TCONS_00007038 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00007038
Unique Name	TCONS_00007038
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	3660

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000073:349204..359981+

transcript sequence

>TCONS_00007038 ID=TCONS_00007038|Name=TCONS_00007038|organism=Clytia hemisphaerica|type=transcript|length=3660bp
CTTACAAGCGTATGTTTGTGCCGTACAACTTGATAGCAACCACGTAGCTG
CTTGGACAGATCTTGGTGTTTTGTATGAGACAGCTGGTAGATTTGAAGAT
TCCATGATATGTTACAAAAATGCACTAAAAGCTTGTGGCACCTCAAACAT
TGGGCTTGAAACAAGAATGAGAATTTTAAAAGAGAAGATGGCAAGTCCTA
TGGTTGCAGAAGTGAACAAGAATCTTCCAGGTATTGAAGCAGCTTGGAAA
CTTCCTATTCCAGCTGAACTCACCGCCAGAACAGTTGTCCTTGTGCAACA
GgCAAGACTAAATCAACAGATGGTATTGCAAGGGAAGAATggagaaaatt
tacaaaagacCGAAGAAAATATAAACCTTTCAGAAATCAATTCTCAAAAT
GCACTAAAAGATAATTCTGATGTACCTATGACTGATATACAGCTAGATAA
ACAGATTCTTGATACACTTGATAACACAACTAACCCAACCATGGATTTGA
ATATCGATAGCAATATTTTTGAATCGGTAGCACCAGTAGCAGATGTAGAT
ATGTCTTTACCAACATCAGGAATGAATTTAGATCATCAACTAGAAAGCAC
TGGTATCGATGAAACTCACCCAGAAACTAGTGGTTTATCATGGAACCATA
ACTCCCTTTCAATAAACGACGAATCAGAATTTATGAATCCTTTAATGAAA
GCAGACACTAACTTGAATCAAATGAACACTTCAGAATCTAATATACAAAC
ACCTCTTACAGTACCATCTGATAGCAAACTCATGTCTACTAATAATGATT
TGTCAGAAGTCATTACACCATCCACATCGTTAGGATTACCTTTAGTCTCA
CCCGTTGAGAACATATCAAAAGATGCTCCTCTTGCAGAAACTTCTTCACT
AGAACTCCCTGAGAAAGAAGAACCAAAACCCACTTCACCTGTAGACAGCA
AAACTGAACCAGAAGTTCCTTCAGTTTTGAGTCCAGTAGAGCAAGCAACG
AAACCTGACCAACCTGCAAAATCGCCAGCACCAATCCCTCCTCTTACAAG
CGGTTATGAATTGCCAAAGATTTGTTTacttttaaatgaaaatgaagtcC
CAAGTTTACCGCCTAGGCCTCCTCAAGTGCCTGTAACACAGTTATATCCT
CCTACACCTAGCATAACTGTTCAAGACAGACGTGAAGCCATGTCACCTGC
ACTTCGGAACTTCTGCTATGATAAACGAAACCCTGTAACAGTAGTTAAAG
GCTTGTGCAAGGCACTCAAGCTAGatcTTAGCTTGTTTACAACTCGACGT
TTGGTGGAACAAAATCCAGACCATTCTATAGAAATCAGACACCAAAGACA
ACAAAGAACTGATGAAAATCTGGATGAAGAAGGCAAAATCACAGTATGGC
GATGTCGTAGCAGCAAATCGAAAATGACCATCGCAAAATATGCACAATAT
CAAGCCAGTACATACCAAGACTCCTTACAGTCTGAAGATTCTGAAGCAGA
GAgggagaagaaagaaaaagagaagaaGCTAGAAGAACAAGGTCTTCCAA
AgaaaaagaagaaattcaagATGATCAAGTTTGGGACAAATGTTGATTTA
TCAGACACAAAGAAATGGAAATCCCAGCTTGCAGAGTTGACAAAGCTTCC
