TCONS_00006928 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00006928
Unique Name	TCONS_00006928
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	599

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000072:303767..306684-

transcript sequence

>TCONS_00006928 ID=TCONS_00006928|Name=TCONS_00006928|organism=Clytia hemisphaerica|type=transcript|length=599bp
gaaaaaaatcaacagaaAATTGAAATAGATGTAAAGAAAGTCAAACAAGA
AATGGCTTGAATATGATTTTGTGGATTccaatataaataaaataatgagA
CGGAGTAAAGCTCCAagccagaagttttcaccaaccCAACAACAGTCAAC
AAATGCTcgaaaacacaagaaaaatgtAGCGTGTAGTGATGATGACAGTG
ATGAAGATTACAACCCATCAGATTCTGATGAAGAATGCAGTCGGAGGTCC
TCGAGAAGATCTACAACGAAAAAGtgtaAAACATCAGTAGTTGCATTATA
CAACCCAAAAGAATTTTTATCACAATATCGCAAACCATTGAAGGAAATTG
ATCAAGAAGATGGCGAAGAGGGCAATGTTTCAGCTCATGAAGCACTCATC
AAAAGTCTTCTCTCCAAGCCATTCAAAGTTCCTATGAAGAATTTCAAAGG
GAGCAACCATGGAAGAAGCCTTGGGATCAGAAGAGTTGCACACAAACTTT
GTTTGTATGATCCTTTCGAAGAGGGAGCACTTGTTTTGTACCACCCACCT
GAAGTTACAGCTCATGAGAAATTAAGTGCTAACAAaGAGGAGATTCTTG

