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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006792 ID=TCONS_00006792|Name=TCONS_00006792|organism=Clytia hemisphaerica|type=transcript|length=1191bp
tagataaacatgcgttttttgagccaacaaaatttttttgcaaaaatctg
cttgagccatcttatacctatgatggtaccctactttcgtgcaaaaaatc
agataaaattaatgatccaatttttcacaaagtccaaaaaacccgttttt
tagccgctttttggcccaaatttgccccaaaaatttttttttcgaaaatc
ggGCTCCGTCACATTTTGGGCATTTCCATTTTGCATCATTGTGCAAAAAA
TTAGAAAAaactaatgagccaatctcgagaaaagctggtaactaacggac
ggacagacggacaaaggttaatttataggacctccaccggggtaggtcca
aaaattgttttattactggtaaacgaccaaccaaatcaaataagagcttg
NCACGATGAATAAATCCTTCAGCGTGTAGATATTTCATACCAGCTGCAAT
CTGTTGTGCCATGTGTATTAAAGTATCTACAGATAGAGCATCATCCGGCA
ACATACTAGCCCGTATATTATGCTCATCGATCGGTCGCTTTTGCCGTAAA
TATTGATTCAAATCTCCATTTTCCATGTACTCACAGACCATGATCATTGG
TTTATCTTCACACACGCCCAACAAACGTACCACGTTTTCGTGTTTCAGTT
CGGCCATTACAGTCACCTCTTTTAAAAACTCCTCCTCAATCATCGCATCG
TCcgattttaaaactttcaccGCTACATTAGCAGTGTCCGGTAATCCCCA
TGAGTTATAATGTCCAATAGTACCGTAAATGTCATCTAAACCAGTCGCTT
CTGCAATATGAACTTCACCGAATTGACCGACACCGATTTTCTCACGGAAT
GCTAATTGTTCTCTTGGGAAGCTTCTCAGTGAGGGTGgtaattttgatga
aacaacCTTAGCGGGGTCAGCGTAAACAAGAGTCGACGGAGCGACTGATT
GGTAAGGGTTCTTATAAGTAGTTGCGTAAATGGCGCTTGATTGGTAAATC
TCTGGCTTTTGATCAGGTTCGGCGTATTGTTTCGTGTTTGGCGCAGCATA
AAGAGATGGATTGCTGTCTGCGTGGTCATTGATCGTATTATATTGGGCGT
ATTGTGAGGCGTTTCCGTCCAGAGATGACTCGCTGACGGAGACTGCTACT
TCGGGGGCGGCGTAAACTTGTTCCATGTCATGATCTATGAG Run BLAST on NCBI transcript from alignment at sc0000070:437866..439111- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00006792 ID=TCONS_00006792|Name=TCONS_00006792|organism=Clytia hemisphaerica|type=transcript|length=1246bp|location=Sequence derived from alignment at sc0000070:437866..439111- (Clytia hemisphaerica)
TAGATAAACATGCGTTTTTTGAGCCAACAAAATTTTTTTGCAAAAATCTG
CTTGAGCCATCTTATACCTATGATGGTACCCTACTTTCGTGCAAAAAATC
AGATAAAATTAATGATCCAATTTTTCACAAAGTCCAAAAAACCCGTTTTT
TAGCCGCTTTTTGGCCCAAATTTGCCCCAAAAATTTTTTTTTCGAAAATC
GGGCTCCGTCACATTTTGGGCATTTCCATTTTGCATCATTGTGCAAAAAA
TTAGAAAAAACTAATGAGCCAATCTCGAGAAAAGCTGGTAACTAACGGAC
GGACAGACGGACAAAGGTTAATTTATAGGACCTCCACCGGGGTAGGTCCA
AAAATTGTTTTATTACTGGTAAACGACCAACCAAATCAAATAAGAGCTTG
NCACGATGAATAAATCCTTCAGCGTGTAGATATTTCATACCAGCTGCAAT
CTGTTGTGCCATGTGTATTAAAGTATCTACAGATAGAGCATCATCCGGCA
ACATACTAGCCCGTATATTATGCTCATCGATCGGTCGCTTTTGCCGTAAA
TATTGATTCAAATCTCCATTTTCCATGTACTCACAGACCATGATCATTGG
TTTATCTTCACACACGCCCAACAAACGTACCACGTTTTCGTGTTTCAGTT
CGGCCATTACAGTCACCTCTTTTAAAAACTCCTCCTCAATCATCGCATCG
TCCGATTTTAAAACTTTCACCGCTACATTAGCAGTGTCCGGTAATCCCCA
TGAGTTATAATGTCCAATAGTACCGTAAATGTCATCTAAACCAGTCGCTT
CTGCAATATGAACTTCACCGAATTGACCGACACCGATTTTCTCACGGAAT
GCTAATTGTTCTCTTGGGAAGCTTCTCAGTGAGGGTGGTAATTTTGATGA