ATTATTCTGCAAGGTGGTGTGTGGCAGTAACATGCTATGCCACGTCGGCC
ATAACATCCTCGGTATGAACACTGTTCAACTTTACATGAAGATCCCTGGA
TGTCGAACTCCAGgccATCAAGAAAATAACTGTTTTGCCTCGATCAACAT
AAACATTGGGCCAGGCGATTGTGAATGGTTTTGTGTTGATAATGATTATT
GGGGAGTAATACACGAGCTGTGTGAAAAACATGGTGTCAACTTCTTATCA
gGTTCTTGGTGGCCCATCCTTACAGAGTTGTATGATGAGGGTGTTCCTGT
CCACAGATTCATTCAAAAACCAGGAGACTTAGTTTGGGTGAACTCTGGAA
ATGTCCATTGGGTGCAAGCCATTGGCTGGTGTAATAATATTGCTTGGAAT
GTTGGTCCACTTATACCAAACCAATTCAAATTAGCTGTTGAAAGATATGA
GTGGAATAAACTGCAAGATTACAAATCAATTGTTCCAATGATAAATCTAT
CTTGGAGCTTGGCAAGGAATATTCGAATACCTGAAGGCCAATTAGGTGAA
CATGTGAAAGTTTGTTTGGAGCGCTCACTACGCTATTGTGTCCGGACATG
TGAAATTCTTAAGGATATGAATATTGAAGTACAATGGCATGGTCGTGAGA
AGAATGAAGCTGCACATTATTGTTCAACATGTGAAGTTGAAGTGTTCAAT
ATTTTGTTTGTCAAAGAAATGAACAAGAAGTTGATGGTTCATTGTCAAGA
CTGTGCACGAAAAACAAGCGTCAGTTTGGAAGGATTCATTGTTCTTAATC
AGTATTCCATGGAAGAATTGGAGCAAGTTTATAACGCATTTTGTGTTAAC
ATGGTGAATGCTGCCAAAGGATCAACCAGCACAACTGCAACATCTACAGC
TGCTTCAAGTCAGCAACAACCACCACAAGCACCGCCCATCACAACAAGTG
CTTCTTCATCTTCTGCACCAACGCCCAACCCTCCACCCCAACCTGTTCCA
CCGCCACCAGTGGAAGAGAAAACGTGAATGGGCGCCCTAACGTTCTCAAG
TATGGTATTGTAATGTTGATAGTGTTATTTATTGGACTCCAAAACTAAAT
GCAATCTTtcctttattatttcatttagCTTGAAATTGTAAAAGCTTTTT
GATGGATATCCTATTGATATTAATGACGATGACTTTAGCAGTTGAAGACG
TATTTGAAGCTATTTCATTTTGCCATTTGTGCTTGAGTCTCCATTTGCAC
TTGCCAGAAGGCAAACACATTGAATGgcatttttttggcttttttttatT
GTGAGAGTCTTCGTCTATTGTCCTATATGTCAAGCAAATTTGCTggcaat
tttatcaaattatagTATGATAATGAATAGTGTAATGTAATTTAGTGTAT
AATATTGAGTATGGTAATAATTATGatgtatattacatattgtcaCTGGA
ATCATGAATGGTCTGAATCTATATGGTAGTAGACACAGATAGATTTCGCA
TATTTCTCACCAATTATCAGTTTGTTCAGTAATTTTGCTGTCTTCAATAT
TaccccttttcaaaaattttttatcaataatctTTATTGCATAGTTAGTG
AAATTATCATGATTTTTTTGTAGTTGTGTTTTTTTAggactttttacttt
ttactatTACTATTATGTGTTCTATTTGATCTGTCCTTTGTctaattttt
atgtttgaaattttatgTCCTTGTCTGATTTGTTTTCTAAattaaaataa
accagctgcgctggaagctctaGCCGTAAGCTGAGAAAGATGCAAGGATT
AGATAAAATAAACAGGTCGGAAATGGTATGCAAAAAGGGGATTCATAATA
TGCATAACTGTTATATTCTTCGGACATACCCCAAAATTTTCTCCCTATTG
CGCGTCATATGAGTGTCACGGGGGCCAAAATTAGCacataaagaaaaaaa
acgaacTAATTAACTTTAGGGGTGATTTTCCTAAGGGTAAAATTTGTTTG
TGCGAATGGC

