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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007344 ID=TCONS_00007344|Name=TCONS_00007344|organism=Clytia hemisphaerica|type=transcript|length=1575bp
CTCTCCTACTTGTGCCATGTGGTTTTGAGAGTCCATTCTCTTCAGCAAGG
ACAGTTGAAGCCTGACCATCGACAAGACAACAATTAATCTTCATATTCAT
TTAACTATGAGATTGGCATAATAATCCAGATCAGCTAAGATAAAGTTTGG
GATTATTTGGACACTATGTCTTGATTGTCAAAATATATATCTAATCTTTT
TATAACATCATGTCTTCACCTATCGTTTGATCTCATCCAACCCACACTAG
CGTTTTCCGCTTTCTCACATCCAATTGAATTGCAaatgggcctaagtcca
tgcatcctaaaaagtttaatgagtttttctttattttactgagattgtct
tttctctttatcttgAGTGTAAATCTAAGTGTAAGTGGCTTTATTTTGGA
ATGTCATATGTGCTGATATGTGCTGGTTTTGAACTCTCacacgtttttca
aaattcatgtttaCAAACTCAGTAAAGACATGCTCGCCCTTGCAAAAAAG
ACCTAAGTCCACTCTGCTAAGTTCCACCTGTTACGTACAAAAATATCTAC
TTTCCAAACGAATGCCTTTTCATTGGAAAAACAACTTATAGCTAATGGCT
TTCAGAAAACAGTTAATTCAAAGCTTTaacatcaaaaatggtttcagaat
caaggaaaaactttaattgcaattttctcaaaatgaccaaaatggactta
ggccccttttgaattaggGTAGCTATGGTTTCTTTTTATCAACAGTCTTG
tatcttattttcaaataaagtagCTACATTTGCAGGTAGCTATATATAGT
AGTAAGTTTTGGTAATACCTTTATCTTGGTGGAATCAAATATTTTATGAT
TGTgatattttagatttattttcaaaaaaaatgccaCTATCCAGTGAAGA
TTGGGTTAAAGCACTTTCCCATATTTCTGAAGCAGAACAGTTGAAGGTAA
CAGTTAAAGGTAGTTTCTTTGGAAGTGTTTTTGTTGGTGGCTTTTGTATG
GTATTAAGCTTACTACTTGGACCTGAAGTTGGACTTTTAATTGGTGGAAT
AGTAGGGGGATGTATCTCTTTCTTTAAATTTCGTGGAACTTACAAACCTG
TTTCGTCTGTACTGAAAGAATTAACACCAGAGCAGAGAGAAGCTCTATTC
AAAGATTTACAAGAAATACGATCAAAAGTCACTGCAGTGGATTACATTGA
GCTGATTATGTTACTGCAAGGTGGAGGAGGACTTGtcctcaagaaaaaag
ttttggatgtcGTTGTTGGATACTTGAAACAAAAACTGAAATTGACAATT
ACTTAATAATAGTGTACGTAAATAGACTCAATGCTTGAATATTCTGGTAG
ACCTTTCAAATGTCATATTTTGTATTCACTCTCAAAACTCCAATGCTAGT
CTTTATCAAAGAATGATTGAAAACGCCTTTACTTTTACTTTATTAAGATC
ATCTCAAATTTCAATGCACATTGAAATTACTGTGATGcccaaaaaaagaa
ataattttatttttaattataatTAATATTGATATAAACATGTAACGGat
gcatttaattttttttcactgtaAT Run BLAST on NCBI protein sequence of TCONS_00007344-protein >TCONS_00007344-protein ID=TCONS_00007344-protein|Name=TCONS_00007344-protein|organism=Clytia hemisphaerica|type=polypeptide|length=141bp
MPLSSEDWVKALSHISEAEQLKVTVKGSFFGSVFVGGFCMVLSLLLGPEV
GLLIGGIVGGCISFFKFRGTYKPVSSVLKELTPEQREALFKDLQEIRSKV
TAVDYIELIMLLQGGGGLVLKKKVLDVVVGYLKQKLKLTIT Run BLAST on NCBI transcript from alignment at sc0000075:306105..307679 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00007344 ID=TCONS_00007344|Name=TCONS_00007344|organism=Clytia hemisphaerica|type=transcript|length=1575bp|location=Sequence derived from alignment at sc0000075:306105..307679 (Clytia hemisphaerica)
ATtacagtgaaaaaaaattaaatgcatCCGTTACATGTTTATATCAATAT
TAattataattaaaaataaaattatttctttttttgggCATCACAGTAAT
TTCAATGTGCATTGAAATTTGAGATGATCTTAATAAAGTAAAAGTAAAGG
CGTTTTCAATCATTCTTTGATAAAGACTAGCATTGGAGTTTTGAGAGTGA
ATACAAAATATGACATTTGAAAGGTCTACCAGAATATTCAAGCATTGAGT