AACAACCTTAGCGGGGTCAGCGTAAACAAGAGTCGACGGAGCGACTGATT
GGTAAGGGTTCTTATAAGTAGTTGCGTAAATGGCGCTTGATTGGTAAATC
TCTGGCTTTTGATCAGGTTCGGCGTATTGTTTCGTGTTTGGCGCAGCATA
AAGAGATGGATTGCTGTCTGCGTGGTCATTGATCGTATTATATTGGGCGT
ATTGTGAGGCGTTTCCGTNTGTCTGCGTGGTCATTGATCGTATTATATTG
GGCGTATTGTGAGGCGTTTCCGTCCAGAGATGACTCGCTGACGGAGACTG
CTACTTCGGGGGCGGCGTAAACTTGTTCCATGTCATGATCTATGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00006792-exon-sc0000070-1575043694:438004..439111 | TCONS_00006792-exon-sc0000070-1575043694:438004..439111 | Clytia hemisphaerica | exon |
| TCONS_00006792-exon-sc0000070-1575043694:437866..437948 | TCONS_00006792-exon-sc0000070-1575043694:437866..437948 | Clytia hemisphaerica | exon |
| TCONS_00006792-exon-sc0000070-1510915933:438004..439111 | TCONS_00006792-exon-sc0000070-1510915933:438004..439111 | Clytia hemisphaerica | exon |
| TCONS_00006792-exon-sc0000070-1510915933:437866..437948 | TCONS_00006792-exon-sc0000070-1510915933:437866..437948 | Clytia hemisphaerica | exon |
| TCONS_00006792-exon-sc0000070-1491911889:438004..439111 | TCONS_00006792-exon-sc0000070-1491911889:438004..439111 | Clytia hemisphaerica | exon |
| TCONS_00006792-exon-sc0000070-1491911889:437866..437948 | TCONS_00006792-exon-sc0000070-1491911889:437866..437948 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000070 | supercontig | sc0000070:437866..439111 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004672 | protein kinase activity |
| GO:0005524 | ATP binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006468 | protein phosphorylation |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006468 |
protein phosphorylation |
| molecular_function |
GO:0005524 |
ATP binding |
| molecular_function |
GO:0004672 |
protein kinase activity |
Blast
BLAST of TCONS_00006792 vs. Swiss-Prot (Human)
Match: DDR2 (Discoidin domain-containing receptor 2 OS=Homo sapiens GN=DDR2 PE=1 SV=2) HSP 1 Score: 121.709 bits (304), Expect = 1.480e-29 Identity = 68/166 (40.96%), Postives = 98/166 (59.04%), Query Frame = -1
Query: 403 SLRSFPREQLAFREKIGVGQFGEVHIAEATGLDDIYGTIGHYNSWGLPDTAN----VAVKVLKSD-DAMIEEEFLKEVTVMAELKHENVVRLLGVC-EDKPMIMVCEYMENGDLNQYLRQKRPIDEHNIRASMLPDDALSVDTLIHMAQQIAAGMKYLHAEGFIHR 882
++ FPR+ L F+EK+G GQFGEVH+ E G++ + L +AN VAVK+L++D + +FLKE+ +M+ LK N++ LL VC D P+ M+ EYMENGDLNQ+L + P + + +S L MA QIA+GMKYL + F+HR
Sbjct: 554 AVEEFPRKLLTFKEKLGEGQFGEVHLCEVEGMEKFKD-----KDFALDVSANQPVLVAVKMLRADANKNARNDFLKEIKIMSRLKDPNIIHLLAVCITDDPLCMITEYMENGDLNQFLSRHEPPNSSSSDVR-----TVSYTNLKFMATQIASGMKYLSSLNFVHR 709
The following BLAST results are available for this feature:
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