Run BLAST on NCBI

transcript from alignment at sc0000073:349204..359981+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00007038 ID=TCONS_00007038|Name=TCONS_00007038|organism=Clytia hemisphaerica|type=transcript|length=10778bp|location=Sequence derived from alignment at sc0000073:349204..359981+ (Clytia hemisphaerica)
CTTACAAGCGTATGTTTGTGCCGTACAACTTGATAGCAACCACGTAGCTG
CTTGGACAGATCTTGGTGTTTTGTATGAGACAGCTGGTAGATTTGAGTGA
GTCAGGGTgtatatttttatgattttgggtgttttttaaagttttggaaT
TTCAGAAAGTTTATTCCAGAGAGTGCGGCTATTCATGGATGGCTGTTTGG
CAGCCTATGGCCGTATATCTGGCTGATCTAACTCTGACACCTCTGCTCTC
AGTTACTTATCAAATAACCTAAGCTACTCATTTCTTTTGTTGAGACCAGG
GATTGATTGCTAGGTGAATACTCTGTCAAGCTACCTGGCACCTTGAAGTA
ACCTTTTTCTCTTAATATTTTCAGAGATTCCATGATATGTTACAAAAATG
CACTAAAAGCTTGTGGTGAGTCTTTGTATCTAAGAAGGGACTATTTTTGA
TATGGAAGGACCTATTTATTGAACAACCTGTATATACAAAATTCCTTTCA
TCAGATTACTATCCAAGAgattaaatcaaaaattgttgCCTTGCTAAATT
TAGTCACACACAATTGATCCAatgaattttcatttctttttccaAAGGCA
CCTCAAACATTGGGCTTGAAACAAGAATGAGAATTTTAAAAGAGAAGATG
GCAAGTCCTATGGTTGCAGAAGTGAACAAGAAGTGAGCTCCATAATGTTA
TTATTTGCTTTGGCTTCCATTTAGTCAGGTCCTTTTCATTCAACTCAATC
CATTTAAACATAACATCACTAGCTGTAACTTATAAAAACCTTGACTTATG
CTTTCAAACTTTTACTTGCTTCAACCTCTCAACtgggaaaaaattggaaa
ttttcaacatttcatcattttttatatGACTTACTTGATACCCAAAATCA
CCTCGTATCCATCCTTTTTTGTTACCTATATACCCAGTATTTATTTATCG
TCTCTGTTTTTATCAATATCCATGCCTCCATTTTCATCcattgttatttt
tgatttttttcttcattcagTCTTCCAGGTATTGAAGCAGCTTGGAAACT
TCCTATTCCAGCTGAACTCACCGCCAGAACAGTTGTCCTTGTGCAACAGG
TATTGTGATTTACTTTTAGTTCACAGCGAGATGATATTTACATTGGTAAC
CTAATACaagatatttaaaaagaaagtatAAAAGGTTATGTATTAAATCA
TGATTTAAAAGGAAACTTGAAGGATTTTGATACAAGTTTCTTTTTGAACC
CACCATAACTTACAGTACAAATTACGGGATTTTTTATATATTCTGCTTTC
ATCCCAATCAATccttatttaaaattttaatttcaggCAAGACTAAATCA
ACAGATGGTATTGCAAGGGAAGAATggagaaaatttacaaaagacCGAAG
AAAATATAAACCTTTCAGAAATCAATTCTCAAAATGCACTAAAAGATAAT
TCTGATGTACCTATGACTGATATACAGCTAGATAAACAGATTCTTGATAC
ACTTGATAACACAACTAACCCAACCATGGATTTGAATATCGATAGCAATA
TTTTTGAATCGGTAGCACCAGTAGCAGATGTAGATATGTCTTTACCAACA
TCAGGAATGAATTTAGATCATCAACTAGAAAGCACTGGTATCGATGAAAC
TCACCCAGAAACTAGTGGTTTATCATGGAACCATAACTCCCTTTCAATAA
ACGACGAATCAGAATTTATGAATCCTTTAATGAAAGCAGACACTAACTTG
AATCAAATGAACACTTCAGAATCTAATATACAAACACCTCTTACAGTACC
ATCTGATAGCAAACTCATGTCTACTAATAATGATTTGTCAGAAGTCATTA
CACCATCCACATCGTTAGGATTACCTTTAGTCTCACCCGTTGAGAACATA
