|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006601 ID=TCONS_00006601|Name=TCONS_00006601|organism=Clytia hemisphaerica|type=transcript|length=982bp
CCTCCATTCAACACACTAGTTCCCATAGTAGTCAAAGCATCTATTGCTCT
CTTATTTGGTGTATCTTTACGTGAAATCATATACGCATGCGCAATATGAC
ACGTGTAATCTACTGAAAACCCAACCGCCATAATGATAATGATCATAGCA
ATCACATCCAGTGAAACGTCCCATGCTGTCATCAATCCTAGCAACTCAAA
CAACAAACTACTGAAACTAAGGAAAACTAATCCCGTAATTCCAGGATGCA
TCAGGTATGGAATTGTTATAACAACGATTGTTGCACCACAAATGgccaaa
ttcaaaatggtagcatcAACTACAGCAGCGAACTGTTCGGCATAAATAAA
CATTATAGTTGCAGCGTAGATTTCCTTCGATTTATCTTTTTCACCATTCT
TAAGTGGCGTAAGTTTATCAAGCTCGTCTCGTAAATCCTGCATTGCCGTA
GCTTGATTAGTCGCATCATTATCATTCACGTAAAACATAACAATACGAGC
AGCTTTTATTTTTCCAGTTGTGCTATCAAAAATAATATCAGGTGCGAACA
TTTTCTGTGCATTCAAGAACATGGGTAATGTTTGATAGAAATAGTCACTA
GTAGTATTTTGGGAAGCTTGAATTCCCCATTTTCTATATTGATCCATCCA
ATTGATGATATTCGGTGGGTCCTGGTATCGTGTTAAATTCTTCGCAATTT
CATTCAAACTGATGATTTTGTCCTGAATTTCAACTTCTCCAAAATCGTCT
CCACTGTACGGAAGTATAATTGAAACTCCATATCCGGCCGGGAAATTATC
ATCCCGGACAGCAGCGTATTGCCGGAAATAAGAGCCATCTGGTGCAGTTT
TTTTCCATTCGAATTTCTGTGTGATCTGGGTGGTCCCGTAAATACCGGCT
GCAAGAGTTCCGCAAgcgacaaaacaaacaatgatTTTCATTGGCATTGT
CATCAGAATTTCACCCCATTTACGCATGAact Run BLAST on NCBI transcript from alignment at sc0000069:661395..662430+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00006601 ID=TCONS_00006601|Name=TCONS_00006601|organism=Clytia hemisphaerica|type=transcript|length=1036bp|location=Sequence derived from alignment at sc0000069:661395..662430+ (Clytia hemisphaerica)
CCTCCATTCAACACACTAGTTCCCATAGTAGTCAAAGCATCTATTGCTCT
CTTATTTGGTGTATCTTTACGTGAAATCATATACGCATGCGCAATATGAC
ACGTGTAATCTACTGAAAACCCAACCGCCATAATGATAATGATCATAGCA
ATCACATCCAGTGAAACGTCCCATGCTGTCATCAATCCTAGCAACTCAAA
CAACAAACTACTGAAACTAAGGAAAACTAATCCCGTAATTCCAGGATGCA
TCAGGTATGGAATTGTTATAACAACGATTGTTGCACCACAAATGgccaaa
ttcaaaatggtagcatcAACTACAGCAGCGAACTGTTCGGCATAAATAAA
CATTATAGTTGCAGCGTAGATTTCCTTCGATTTATCTTTTTCACCATTCT
TAAGTGGCGTAAGTTTATCAAGCTCGTCTCGTAAATCCTGCATTGCCGTA
GCTTGATTAGTCGCATCATTATCATTCACGTAAAACATAACAATACGAGC
AGCTTTTATTTTTCCAGTTGTGCTATCAAAAATAATATCAGGTGCGAACA
TTTTCTGTGCATTCANACCAGTTGTACTATCAAAAATAATATCAGGTGCG
AACATTTTCTGTGCATTCAAGAACATGGGTAATGTTTGATAGAAATAGTC
ACTAGTAGTATTTTGGGAAGCTTGAATTCCCCATTTTCTATATTGATCCA
TCCAATTGATGATATTCGGTGGGTCCTGGTATCGTGTTAAATTCTTCGCA
ATTTCATTCAAACTGATGATTTTGTCCTGAATTTCAACTTCTCCAAAATC
GTCTCCACTGTACGGAAGTATAATTGAAACTCCATATCCGGCCGGGAAAT
TATCATCCCGGACAGCAGCGTATTGCCGGAAATAAGAGCCATCTGGTGCA
GTTTTTTTCCATTCGAATTTCTGTGTGATCTGGGTGGTCCCGTAAATACC
GGCTGCAAGAGTTCCGCAAgcgacaaaacaaacaatgatTTTCATTGGCA
TTGTCATCAGAATTTCACCCCATTTACGCATGAact
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00006601-exon-sc0000069-1491911889:661395..661935 | TCONS_00006601-exon-sc0000069-1491911889:661395..661935 | Clytia hemisphaerica | exon |
| TCONS_00006601-exon-sc0000069-1510915933:661395..661935 | TCONS_00006601-exon-sc0000069-1510915933:661395..661935 | Clytia hemisphaerica | exon |
| TCONS_00006601-exon-sc0000069-1575043694:661395..661935 | TCONS_00006601-exon-sc0000069-1575043694:661395..661935 | Clytia hemisphaerica | exon |
| TCONS_00006601-exon-sc0000069-1491911889:661990..662430 | TCONS_00006601-exon-sc0000069-1491911889:661990..662430 | Clytia hemisphaerica | exon |
| TCONS_00006601-exon-sc0000069-1510915933:661990..662430 | TCONS_00006601-exon-sc0000069-1510915933:661990..662430 | Clytia hemisphaerica | exon |
| TCONS_00006601-exon-sc0000069-1575043694:661990..662430 | TCONS_00006601-exon-sc0000069-1575043694:661990..662430 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000069 | supercontig | sc0000069:661395..662430 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR003392 | Ptc/Disp |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| cellular_component |
GO:0016021 |
integral component of membrane |
Blast
The following BLAST results are available for this feature:
|
