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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007588 ID=TCONS_00007588|Name=TCONS_00007588|organism=Clytia hemisphaerica|type=transcript|length=382bp
AGTTTCTCCGCCATCATGAAAACGTCACTGGTGGAATGGAATACGACGTT
AGGCTTTCTACCCGAAAGAAAATCCTCcaatttttatttcttctttcaaa
agaaaattgttaCAGATCAGAAATTGTAAATAATAGAtgcctttttattt
tttataaacttgTATATAAAATATATAGCATACTGCAAtcaacaattttt
gaatttttgcagtCTTGTTATTCAACGTCTCTTCTATCTTGGATGTTAGT
TTTGTTTCTAGCGTGGAAAACTGGCTCTTTATTAGATTGGTAACTTGATT
TTTATCCTTGATGTATTCCTGATATCTTGCCTGTAAATCTTTGATCATTG
TGTTTAGACTTTTTTCACTCTCACTTTTGACT Run BLAST on NCBI transcript from alignment at sc0000078:362543..366713+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00007588 ID=TCONS_00007588|Name=TCONS_00007588|organism=Clytia hemisphaerica|type=transcript|length=4171bp|location=Sequence derived from alignment at sc0000078:362543..366713+ (Clytia hemisphaerica)
AGTTTCTCCGCCATCATGAAAACGTAAGGAATAATTACTTCATTGGTTTG
TTATATCACCGCcttgtcacagacccggtggggtcttatcagccagtggg
ggtaaaaatgacggaccaaaactcgatgggggatttgaattccattgttt
tctagccagaaaattcagtggggattgaaaaaatagcacaaaattTAGCA
GtggggatttgcttatctgattattttcggcGGGGACaaaagagtataat
tttccactggggcaATGTTTTGGCCAatatttccagtgggaagggttacc
agtggggctgtgagaaggggttcATTATACTTGAATCACTTTTTATCCAA
TCATCGTACAACGTTTCATTGTCACTCCCACGATTATCCAACTATTGTAG
GCTCTTGTTAATTCAAACTCGAGCgggattttcattttttaccagttaca
gagagattcgaataatagaaagtattttatgagGGTCTTCTCAGGTCTTC
TCGTTGACGGAAACTGAGAATAATTTCGAATTACCttaaagagaagaaat
tttggcgaatgagccCATTCGCCAATTTTAGTgcaatttggcggaattta
ttttggcgatttaataaaatttctaaatttggcgagaattgattttggcg
aacgacccaTTTTTCGTTGAATATTTAAGCCTTAAGGTGGGNATATCTTG
AGATCATAAATTTAGTAAAActtatttgaaaaaatgtgattttaaggtgg
tagtctacccaaaaataaaaattcatcgaaaaaattgtcgaattctggtt
tttgggtgttttgagatccttaggtctttctgaacatctcctgaaaattt
cagagctatATCTTTGTCATTCAGGCCCTGCGGCCTGAAGCATTTTTATT
CTGCTGGGTGCTTGAAAAATCGCCCTAGCAACGGAAAAAAATCCCGTTGC
TAAGGACTTATTTCTTCAATCTCGGCCGAAACATAGCAATTTGATACGcc
aaaagaaagctctttttacgccctttacgagcgtcaaaatattattttcc
gtggcattacgtaatccttaaaattaaagatggtagcttCAGTAGTGTAA
CACATCAAAACAAGCTGAAAAGCAAAGATTTCTTGGCAAGATTTAGATCA
AAACTTAATCTTTTTTATGGAAATGATTCATTTAAATGAAGAATGGACTC
TACAGAAGCTATAAAGCTGCTGTACATTGGTTACtttaatgagataaaat
ttcgcggggattaaatttcgcgggtggcactattagttggcaatattttc
acgattttgtatctttatactgtcaaatcatgtatattggttgttgaaat
acacattgtttgcgcctctttgatgcaagtaaccattcaaaaagtattta
tttgacatattttgagttttgattagaaatatttcgcggatgaggccctt
ccaaatttccattgggatttaatttcgcggattttcgtggatgacaccca
aactcgcgaaatccgcgaaatccgcgaaatttaatccccgcgaaagttta
tcccattaaagtatgttgctggatttctgcgaaaaacatttaagttgtcg
gcattttgttttgagcataGACAGTGTGCTTTTGGTGGCTCACATAATGT
TTTGTAGTGGATTTAAATGTaactgagatatttccaagcacaacaggatg
taacagagatagaaatgtgcattataatgaactggaccTAACTTCTGGAG
ACACCCATTCTCATCTGACACCCGCCATTCATAACCGCCTAGGCGGTAAC
CGAATGTGCCTTTGGTCAAGCCAgctcattgtcaattcaagtctatGTGA
ATAATAAAATATGCACTAGAAAAGTTTCCATGCCTTCAGAGAGTCATGCT
GGTCTTTCAATGAACATTTTGTCACACTTATGTGCtattttcacccaaat
ttgatgttattGCAAGATTACCGCAAAGTTTGCTATGTTTACATAACTTT
AGCgcaacatgtttttgttgatttttggataatttatcaatttttgtgaa
taaagaaacaggagaagtatgctattgtaaccatgctcgccctacgatta
aaaaaattacgaggtatgcatgctcataatctcatatatcgtgcattttt
aatgagctcttttgttgataggttaaatcttattggctaactcaAGTGtc