TCAAAAGATGCTCCTCTTGCAGAAACTTCTTCACTAGAACTCCCTGAGAA
AGAAGAACCAAAACCCACTTCACCTGTAGACAGCAAAACTGAACCAGAAG
TTCCTTCAGTTTTGAGTCCAGTAGAGCAAGCAACGAAACCTGACCAACCT
GCAAAATCGCCAGCACCAATCCCTCCTCTTACAAGCGGTTATGAATTGCC
AAAGATTTGTTTacttttaaatgaaaatgaagtcCCAAGTTTACCGCCTA
GGCCTCCTCAAGTGCCTGTAACACAGTTATATCCTCCTACACCTAGCATA
ACTGTAAGTCATTTATTTTTGCTCTATTCTTATTTActaaattattttgt
ttcatCTATATAGTATAGTAAATTGTTCTACAACTTTTCAATTCATTaat
ttcactttcaaaatgttgtTTATTCTAATTTTTAAGGTTCAAGACAGACG
TGAAGCCATGTCACCTGCACTTCGGAACTTCTGCTATGATAAACGAAACC
CTGTAACAGTAGTTAAAGGCTTGTGCAAGGCACTCAAGCTAGGTAAGATT
GTATTCAAacaattgtttattttttaatgttctcAACTCGctctttgaaa
taaaattagCAGAATTATAAAgtattattaaattttttttttgtttcaga
tcTTAGCTTGTTTACAACTCGACGTTTGGTGGAACAAAATCCAGACCATT
CTATAGAAATCAGACACCAAGTAAGTATGCATATATTTTTATATCCACAT
GAATATCTAATTAACTTCTTTTTTCAAGTGACAATTCAACATTTCTTGTT
TAAAAACCTtgttaaatttattttcctttctATAGAGACAACAAAGAACT
GATGAAAATCTGGATGAAGAAGGCAAAATCACAGTATGGCGATGTCGTAG
CAGCAAATCGAAAATGACCATCGCAAAATATGCACAATATCAAGCCAGTA
CATACCAAGACTCCTTACAGGTTTGAATGAATCCCATCAGTTGCAGTTGA
TTATACTTGTCAATATTCTTAAAATACCAGACATTATTTCAATGATGAta
aatcttcaaaaatggtaAAACCTTAATATCGAATGTAATCTCAACAGGTT
TCCAATGtctctctttttttatttaCCAGTCTGAAGATTCTGAAGCAGAG
AgggagaagaaagaaaaagagaagaaGCTAGAAGAACAAGGTCTTCCAAA
GTAAGTCAACAGTCCCATTTATGTTATAAATTCCTCTATCAATAGTGtgt
gtcattatttttctcagggatttttctaataGAAGTTCTAGATTGTGTAT
GTAATTCCATCCTGATATTCAATTATCTCTTATCCAGTTAATTTATTGTT
CAGATTCAGATTTTACAACATTTTACATCAAACTATCCATTCAATTTACA
TTAGGCTAACCTTTAACactcaaaaatcaaattatttttgtaggaaaaag
aagaaattcaagATGATCAAGTTTGGGACAAATGTTGATTTATCAGACAC
AAAGAAGTATGTGttcgacaattttttttgaaaaatattgagcaaaaatg
aaattgtcttGAGAATTTTATTACTGCaactttgaattaaaaaaaaaaag
cttaaaCTTTTTAAATCATTACATCTGGGACAAGGACTTCTGACACAGCT
ATTTACTTTTCTTGTCAAGCAGATAAGAAGTTTTGTTATTTCAGATCATC
TTCCATCGATTCTATTTCAATTTATCTTTAGATGGAAATCCCAGCTTGCA
GAGTTGACAAAGCTTCCATTATTCTGCAAGGTATTTGATTTTCCACCAAA
CAATTTATAATCAATTCCCAAGCAAAATCGTATGTGCCAGTGCGTGCTCA
AACTTTTCATAATTCAAAATTTACTATGTAAAATGACTTTCTGAAATTCA
AAAGGAACAtatcaattttgaatttcaaatctaaaaccttgagaatattt
tttcattgaatttccTTGATTCCTGTAGTGATAAATAAGCAAAACAGATT
GTTTTTCCACAACAGGTGGTGTGTGGCAGTAACATGCTATGCCACGTCGG
CCATAACATCCTCGGTATGAACACTGTTCAACTTTACATGAAGATCCCTG
GATGTCGAACTCCAGGtaattatatattttataattcATCAAGCTCCTAG
GTTTCCTCCGCACGGATGTTAAAGATTTTGAGCTTTCATTTACTTGCATT
