAFASRVFPPDLIEDLGMQHVKGILLYGPPGTGKTLMARQIGKMLNAREPKIVNGPEILNKYVGESEANIRKLFEDAEADQKKLGSHSGLHIIILDEIDAICKQRXXXXXXXXXXXXXXNQLLSKIDGVEQLNNILLIGMTNRKDLIDDALLRPGRLEVQMEISLPNEKGRVQILNIHTAKLKANYKLEADFDIDSLAAQTKNFSGAELEGVVRAATTTAMNRLVKADSAVKIDPDAVENLKVSQADFLHAIENDIKPAFGAGVEDSDHYMSNGIIKYSDTISHILQDGQLLIKQTRLGQLVSPVTVLLEGPGGSGKTALAAHLAYKMSEIPFIKVVSAENMIGFSESAKCQAIRKVFDDAYRSELSCIIVDDIERLIDYVPIGPRFSNIILQALIVXXXXXXXXXXXXXIIATTSSKDVLSQMGMLNCFNTVIHVPTITRVEHLIKVVEDLDVFSYNDKLDIKSELEGKQIHIAMKHLISLVEMANQHSS--KASKFISLLEEQGALKPNF 2363
            MA       RCP+DELSL+N  V N  D       +  Q   V     +RY F + +H  V  G +  S  QR++ G S   E+++ + +    +K CI ++T+E+DFL KK+I +  YDTDK+  +F  QFN   F   Q+L F F +     L VK  + +    L+G+  +        G++  N+ + F+K E S + L GK++ K    +IINPDWNF +MGIGGLD EFS IFRRAFASRVFPP+++E +G +HVKGILLYGPPG GKTL+ARQIGKMLNAREPK+VNGPEILNKYVGESEANIRKLF DAE +Q++LG++SGLHIII DEIDAICKQRG+++GSTGV DTVVNQLLSKIDGVEQLNNIL+IGMTNR DLID+ALLRPGRLEV+MEI LP+EKGR+QIL+IHTA+++ +  L AD DI  LA +TKNFSGAELEG+VRAA +TAMNR +KA + V++D +  E+L+V++ DFL ++ENDIKPAFG   ED   Y+ NGIIK+ D ++ +L DG+LL++QT+       V+VLLEGP  SGKTALAA +A + S  PFIK+ S + MIGFSE+AKCQA++K+FDDAY+S+LSC++VDDIERL+DYVPIGPRFSN++LQAL+VLLKK   +G+KLLII TTS KDVL +M MLN F+T IHVP I   E L++ +E L  F   ++  I  +++GK++ I +K L+ L+EM+ Q     +  KF++LL E+GA   +F
Sbjct:    1 MAGRSMQAARCPTDELSLTNCAVVNEKDF------QSGQHVIVRTSPNHRYTFTLKTHPSVVPGSIAFSLPQRKWAGLSIGQEIEVSLYT-FDKAKQCIGTMTIEIDFLQKKSIDSNPYDTDKMAAEFIQQFNNQAFSVGQQLVFSFNE-KLFGLLVKDIEAMDPSILKGEPATGKRQKIEVGLVVGNSQVAFEKAENSSLNLIGKAKTKENRQSIINPDWNFEKMGIGGLDKEFSDIFRRAFASRVFPPEIVEQMGCKHVKGILLYGPPGCGKTLLARQIGKMLNAREPKVVNGPEILNKYVGESEANIRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKIDGVEQLNNILVIGMTNRPDLIDEALLRPGRLEVKMEIGLPDEKGRLQILHIHTARMRGHQLLSADVDIKELAVETKNFSGAELEGLVRAAQSTAMNRHIKASTKVEVDMEKAESLQVTRGDFLASLENDIKPAFGTNQEDYASYIMNGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEE-SNFPFIKICSPDKMIGFSETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLGNFKDKERTTIAQQVKGKKVWIGIKKLLMLIEMSLQMDPEYRVRKFLALLREEGASPLDF 743
The following BLAST results are available for this feature:
BLAST of TCONS_00007613 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NSF0.000e+055.59Vesicle-fusing ATPase OS=Homo sapiens GN=NSF PE=1 ... [more]
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