TCONS_00007112 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007112
Unique NameTCONS_00007112
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length355

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007112 ID=TCONS_00007112|Name=TCONS_00007112|organism=Clytia hemisphaerica|type=transcript|length=355bp
TGATTATATTGTGGTAGCGATTAAAAAGGTTTTAACAACAATTACTGGTT
TTTTGTTTATAATGTTTTAAATGTAGAGGTGTCACCTTAtttcataataa
aaataattcaatatctCTTAGTCTAGATAGACCTCTAAAGGAGCaagaat
ccgttagtggatgccagtaACCTAGATATCTCCCTGAAAACGACCAGTAT
TTGGAGTttggcattttcatttcatGAACAGGGCATGGACAGTTCTGGTC
AAGGTATTTTacataaaataattatattaaaatgacgtaatgttatattt
ttatACCTGTTAAATTAATTAATGAGGTTTTAATATGAAGaatggaaatt
tgaaa
Run BLAST on NCBI

transcript from alignment at sc0000073:393484..393838

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007112 ID=TCONS_00007112|Name=TCONS_00007112|organism=Clytia hemisphaerica|type=transcript|length=355bp|location=Sequence derived from alignment at sc0000073:393484..393838 (Clytia hemisphaerica)
tttcaaatttccattCTTCATATTAAAACCTCATTAATTAATTTAACAGG
TataaaaatataacattacgtcattttaatataattattttatgtAAAAT
ACCTTGACCAGAACTGTCCATGCCCTGTTCatgaaatgaaaatgccaaAC
TCCAAATACTGGTCGTTTTCAGGGAGATATCTAGGTtactggcatccact
aacggattcttGCTCCTTTAGAGGTCTATCTAGACTAAGagatattgaat
tatttttattatgaaaTAAGGTGACACCTCTACATTTAAAACATTATAAA
CAAAAAACCAGTAATTGTTGTTAAAACCTTTTTAATCGCTACCACAATAT
AATCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003980XLOC_003980Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007112-exon-sc0000073-1491911889:393484..393838TCONS_00007112-exon-sc0000073-1491911889:393484..393838Clytia hemisphaericaexon
TCONS_00007112-exon-sc0000073-1510915933:393484..393838TCONS_00007112-exon-sc0000073-1510915933:393484..393838Clytia hemisphaericaexon
TCONS_00007112-exon-sc0000073-1575043694:393484..393838TCONS_00007112-exon-sc0000073-1575043694:393484..393838Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000073supercontigsc0000073:393484..393838 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.269177	8.84781	7.2506	4.9986	4.9721	1.63816	1.01456	0.24619	1.29468	0	0.167834	0	0	0.547253	0	0.258312	0.270305	0.234944	0.343793	0	0	4.43524	3.95834	0	0.711197	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00007112 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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