AGTTATTTTTGTAATAATAGTTTATGACAGGAAGTAGAATTagttttttg
ttattgtttgttttgattgtcaaCTTTGTGTCATATTCaggtattttatt
atttttaggccATCAAGAAAATAACTGTTTTGCCTCGATCAACATAAACA
TTGGGCCAGGCGATTGTGAATGGTTTTGTGTTGATAATGATTATTGGGGA
GTAATACACGAGCTGTGTGAAAAGTAGGAATTTCACTTTTAATCTGTAAT
TAAATTTTCTGTCATTAACAGTGTTGCAATCAAGTGCTATTATCTCTCTT
CCTTTGTTCAAATTGATCTCAGGAAAGCAACATTTTCTATCAGTTTTTAT
GACATTGCAGGTTGTTATGAAGTTGTCTATTGCAAatattacttttttga
aaaagtgaggTTTTCGTTTgtatttaatttgttgttttacggcaTTGTTT
TAATTCATGATCTTATTTATTTTCACGCTTTAGANatttgttgttttacg
gtaTTGTTTTAATTCATGATCTTATTTATTTTCACGCTTTAGACATGGTG
TCAACTTCTTATCAggtttgaaaactttttatttataGATTTAAGTACTC
CTTACAGTAATTATGATCATTGACAATTTGCGTTTGTTATCACTCTTGCG
GTCTCGTACTTTATAGCATAGTACTGTCTCGGTCCAGTCCAATTCTTTGG
CGCAGTTTTCATGtctagttttttaaataacataGAATTACTCTTGTAAT
CTTCTGATGAGAAATATCAACCCAGGCGTTTAAAGCAAATTTAACAACCC
TAACACACATAGCCAGGATTTTTCATGCAAAACGGTTCTTTTTCCCTGAA
TTTAGGTTCTTGGTGGCCCATCCTTACAGAGTTGTATGATGAGGGTGTTC
CTGTCCACAGATTCATTCAAAAACCAGGAGACTTAGTTTGGGTGAACTCT
GGAAATGTCCATTGGGTGCAAGCCATTGtaagaatttcaatttcaatttt
tgaatgaaCTTAAAGATCTGACATTATCAACATTCTTAAATGTAATGAAT
GTATTTCTATTTCAAATGATACACTCTAAGAGCATGaacctttcatgtca
aaaaagtccTGAAAACCCTGAAAACACTTTGtctgaaacactttttctga
acctttcatgctttttgggggtgtttttggcaaaaatcatttCCCAGAAA
CACCTGACCTCTCAAGGTGGTGTGTTTTCAGCAATTCCTGTGTTCCTGGG
ATTTACATAAATCAACTCTCAATTTTCTCCCTAAAATCCAAGCCAAAATG
CATTACCTGAAACACCTGCAAGTTTCTGAACCATTCAGTGTTTTCTCTGG
CGTTCAAGGTGTTTTTTAAGAcgattttgaagctcttgcagtgTCCTGTC
GGaaccaatcagataaaaatcgCGTTGTAAATCGGGTTAGAAAATCggta
aaaaatcgggaaatttacAGTCTGGACTTTTTTAACAGCCAGCTTCAACA
GGACATTcgatgtttttaaaaacttttaaaactgaACCATTTGTGTTCAA
GAGTGTTTTTAAagacatgaaaggttcaggctctAATACGGCCAGTTTGA
AAAAGTATTGAAGTTTTGATTTCCATTTTGACCCTATGTATTTTTAGGGC
TGGTGTAATAATATTGCTTGGAATGTTGGTCCACTTATACGTAAGTAAAT
ATTGTGTTAGAAAAGTTACAATTGTTGTAGTTGTatttagttttaaaaac
aggtaaaaaatGTATTGGAATACTTGAACTtttagatatattttttttgc
attttttggaaGCTTTTAATGTGCTATGATTTTTAATGACTTATTTTTAT
CTTCAGCAAACCAATTCAAATTAGCTGTTGAAAGATATGAGTGGAATAAA
CTGCAAGGTAAAATGCTGTTATTTTANAATTAGCTGTTGAAAGATATGAG
TGGAATAAACTGCAAGGTATAATGCTGTTATTTTATACGACTCATTatgg
aaaaaacaaaatataggAAATCTGATGAATCAATCTCCTAAATtgtttgc
ttcatttttctagATTACAAATCAATTGTTCCAATGATAAATCTATCTTG
GAGCTTGGCAAGGAATATTCGAATACCTGAAGGCCAATTAGGTGAACATG
TGAAGTGAGtcctatttttcatttaaatttttatacatcCAAAGGAATCA
AAGAGTTTCCTGCCCAACAATTTTAGCTTGTACGACAGAATAATTTGCTT