ggaaataagatgagacgagattcattgtttctgacaaaatatttggacta
aaaaagggcctgtaaattttgcaatccttcatcaaatggcaagatttttc
gatcaacattttcttcaaggtgaactctattgcttaatactttcctccaa
aattcttgGGTTGGGTCTGAAATTGTGTGTGCTTATAAAGAACTTTTTAT
TTTCTGGCTGGAGAAAATATCTTTTCAAAAcaaaatttaatggatgacaa
aattgaacgcaaacttatttcgtggagctaaattttattttattctcgta
tattagaaggctagaaatcttcgatgctgttagtaagaatgttcagagca
aacttgagttctactaaaaagtcgtatttcatcgggcgagcctagaattt
cttttgatttattacataaaagaaatcaaaagactttaacgaccaattac
cgacaaattcatctcctgtctttctttatacttCTATGCTTTAACTCATG
AAACCAGACTAGTTTGATGAGTATTCAGTgaagaagttttttgaaaagag
ctttccagcTTAAAATAATGATATCCATTTTTGTctgtttctttgatttt
ctcaaaaacgcttttccgggggtttgcaaacACCTTGTCAGAAAAATCTC
AGGATGGGAAAGTGCTAGatagagacttgaaattttcagggaagttGCCT
GGCATGATTGTGCATAGAATGAGTGaattaaaaagtttcaaaattggttt
cctgattttttatttcaaaaaatcggatttttcagtttcttaccccctgg
aaaaacaCATTAAATACTCTTTTCACTCATTCTGTAATTTTTTCATATac
tgaactttaaaaaaaatttgtaggtCAACTCAGTGTTTCAGATAACCTGA
CACAagcaaaatattgcattttacccccgtctgtggttatttttagaatt
tttttctaattttagaaaccttaatagTTGATTatcatttcctgaaaatt
tcatcaaaaaatatttagcagttgttgagttattgcaaaatctgtatttt
tttgactttttaaatcttTGGGTAGACTCCCACCTTAAAAGGATGAAAAA
AGGggtttttaggagaaatagCAATTTAAAGCAATTTAAATTTAGCGATA
ATTAATTTCGGCGAATGGctcataaatttaaatttggtgggaaaaagttt
taacgaatttttgaggcaattcgccaaaacttcttctcttaaggtatagA
GAGAtacgaataatagaagttcgaatagcCGAGAGTCTACTGTAGTTCTC
CTTTTGAGTTTAAGATCAACTCAGGAAGCTCTTAATCGTGTTATCCTCTA
GAttaataattaaaaataataaaataacatGTCATTGGGATGGTAGAAGC
CCTATAATCCCCGTGAAATGATCTGGGAAAATACCGTATCCTTCACCCCC
TggcttcattttccttttttaaaacgataattatttcatatttcatCACA
TTATTACATTTTACTTTTCGGCTAATGCCATTATCAGTATACACAAGAAT
GGTAAAAAATCATATCAGCGCttttattttttaggttttcattttattcg
ttGTTTTTTTAGGTCACTGGTGGAATGGAATACGACGTTAGGCTTTCTAC
CCGAAAGAAAATCCTCcaatttttatttcttctttcaaaagaaaattgtt
aCAGATCAGAAATTGTAAATAATAGAtgcctttttattttttataaactt
gTATATAAAATATATAGCATACTGCAAtcaacaatttttgaatttttgca
gtCTTGTTATTCAACGTCTCTTCTATCTTGGATGTTAGTTTTGTTTCTAG
CGTGGAAAACTGGCTCTTTATTAGATTGGTAACTTGATTTTTATCCTTGA
TGTATTCCTGATATCTTGCCTGTAAATCTTTGATCATTGTGTTTAGACTT
TTTTCACTCTCACTTTTGACT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00007588-exon-sc0000078-1491911889:362543..362565 | TCONS_00007588-exon-sc0000078-1491911889:362543..362565 | Clytia hemisphaerica | exon |
| TCONS_00007588-exon-sc0000078-1510915933:362543..362565 | TCONS_00007588-exon-sc0000078-1510915933:362543..362565 | Clytia hemisphaerica | exon |
| TCONS_00007588-exon-sc0000078-1575043694:362543..362565 | TCONS_00007588-exon-sc0000078-1575043694:362543..362565 | Clytia hemisphaerica | exon |
| TCONS_00007588-exon-sc0000078-1491911889:366355..366713 | TCONS_00007588-exon-sc0000078-1491911889:366355..366713 | Clytia hemisphaerica | exon |
| TCONS_00007588-exon-sc0000078-1510915933:366355..366713 | TCONS_00007588-exon-sc0000078-1510915933:366355..366713 | Clytia hemisphaerica | exon |
| TCONS_00007588-exon-sc0000078-1575043694:366355..366713 | TCONS_00007588-exon-sc0000078-1575043694:366355..366713 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000078 | supercontig | sc0000078:362543..366713 + |
Blast
The following BLAST results are available for this feature:
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