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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006427 ID=TCONS_00006427|Name=TCONS_00006427|organism=Clytia hemisphaerica|type=transcript|length=1591bp
CAAACAATGGGAGTAAAGATTTCTAAGGATTGTGATTCAATTTCGTCTGT
AAAGACATATTGTGAGTCACTTGTCTTCATTCGGTTTTATGGCCAGACCA
ATGCTATGAAGGTacttaaagttttttcaaatacagccaactctctgtaa
ttcgaactaaaatattggtccccttaGGCTGGAAAGTTGTTTATATagct
ctctgtaattcgaatctttttctaattcgaataaaatttttgatcccttg
aagatcgaattagagagagtcaacttcAAATGGTTATTGCGATTTATTTG
TTTATGGGTTTCCAAAGAGctgatttttaatttgatttaagGGGAAAATG
GACGGAGAAGAGTTTGATAACGTCAATGAAAACCCAAAATCTGAGCTTGG
TCGATTACTTCAACAACTggacaaagaaatcaaaatggcAGAGAATGATT
CGGAGTTAGAATTCACCGAACGAATCTTAGAAATATTCACGAAGATTGCC
GAGATAAGAGCTTTCACGCATACGGAGGAAACCACTGAACAATGTTTcca
aagatttataaaagatgCTGAAAAATTCGCTGAAATTTACCGCAAGCGCG
GGAAGCAATCAGAATCCTTGAAAGAAGCCAATATACTTTATTGGGGGACG
CGTCAACAAATGTTGTTCGGCAAAGTCCTTTGTGATTGGATAAATCGTGA
TAAAGAAACAGAAATGGAGACAATGGACCCGATATTCGGAGTATTATTAA
ATCCAACTGGTGGCAGAGTTGGCCCTGGAGACACGGGCTGGATTCATAAT
AAACTATTCGATGATCTCGGCCCCTTCGCTTATCATTCAGCTGTTCACGA
CGCTTTCGGATATTTGAAAATCAATCACGATACAGGCCCTGGTTACTCAT
ATTTGAATGGACGAAAAAATGGTGATTCGAACCCATTGCGGGGCCAGGTA
ACGGGTTTAAAGTTTTGGAAAGATGTTGTTAAAAGGCTCAAGCCTGAAGA
GGCTCCTGAAGAAAAATTTATATTGATGTGAATGTGTGAAAGGATTTTGG
TAGGCCAGTAAAACGAAATGCGAGCAACGGATTGTCAATTTGTGAACGTT
GGTCAAGTCATAATGCTGATGAATATTTTTAATTGATAGGTTCTCATGCT
AAGACGTATATGCCTGAATAAAATAATTGAacctttttgtaaaatattta
atttgagaatttttaatttttagtatGTATCCCTTTAAATGTTacttttc
ttttagttttagaCCCCACCCTTTAACCACTTTATTGTTGTTCTAACAGA
CTCAACTAGGAAGATAATTTTCTAATTGTAAGTAATGTAAGTAGAGTCAC
GTGAGAAACATTTGAAaggttgttcttaaatttctgAATCGGTTGAAACA
CAAAGTTAGTCCAACAAAGAAATATTACCTCGTAACAAATTAACTTGAGT
GATTCTTCTTCAGAAATCTCCAACAACTTTTTGAAGATGAAAGTCAACCT
CTCATAATCGAACGGACTTATCTAAAAAAAGTATACTCTATCTGTTgagg
ttttgaaaagttttgaaatccaTCCAGTAATAAAAATACTT Run BLAST on NCBI transcript from alignment at sc0000067:396558..398822+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00006427 ID=TCONS_00006427|Name=TCONS_00006427|organism=Clytia hemisphaerica|type=transcript|length=2265bp|location=Sequence derived from alignment at sc0000067:396558..398822+ (Clytia hemisphaerica)
CAAACAATGGGAGTAAAGATTTCTAAGGATTGTGATTCAATTTCGTCTGT
AAAGACATATTGTGAGTCACTTGTCTTCATTCGGTTTTATGGCCAGACCA
ATGCTATGAAGGTacttaaagttttttcaaatacagccaactctctgtaa
ttcgaactaaaatattggtccccttaGGCTGGAAAGTTGTTTATATagct
ctctgtaattcgaatctttttctaattcgaataaaatttttgatcccttg
aagatcgaattagagagagtcaacttcAAATGGTTATTGCGATTTATTTG
TTTATGGGTTTCCAAAGAGctgatttttaatttgatttaagGGGAAAATG
GACGGAGAAGAGTTTGATAACGTCAATGAAAACCCAAAATCTGAGCTTGG
TCGATTACTTCAACAACTggacaaagaaatcaaaatggcAGAGAATGATT
CGGAGTTAGAATTCACCGAACGAATCTTAGAAATATTCACGAAGATTGCC
GAGATAAGAGCTTTCACGCATACGGAGGAAACCACTGAACAATGTTTcca
aagatttataaaagatgCTGAAAAATTCGCTGAAATTTACCGCAAGCGCG
GGAGTGAGTCTTTTTACTTCTCTAACATTTTAAGAGTGTGCCGTTGGTCC
ATTAGTggccaccacgctgaagctctcaAGGATTGGTCCGATAGATAATC
GGTGAGAGAAATGGAATTTCACGTGCTAACTATAGCTAAATTATCGATTT
CTACTGCCCTAATAATTATGGAATTTAGAGGTGGGCTTAAACCTACCAAG
TGTCGAAAATTTCCCGacttttaaagttttcttttatcaGATCCAATTTT