CTATTTACGTACACTATTATTAAGTAATTGTCAATTTCAGTTTTTGTTTC
AAGTATCCAACAACgacatccaaaacttttttcttgaggaCAAGTCCTCC
TCCACCTTGCAGTAACATAATCAGCTCAATGTAATCCACTGCAGTGACTT
TTGATCGTATTTCTTGTAAATCTTTGAATAGAGCTTCTCTCTGCTCTGGT
GTTAATTCTTTCAGTACAGACGAAACAGGTTTGTAAGTTCCACGAAATTT
AAAGAAAGAGATACATCCCCCTACTATTCCACCAATTAAAAGTCCAACTT
CAGGTCCAAGTAGTAAGCTTAATACCATACAAAAGCCACCAACAAAAACA
CTTCCAAAGAAACTACCTTTAACTGTTACCTTCAACTGTTCTGCTTCAGA
AATATGGGAAAGTGCTTTAACCCAATCTTCACTGGATAGtggcatttttt
ttgaaaataaatctaaaatatcACAATCATAAAATATTTGATTCCACCAA
GATAAAGGTATTACCAAAACTTACTACTATATATAGCTACCTGCAAATGT
AGctactttatttgaaaataagataCAAGACTGTTGATAAAAAGAAACCA
TAGCTACcctaattcaaaaggggcctaagtccattttggtcattttgaga
aaattgcaattaaagtttttccttgattctgaaaccatttttgatgttAA
AGCTTTGAATTAACTGTTTTCTGAAAGCCATTAGCTATAAGTTGTTTTTC
CAATGAAAAGGCATTCGTTTGGAAAGTAGATATTTTTGTACGTAACAGGT
GGAACTTAGCAGAGTGGACTTAGGTCTTTTTTGCAAGGGCGAGCATGTCT
TTACTGAGTTTGtaaacatgaattttgaaaaacgtgtGAGAGTTCAAAAC
CAGCACATATCAGCACATATGACATTCCAAAATAAAGCCACTTACACTTA
GATTTACACTcaagataaagagaaaagacaatctcagtaaaataaagaaa
aactcattaaactttttaggatgcatggacttaggcccattTGCAATTCA
ATTGGATGTGAGAAAGCGGAAAACGCTAGTGTGGGTTGGATGAGATCAAA
CGATAGGTGAAGACATGATGTTATAAAAAGATTAGATATATATTTTGACA
ATCAAGACATAGTGTCCAAATAATCCCAAACTTTATCTTAGCTGATCTGG
ATTATTATGCCAATCTCATAGTTAAATGAATATGAAGATTAATTGTTGTC
TTGTCGATGGTCAGGCTTCAACTGTCCTTGCTGAAGAGAATGGACTCTCA
AAACCACATGGCACAAGTAGGAGAG Coding sequence (CDS) from alignment at sc0000075:306105..307679 >TCONS_00007344 ID=TCONS_00007344|Name=TCONS_00007344|organism=Clytia hemisphaerica|type=CDS|length=426bp|location=Sequence derived from alignment at sc0000075:306105..307679 (Clytia hemisphaerica)
TTAAGTAATTGTCAATTTCAGTTTTTGTTTCAAGTATCCAACAACgacat
ccaaaacttttttcttgaggaCAAGTCCTCCTCCACCTTGCAGTAACATA
ATCAGCTCAATGTAATCCACTGCAGTGACTTTTGATCGTATTTCTTGTAA
ATCTTTGAATAGAGCTTCTCTCTGCTCTGGTGTTAATTCTTTCAGTACAG
ACGAAACAGGTTTGTAAGTTCCACGAAATTTAAAGAAAGAGATACATCCC
CCTACTATTCCACCAATTAAAAGTCCAACTTCAGGTCCAAGTAGTAAGCT
TAATACCATACAAAAGCCACCAACAAAAACACTTCCAAAGAAACTACCTT
TAACTGTTACCTTCAACTGTTCTGCTTCAGAAATATGGGAAAGTGCTTTA
ACCCAATCTTCACTGGATAGtggcat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00007344-exon-sc0000075-1491911889:306105..307679 | TCONS_00007344-exon-sc0000075-1491911889:306105..307679 | Clytia hemisphaerica | exon |
| TCONS_00007344-exon-sc0000075-1510915933:306105..307679 | TCONS_00007344-exon-sc0000075-1510915933:306105..307679 | Clytia hemisphaerica | exon |
| TCONS_00007344-exon-sc0000075-1575043694:306105..307679 | TCONS_00007344-exon-sc0000075-1575043694:306105..307679 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000075 | supercontig | sc0000075:306105..307679 . |
Blast
The following BLAST results are available for this feature:
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