TTTCCTGGTTGTCTCATCAGTATTGCTTATTGCCTTTTTTAAATCACTAA
AGTCTTGATAATTCTGACagattttaaataatttttatttattcacaTAA
ACTAGAGTTTGTTTGGAGCGCTCACTACGCTATTGTGTCCGGACATGTGA
AATTCTTAAGGATATGAATATTGAAGTACAATGGCATGGTCGTGAGAAGA
ATGAAGCTGCACATTATTGTTCAACATGTGAAGTGAGTAACTTCtataga
aaatctatttttcatATTGAAGGCTTCAGGTCTCAAACTTGAAAACTACC
TGTTCATACCAATCATACATTagattttcttcaaatgaaaattaactttt
aTCTTTTAATTATCAACAATCTTCATTGTCTTTTTGCGTCAGGTTGAAGT
GTTCAATATTTTGTTTGTCAAAGAAATGAACAAGAAGTTGATGGTTCATT
GTCAAGACTGTGCACGAAAAACAAGCGTCAGTTTGGAAGGATTCATTGTT
CTTAATCAGGTATGTTTGCTTGTAAGTTTGACCAAAAGTAGAAAAGTTGT
TATGTAGGTACATTCTACTAATGCAGAAGCAGATCTATGATGAAGATTTA
TTCTAATGATATAGATACCATATTTTTTTCTGTACCTTCCTTTGCCGGAA
TCTATGTTGATCTACTctgtattttaaaaggaaaaaaacacCTTATCGCC
AAAATTTGTCTCTAAAAGATATAAAATTTGTACATGATGTCAGCTTTgta
attttggagaaaaatctGTGTGTTGATTTGCTCAATATTTTTCATGGAAC
TTTTTTACGTCAGTAAATTCTGTATTTTACAAGGAAAATAAATCTTTTAA
GATTTGctctatattttgaaaaataataagtCTGTGTGTAGGTAGATTTT
GCTCTGTATTTTACAAGGAAAATCTGTTTGTAGAATTAGGGGCcctccac
atagtacgtacacagtgaaggggAGAGAAGAGGACttagcaaaagcgtac
gtcTATTGTTTATATGTAAGCCtttatttctattgttctctgggTACAAG
GGGGAAAGGATTTCCAATATTTGGAAAAATATGGCTGACCCcttattttg
tattttacaaGGAAAATTTATATCTAGATCTGGGTCTAGATTTGATTTGT
ATTTGCAAGGAAATTCTGTAAGTTGAATGAGTTCCTCTGCATTTTGCATG
AACTGTATGTAGATTtaagtaattttcaaaaaaatcttcataGAATTATT
TGGTATATTACAGACAAAATCAGTATGTATAATTGctctgtattttccaa
ggaagatctggttctgtattttccaaggaaaatttatattctgTATTTTG
CAAGGTAAATGGAATTTTGTGTAGATTTGCTTTGTATTTTGAATGGAAAA
TGTATTACTAATGTTTTACTCTGTATTCTACAAGAAGAATCTGTTTATTG
AATTGTTCTgtatttttaaaaggaaaatctgtaagtaagtttgtttgttt
gttgtctTTTTGCAAGGAAAATTTTTACGTGGAATTGCTTTGTATTTTGT
AAGGAAATTGGATGTAgattagactagagtctacttataactgaactttg
ctttctgataattttgATGGCAGTAGACTTGGAGCACTTGACAAGGTTgc
tattttgaaagaaaaacactaagaagccaaataaaaataaagctaTTTGG
AgttgaaaattttatcaaaaatcaaaaaccaaCATAAAAAACAGTAATTT
CCAAAATATAATAGATTCTAAGAACTACCTGAGGGGTCACTAAATTGGCT
ATCCATATGAAAAAGCTTCTAGTAGGCGCCAGTATTTGTATAGATTTATT
ATGTATTTTGCAAGGAAAACGTGCATGTAGTATTACTCTATATTTCACAA
GGAAAATCTGTATGTTGGAATGTTCTGTAATTTACAAGGAAAATATCTAT
GTAGGATTGCTCTGTAATTTGCAAGGAAGATCTGTATGTAGAATTGCTCT
GTATTTTGCAAGGAAAATCTGTATGCACAATTACTGTGTATTTTGCAAGG
AAAATCTGTATGTAGAATTGCTCTGTAATTTGCAAGGAAAATCTGTATGT
AGAATTGCTCTGTATTTTGCAAGGAAAATCTGTATGTAGAATTGCTCTGT
ATTTTGCAAGAAAAATCTGAATGTAGAATTACTGTGTATTTTGCAAGGAA
