TCONS_00007110 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007110
Unique NameTCONS_00007110
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length322

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007110 ID=TCONS_00007110|Name=TCONS_00007110|organism=Clytia hemisphaerica|type=transcript|length=322bp
GAGGAAGGAATTGGGAGCTAATCTAGGAGCAAAGAACAGGGAAACAGAAA
AACAACGGAGACAGAAATAGTTTAACTTGGATGAGTGAATAATCACAGAT
TTGATATTTACGAAAAAAGATAACAAGAGATAAAATAAGTGTTGATGCAC
GAAAAATACAACCCTACATATAATTGTGTCCAGGCTCTAAGGTCAAAAAG
TGGGCCCAAAGGTGGGACGCAGAGTGTTAAAATTTCATTCATGGCGTACT
CAAGACAGAATTAAACCTTCAATGAGAAAGTAATGCAAATTTTACATCAA
GTCCAAAGATCGACGCTTGTGT
Run BLAST on NCBI

transcript from alignment at sc0000073:361415..361736

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007110 ID=TCONS_00007110|Name=TCONS_00007110|organism=Clytia hemisphaerica|type=transcript|length=322bp|location=Sequence derived from alignment at sc0000073:361415..361736 (Clytia hemisphaerica)
ACACAAGCGTCGATCTTTGGACTTGATGTAAAATTTGCATTACTTTCTCA
TTGAAGGTTTAATTCTGTCTTGAGTACGCCATGAATGAAATTTTAACACT
CTGCGTCCCACCTTTGGGCCCACTTTTTGACCTTAGAGCCTGGACACAAT
TATATGTAGGGTTGTATTTTTCGTGCATCAACACTTATTTTATCTCTTGT
TATCTTTTTTCGTAAATATCAAATCTGTGATTATTCACTCATCCAAGTTA
AACTATTTCTGTCTCCGTTGTTTTTCTGTTTCCCTGTTCTTTGCTCCTAG
ATTAGCTCCCAATTCCTTCCTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003978XLOC_003978Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007110-exon-sc0000073-1491911889:361415..361736TCONS_00007110-exon-sc0000073-1491911889:361415..361736Clytia hemisphaericaexon
TCONS_00007110-exon-sc0000073-1510915933:361415..361736TCONS_00007110-exon-sc0000073-1510915933:361415..361736Clytia hemisphaericaexon
TCONS_00007110-exon-sc0000073-1575043694:361415..361736TCONS_00007110-exon-sc0000073-1575043694:361415..361736Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000073supercontigsc0000073:361415..361736 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.25573	0.306134	0.710902	1.73877	4.65692	5.35267	2.42166	0.377855	0.793636	2.29377	1.59028	1.46354	1.87908	3.68606	1.24783	1.33911	0.707005	2.65708	0	0.698423	1.21411	3.99736	0.719899	1.63623	0.337056	1.50407	0	1.37821	3.13597	0.355006
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00007110 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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