Run BLAST on NCBI

transcript from alignment at sc0000072:303767..306684-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00006928 ID=TCONS_00006928|Name=TCONS_00006928|organism=Clytia hemisphaerica|type=transcript|length=2918bp|location=Sequence derived from alignment at sc0000072:303767..306684- (Clytia hemisphaerica)
GAAAAAAATCAACAGAAAATTGAAATAGATGTAAAGAAAGTCAAACAAGA
AATGGCTTGAATATGATTTTGTGGATTCCAATATAAATAAAATAATGGTA
TGTTAAATTTCTTCATTTTCTTCATTTTCTTCAGAAGTTATTTCTCTTGA
TTGGATGACGATTGAAGATAATTTTGATGAAAAATCTATATTGTTCTCAA
TTTTATTAATATTTTTACAAACAAGAAATATCAGACTAGGAGTAGGAGCC
CAATCAAGCTTCTGGCTAAAGGCACTTACTATTGTTATGATAATACTGAA
CTTCTTATTCTTTCAAACTCATTTGTTTTCATATTTTTAGAGACGGAGTA
AAGCTCCAAGCCAGAAGTTTTCACCAACCCAACAACAGTCAACAAATGCT
CGAAAACACAAGAAAAATGTAGCGTGTAGTGATGATGACAGTGATGAAGA
TTACAACCCATCAGATTCTGATGAAGAATGCAGTCGGAGGTCCTCGAGAA
GATCTACAACGAAAAAGGTTCTAAAATACTTTTTCAAAATACAATAGATT
ACATTTGGTCTTTTTGTATAATTGTAGTTAGGCAAGGCCAATTTAAATTT
GTTGTTTTACGGGCCAAGCTACCCAAAAAAGAGGGTCGGTTGGCGAAACA
ATAAAAATAAAGGTAGAATTTCACCTATAAAATCTTCTAAAAAGGCAGCA
AAAACTACAACAATTTAACGAAAATGCGAAATAGAAAATAAAAAAAAACA
AAAAGGTTAAATTCATGGATAAAATGAAAAGTTGAACATAAAATTCTCAA
AACCTTGGAAAAATAACCAAAATTTTAAAAATTGGTAGTCTGTAAAGCAA
TGAAAATAAAAATATACTACAAAAATTAATTTTATTTTTATTTCAATTTT
TGGAATTTTAGGTTTTATCGGGCCCGTAAAACAACTAATCAAATTGGTCT
CGCCTTACAGTTACATTATAGGAGATTCTTCGGTGATCTATTTCCCCTTC
GCTTAGATTTTAAGGATGTCAAAATTTGTACAAGTGTGTCTTTCATTCTG
ATTTTGCAGTTGAAAGGAATCATGGGTAATGGACCACCTTGCTCTGATAG
CGATTTTCTGTTGGTCTAAAATTTATCGGGTCTAAGCTGCTATTGGGGTA
TGATCAGTTTTGATTTCCAATAATTATTTATTTCGAATGTGAAATTTCCT
ATTATTGAAATTTTCATTATTAAAACAAACTTTTTCTGTGGTAAATTTTG
CACTCATCCTTACACTTGCTACAACAATACAGTTACTCAGAAATTTAAGA
TAAACAAAAGTGTTTTTTTATTTTCAGTGTAAAACATCAGTAGTTGCATT
ATACAACCCAAAAGAATTTTTATCACAATATCGCAAACCATTGAAGGAAA
TTGATCAAGAAGATGGCGAAGAGGGCAATGTTTCAGCTCATGTGGGTAAT
TTTCATGACACTTTGGTTAGATGTTCTGGGATATCAACTCAGTCAAGGAA
TGGTTTATTGGTTATTTTAGAGTAATTGATTGAATTTGGCTAATTTTGTG
CATCACTTGATATAGATAGATTTTTAACAAGGGGGAAACTTTGATCTAGT
ATATTCTTATATAAAATTATCACATGCCCAGAAAAATCAAACATTTCTTT
CAACTGACCTATCTTTTCTATTTATAGGAAGCACTCATCAAAAGTCTTCT
CTCCAAGCCATTCAAAGTTCCTATGAAGAATTTCAAAGGTTTTTATTTAT
CTCGATTTTGGTAAATTATTATGTCTTATTTGAATGTTACCAATGGATAA
AGACGATGTTATCTATGTACTGTACTAGACATTAGATTTATACCTTGAAC
TTTATCTTCTTGACTTTTTGATTATTGTTACTTGTTTTAGTTGACAATCA
GGCTAGCTTTTTGCATAAGAATAAAGTAATAATTGCAGTAGGCTTAGGCA
AAGTCTATGTTCGTATGTAAAAAAACATTACATTCTCTTTCCATCCTCAC
CAGGGAGCAACCATGGAAGAAGCCTTGGGATCAGAAGAGTTGCACACAAA
CTTTGTTTGTATGATCCTTTCGAAGAGGGAGCACTTGTTTTGTACCACCC
ACCTGAAGTTACAGCTCATGAGAAATTAAGTGCTAACAAGTAAGTTTGAT
ATTAGTGCTCTTTTACCATTATTCTTTTTGATCGTGCAGAGGGTGGGGGT
GCAGTTACTGTGTGCAACTAACACACCTGCTTAGTGTTGTGGCCTAGTTT
TGAACAGTTACTACAGATTCGTAGTACTTTTGCAGTAAATTGGTCAGAAT
TATTAAAGTGTTAGGCTAATTTTTTAGGGAAAAGGTTATCAAAGGATAAT
GTATACAAAATTTTGACTGAAAAGCAGTTGCTACATATACTTAGTAACTG
CAAAGAGTGGTTATATAGAATTGGTGGCTTCAAAAAAGCACTTTCTATTG
ACCACCTGCATAGTGTTGTTCTTCAAAGCTAAGCCAGCACCATAAAGGCA
TATGACTTGAAAAGCTCTAGATATGAAAGCACTGAACGAATCTTATTATG
TCCAAATTTTCTTATTGTTTTCTTTCTTCTTTCTAGAGAGGAGATTCTTG
TTCATGGTAAGAAGTAGTAAAATCTTTATAAGAGTCTTCAAAATTTTCAA
AGTCGTTTGATGTTAGTTTTGATTCTTACGGGGGTGGTCGGCATCTGTAC
CATACAGTACCTAACCTCCCCCTCCCCCCTCCCATAGCACCGAAATGTCC
TTATTCTAATTATAATCAATTGTATCATTGTGCAATTTCCTAAAATTGGG
TGTTTCTAGAGTCTGCAANAACGTGAAAAGCTCTAGATATGAAAAACACT
GAAAGAATCTTATTTTGTCAAAAATGTTCTTATTGTTTTCTTTCTTCTTT
CTAGAGAGGAGATTCTTG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_003876	XLOC_003876	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000072	supercontig	sc0000072:303767..306684 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.818717	2.26207	3.19298	2.82152	4.10965	3.2475	5.9062	5.6388	5.59599	5.98202	4.56209	5.05881	1.87551	1.72783	1.83375	1.82931	2.28771	1.92486	0.338456	0.657743	0.879536	0.772212	1.51239	1.37498	6.93449	7.19129	0.561312	0.465926	1.11065	1.13157

Blast

[Close]

BLAST of TCONS_00006928 vs. Swiss-Prot (Human)
Match: RAD54 (DNA repair and recombination protein RAD54-like OS=Homo sapiens GN=RAD54L PE=1 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 2.934e-20
Identity = 43/94 (45.74%), Postives = 66/94 (70.21%), Query Frame = 2

Query:  314 FLSQYRKPLKEIDQEDGEEGNVSAHEALIKSLLSKPFKVPMKNFKGSNHGRSLGIRRVAHKLCLYDPFEEGALVLYHPPEVTAHEKLSANKEEI 595
            FLS +RKPL ++  +     + S HEA I+S+LSKPFKVP+ N++G    R+LG++R   +  L+DP E+ ALVLY PP ++AH++L  +KE++
Sbjct:   47 FLSPFRKPLSQLTNQP-PCLDSSQHEAFIRSILSKPFKVPIPNYQGPLGSRALGLKRAGVRRALHDPLEKDALVLYEPPPLSAHDQLKLDKEKL 139

The following BLAST results are available for this feature:

BLAST of TCONS_00006928 vs. Swiss-Prot (Human)

BLAST of TCONS_00006928 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
RAD54	2.934e-20	45.74	DNA repair and recombination protein RAD54-like OS...	[more]

You are here

TCONS_00006928 (transcript) - C. hemisphaerica