AATCTGTATGTAGAATTACTCAGTATTTCGCAAGGAAAATCTGTATGCAC
AATTACTCTGTATTTTGCAATTGGAAAATCTGTATGTAGAATTACTCTGT
ATTTTGCAAGGAAAATCTGTATGTACAATAACTGTGCATTTAATTTGCAA
GGGAGCTCTGTGTTTAGaattgaaaaaatgtaaaattgcTTTTGGGATGT
TTGCCTTAGttcaaattttgtaaaaaatctttccAGAGAATTGGTTAAGT
ATCTTGTAAGgatatgtaaatattttttcatagtgTCCACCTAATCTCtc
tacaggggggggggttaggATTTTTGGCCTAAATAGACCAGGTGGGACCT
TTAACCCCTCTTGACACTTTGATAGTTAACAAAGAAGAAATTTATCTaga
tttctttgtattttgcaGGGGAAATATATTTGAATatggtcaaaatctat
cttGATTTCCTGAAGTGAAGCTTgtttgtttgtatttttgaaataaaatt
tactGATTTAATTCCTTCTCAAAAAAAGTCCTTCTGATAACCTGGTAATT
TTGAAGGAAACCCTAGCACAGATCTTTGTGTTTCGACGACCTTACATTAC
TCAAGGAAGGTCAAcgtttttgaagggattttttcatatttgtatttttg
aattttcgattttcctttTCAGTATTCCATGGAAGAATTGGAGCAAGTTT
ATAACGCATTTTGTGTTAACATGGTGAATGTGAGTACTCCATCCACTTAT
TTCGAAAAAAACTGATCGAAATGATTTCAAGTGTCCTTAGAAGCGCTTTT
TACAACATTTATTTCTTTGCAAAAAATTAATCCCTCATTATTGTCACCTT
CCAAAGGAAAAAAAGTTCCCTTTCCTCCCTTATAATAAATAGCTTCACTT
ATTGAGACTGGAGAGATTTGAAGACTGTTGTTTTGAATACCATTTTTGTT
TCTGTCAAGCTATTACGCTATATGAAATATAAGAAAATCGATGTCACTGA
ACTTTACTAGCTAGCGTCAATACCTAATGGACATCAGAGTAATAGAAGAT
ATTGTTCATGTTTTTTGTCTCCTCCAGGCTGCCAAAGGATCAACCAGCAC
AACTGCAACATCTACAGCTGCTTCAAGTCAGCAACAACCACCACAAGCAC
CGCCCATCACAACAAGTGCTTCTTCATCTTCTGCACCAACGCCCAACCCT
CCACCCCAACCTGTTCCACCGCCACCAGTGGAAGAGAAAACGTGAATGGG
CGCCCTAACGTTCTCAAGTATGGTATTGTAATGTTGATAGTGTTATTTAT
TGGACTCCAAAACTAAATGCAATCTTtcctttattatttcatttagCTTG
AAATTGTAAAAGCTTTTTGATGGATATCCTATTGATATTAATGACGATGA
CTTTAGCAGTTGAAGACGTATTTGAAGCTATTTCATTTTGCCATTTGTGC
TTGAGTCTCCATTTGCACTTGCCAGAAGGCAAACACATTGAATGgcattt
ttttggcttttttttatTGTGAGAGTCTTCGTCTATTGTCCTATATGTCA
AGCAAATTTGCTggcaattttatcaaattatagTATGATAATGAATAGTG
TAATGTAATTTAGTGTATAATATTGAGTATGGTAATAATTATGatgtata
ttacatattgtcaCTGGAATCATGAATGGTCTGAATCTATATGGTAGTAG
ACACAGATAGATTTCGCATATTTCTCACCAATTATCAGTTTGTTCAGTAA
TTTTGCTGTCTTCAATATTaccccttttcaaaaattttttatcaataatc
tTTATTGCATAGTTAGTGAAATTATCATGATTTTTTTGTAGTTGTGTTTT
TTTAggactttttactttttactatTACTATTATGTGTTCTATTTGATCT
GTCCTTTGTctaatttttatgtttgaaattttatgTCCTTGTCTGATTTG
TTTTCTAAattaaaataaaccagctgcgctggaagctctaGCCGTAAGCT
GAGAAAGATGCAAGGATTAGATAAAATAAACAGGTCGGAAATGGTATGCA
AAAAGGGGATTCATAATATGCATAACTGTTATATTCTTCGGACATACCCC
AAAATTTTCTCCCTATTGCGCGTCATATGAGTGTCACGGGGGCCAAAATT
AGCacataaagaaaaaaaacgaacTAATTAACTTTAGGGGTGATTTTCCT
AAGGGTAAAATTTGTTTGTGCGAATGGC