TATGCGTTTGCCTTTTCCTATCGCTTCATCCGTAGAGGCTATATTATGGG
AActccaaattaaaattttcatatcaGTTTTAGGATTGGAAGAAGATTCA
AAGAAATCATACTTTTCAATACTCAACTTTTACTTCTTTTTAACCACCAC
CAACAGAGCAATCAGAATCCTTGAAAGAAGCCAATATACTTTATTGGGGG
ACGCGTCAACAAATGTTGTTCGGCAAAGTCCTTTGTGATTGGATAAATCG
TGATAAAGAAACAGAAATGGAGACAATGGACCCGATATTCGGAGTATTAT
TAAATCCAACTGGTGGTATGTTAATATGTTGGAACTCTGgagatagaagt
ttttttttaaatttattttaccCAGGCCAGGGTAAAACTTCAATCTTACT
TGAAAATCTTCAGCCGTAACATCCGACTTTTTTATACATACTAAAAATTG
GTGAATTAAAATgtagagaaaaacaaaacagcacGCACTTGCTTTTATAA
AGATTACCTTTAGGCTTAGAAGGGAGGTTCATTTAGTCTAATTTTAGATA
GAGAttataggaaatatttttcatgttccATTTCAGGCAGAGTTGGCCCT
GGAGACACGGGCTGGATTCATAATAAACTATTCGATGATCTCGGCCCCTT
CGCTTATCATTCAGCTGTTCACGACGCTTTCGGATATTTGAAAATCAATC
ACGATACAGGCCCTGGTTACTCATATTTGAATGGACGAAAAAATGGTGAT
TCGAACCCATTGCGGGGCCAGGTAACGGGTTTAAAGTTTTGGAAAGATGT
TGTTAAAAGGCTCAAGCCTGAAGAGGCTCCTGAAGAAAAATTTATATTGA
TGTGAATGTGTGAAAGGATTTTGGTAGGCCAGTAAAACGAAATGCGAGCA
ACGGATTGTCAATTTGTGAACGTTGGTCAAGTCATAATGCTGATGAATAT
TTTTAATTGATAGGTTCTCATGCTAAGACGTATATGCCTGAATAAAATAA
TTGAacctttttgtaaaatatttaatttgagaatttttaatttttagtat
GTATCCCTTTAAATGTTacttttcttttagttttagaCCCCACCCTTTAA
CCACTTTATTGTTGTTCTAACAGACTCAACTAGGAAGATAATTTTCTAAT
TGTAAGTAATGTAAGTAGAGTCACGTGAGAAACATTTGAAaggttgttct
taaatttctgAATCGGTTGAAACACAAAGTTAGTCCAACAAAGAAATATT
ACCTCGTAACAAATTAACTTGAGTGATTCTTCTTCAGAAATCTCCAACAA
CTTTTTGAAGATGAAAGTCAACCTCTCATAATCGAACGGACTTATCTAAA
AAAAGTATACTCTATCTGTTgaggttttgaaaagttttgaaatccaTCCA
GTAATAAAAATACTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00006427-exon-sc0000067-1491911889:396558..397160 | TCONS_00006427-exon-sc0000067-1491911889:396558..397160 | Clytia hemisphaerica | exon |
| TCONS_00006427-exon-sc0000067-1510915933:396558..397160 | TCONS_00006427-exon-sc0000067-1510915933:396558..397160 | Clytia hemisphaerica | exon |
| TCONS_00006427-exon-sc0000067-1575043694:396558..397160 | TCONS_00006427-exon-sc0000067-1575043694:396558..397160 | Clytia hemisphaerica | exon |
| TCONS_00006427-exon-sc0000067-1491911889:397564..397722 | TCONS_00006427-exon-sc0000067-1491911889:397564..397722 | Clytia hemisphaerica | exon |
| TCONS_00006427-exon-sc0000067-1510915933:397564..397722 | TCONS_00006427-exon-sc0000067-1510915933:397564..397722 | Clytia hemisphaerica | exon |
| TCONS_00006427-exon-sc0000067-1575043694:397564..397722 | TCONS_00006427-exon-sc0000067-1575043694:397564..397722 | Clytia hemisphaerica | exon |
| TCONS_00006427-exon-sc0000067-1491911889:397994..398822 | TCONS_00006427-exon-sc0000067-1491911889:397994..398822 | Clytia hemisphaerica | exon |
| TCONS_00006427-exon-sc0000067-1510915933:397994..398822 | TCONS_00006427-exon-sc0000067-1510915933:397994..398822 | Clytia hemisphaerica | exon |
| TCONS_00006427-exon-sc0000067-1575043694:397994..398822 | TCONS_00006427-exon-sc0000067-1575043694:397994..398822 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000067 | supercontig | sc0000067:396558..398822 + |
Blast
The following BLAST results are available for this feature:
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