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_003935	XLOC_003935	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000073	supercontig	sc0000073:349204..359981 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.79614	2.05601	1.86435	0.789159	2.28611	3.54847	2.49841	3.45301	1.84012	3.69745	2.08517	1.77314	2.56237	2.61528	2.3297	3.98912	5.09996	1.96409	2.87275	1.18712	3.29605	1.7943	2.66443	2.7903	0.682856	1.63725	2.84071	2.52113	1.90534	2.0501

Blast

[Close]

BLAST of TCONS_00007038 vs. Swiss-Prot (Human)
Match: KDM6A (Lysine-specific demethylase 6A OS=Homo sapiens GN=KDM6A PE=1 SV=2)

HSP 1 Score: 566.614 bits (1459), Expect = 4.977e-178
Identity = 274/458 (59.83%), Postives = 339/458 (74.02%), Query Frame = 2

Query: 1139 QLYPPTPSITVQDRREAMSPALRNFCYDKRNPVTVVKGLCKALKLDLSLFTTRRLVEQNPDHSIEIRHQRQQRTDENLDEEGKITVWRCRSSKSKMTIAKYAQYQASTYQDSL--QSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFGTNVDLSDTKKWKSQLAELTKLPLFCKVVCGSNMLCHVGHNILGMNTVQLYMKIPGCRTPGHQENNCFASININIGPGDCEWFCVDNDYWGVIHELCEKHGVNFLSGSWWPILTELYDEGVPVHRFIQKPGDLVWVNSGNVHWVQAIGWCNNIAWNVGPLIPNQFKLAVERYEWNKLQDYKSIVPMINLSWSLARNIRIPEGQLGEHVKVCLERSLRYCVRTCEILKDMNIEVQWHGREKNEAAHYCSTCEVEVFNILFV-KEMN--KKLMVHCQDCARKTSVSLEGFIVLNQYSMEELEQVYNAFCV 2497
            +L PPTPSI ++++R+A  P L  FC +  NPVTV++GL  ALKLDL LF+T+ LVE N +H +E+R Q  Q  DEN D  G   +W C S++S  TIAKYAQYQAS++Q+SL  ++E     ++  + E    +    ++K  FK IKFGTN+DLSD KKWK QL ELTKLP F +VV   N+L HVGH ILGMNTVQLYMK+PG RTPGHQENN F S+NINIGPGDCEWF V   YWGV+++ CEK+ +NFL GSWWP L +LY+  VPV+RFIQ+PGDLVW+N+G VHWVQAIGWCNNIAWNVGPL   Q+KLAVERYEWNKLQ  KSIVPM++LSW++ARNI++ + +L E +K CL R+L+ C    E L     E+ WHGR K E AHYCS CEVEVF++LFV  E N  K  +VHCQDCARKTS +LE F+VL QY ME+L QVY+ F +
Sbjct:  935 KLNPPTPSIYLENKRDAFFPPLHQFCTNPNNPVTVIRGLAGALKLDLGLFSTKTLVEANNEHMVEVRTQLLQPADENWDPTGTKKIWHCESNRSHTTIAKYAQYQASSFQESLREENEKRSHHKDHSDSESTSSDNSGRRRKGPFKTIKFGTNIDLSDDKKWKLQLHELTKLPAFVRVVSAGNLLSHVGHTILGMNTVQLYMKVPGSRTPGHQENNNFCSVNINIGPGDCEWFVVPEGYWGVLNDFCEKNNLNFLMGSWWPNLEDLYEANVPVYRFIQRPGDLVWINAGTVHWVQAIGWCNNIAWNVGPLTACQYKLAVERYEWNKLQSVKSIVPMVHLSWNMARNIKVSDPKLFEMIKYCLLRTLKQCQTLREALIAAGKEIIWHGRTKEEPAHYCSICEVEVFDLLFVTNESNSRKTYIVHCQDCARKTSGNLENFVVLEQYKMEDLMQVYDQFTL 1392

HSP 2 Score: 92.0485 bits (227), Expect = 1.465e-18
Identity = 48/97 (49.48%), Postives = 64/97 (65.98%), Query Frame = 2

Query:    2 LQAYVCAVQLDSNHVAAWTDLGVLYETAGRFEDSMICYKNALKACGTSNI-GLETRMRILKEKMAS-PMVAEVNKN--LPGIEAAWKLPIPAELTAR 280
            LQAY+CAVQLD  H AAW DLG LYE+  + +D++ CY NA ++   SN   L  R++ L+ ++ + P  +  NK   LP IE AW LPIPAELT+R
Sbjct:  338 LQAYICAVQLDHGHAAAWMDLGTLYESCNQPQDAIKCYLNATRSKSCSNTSALAARIKYLQAQLCNLPQGSLQNKTKLLPSIEEAWSLPIPAELTSR 434

The following BLAST results are available for this feature:

BLAST of TCONS_00007038 vs. Swiss-Prot (Human)

BLAST of TCONS_00007038 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
KDM6A	4.977e-178	59.83	Lysine-specific demethylase 6A OS=Homo sapiens GN=...	[more]

You are here

TCONS_00007038 (transcript) - C. hemisphaerica