TCONS_00006401 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006401
Unique NameTCONS_00006401
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1831

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006401 ID=TCONS_00006401|Name=TCONS_00006401|organism=Clytia hemisphaerica|type=transcript|length=1831bp
TATCATCCTGTGGTTCTctcttcaaaaatcttttttacctTCCAGTTCCA
ATTGAGATCATTGACAAAGATGACGACATGGTAAACCTTCGCACTTCGTC
ACCACAAGTGGAAAATTAAGCTAAATCAGATTTCCAATATATGTCGGATA
CAATGTTCTTCTTGGTCTTCTAAATTTTGACGACTATCATGGGGCTGAGT
CATCAATAAACATGGATGTTACGAAACAATGATTCGCAACCGCCTGTATG
TGGATTCTCGAGatcTGCACTAATATGAATGCCAGACATTGTTATGCGAT
GTTTAAGGGATGTTATCCTGGGTTTTCGGGTCAGATCAGAATGAAATAAA
AGGTTTGGTAATTGTTTCCATATCTATCTAAAATTACCAATATAAGGTAA
TTCTACAGTAAATGGTCTCTAAAAGCTCCTTGTTAGATATTTTGAATAGA
TATCTGGCCGAGGGAAGTTGGCGGGATGTTCCATTCGGTAACTGCGAGGT
TCAAACATCCTCTCTAAATCTTTAGTAAGATTTTTCTGTCTGTAGCGTAG
CCTGTCGTCGCTTATTACGTTTTGTATTTTCCCCGTTTTTTCATTCTATC
AAGTTGCTGGAAATGACtaatggttttgtttttacataagtgttcccgtt
tcatatcagacacatatttcatatcgggacagtgtcttcctattgttatg
ttatgctgatataagcaaaaaatgtttttcttttcctctttctgatcaat
cttgctccacatccttgTCAATCCAATGCGAAAAAGCTTGGAAATTagaa
ttgacgagtaagcaaacgatatcactcttatttaagaacaaaacctttaa
cttgtGAAAGCTCAATTGcgtaaaaatgtaaatataaaagttaatgaTAG
ACTCTATTTAACGCAGGTATCTTTAGCTGGTTATATATGCTTTTCTTAAA
AAGTAGTTAAAACGGTAGACTTGTTTGCGGTTAAAAAACTTTCGCAGGGA
AAGCTCCCTtttctgaatttaaaaaatatatccaaGAATATTTTGCACCG
TTTGAAAGAGAGCAATAAAGGTCTTGAAAAAGTAGTGTAGCTAAACTTTT
GCTTTAAACTAAGAGGACGAGGTAAAATCTGCAATAATAACGTGAAAGGT
ATTTGATGAACACTAGAACCTTACTATTGCCTTATTTAGTAAAGATTTTA
TTATATTGTGTCggttttcttttgtattttctatcaaaatctGATGTGAT
ATGTCAATCAAAGAATTTTATCTTTATATAGTACTGACCAGAAACACAAC
CAAAATATACAAAAGAGTTTCGTAGGGAAAACTCCCTTATCGCTTACAAA
ATGGTACAACTTGGTCACGTGAACACGCCTGTCAGTAACTCGGTGAGAAT
TATTTAACGAGATCAAAACAGTACTCAAACCATGAAAAAAGTCTTGTTTT
TCAGAAACGAGGGcgaattttattgtttactgCTGAAGTATTCATTGCGG
CTTCTCAAAGCCTTAGTCTCTTTCCTTTAGAATAATTTTGATAATAAATC
AGTTGTGGCTTGGATGGGATAATCCGGGAAAAGGAGAAAATTCTAATATA
GAAAGCTGCTAATCTGTTATGGGGGCGATCAGTTTCAATCGGATGTTATA
AGCCAAATACTAAAATGAATTGACCTCTATGTAAAATTTAATAttgcata
cacgctttttttataagaatggtgtaaatccatttcatcatggatattct
tagcctggatatccagaccgtaaactatttcaccgtctagtttttttata
atcttgtctcaggtttacggtctggttcaaG
Run BLAST on NCBI

transcript from alignment at sc0000067:222600..225414+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006401 ID=TCONS_00006401|Name=TCONS_00006401|organism=Clytia hemisphaerica|type=transcript|length=2815bp|location=Sequence derived from alignment at sc0000067:222600..225414+ (Clytia hemisphaerica)
TATCATCCTGTGGTTCTctcttcaaaaatcttttttacctTCCAGTTCCA
ATTGAGATCATTGACAAAGATGACGACATGGTAAACCTTCGCACTTCGTC
ACCACAAGTGGAAAATTAAGCTAAATCAGATTTCCAATATATGGTAACTG
ATCAAATTTGGTCACTGTTAAGAGGCATCTAGGCGACTAGGggataacac
tgtgaaaatggGTATTTTTATGGCATGATCGTATGGTTTCatattatttt
gtttaaaatttggaGAGCTTTTCAATCAGTGTCTATTTGCTATAATCTGT
TGATAAACCGTTCTCTACAATTACAGAACACCCTAAGTATTCGTTACATT
ATATGCTCTTTATAATCtctgtttttgatttttgttgatttgtCTTCCAG
TCGGATACAATGTTCTTCTTGGTCTTCTAAATTTTGACGACTATCATGGG
GCTGAGTCATCAATAAACATGGATGTTACGAAACAATGATTCGCAACCGC
CTGTATGTGGATTCTCGAGgtaaattaattttattttttcatatttttcg
tTATGAAAGCTTGGTACTACTATTTATGAATAAGTAATACTGCCTTTAAC
GTAGCGTTATGATAAGTCAACTTTTATGGCCGTGAGTCGAGAGTCGGGAC
TGTAAGAAATATCTTCAATGTGCAAGTCCTCTCTTTAAACAAATCGACTG
CAAACAAACTGCACtgttttttaattcattttagATTTTAGGTTTGCCAA
CAAAAGGTACGTACGGTCAAAAATTGGCTTCAAATACCCTTAATGTCCTA
TTTGGTCTTTTTGGCTAAAAATCATGTTTTTCTTTAGACGATATTATCGT
CTGtcacagtgatagtaaaggcggaaaAATATCgtggtatggcgttatgg
cggtatacggaaaataAATCGGCGGgagactggcaaactctaccgactgt
aaactcttttcggcaaaaaacccgtttgcgatctttcttcggctttggac
ttaattcttagatagtgatttgtcttagactatagcatagtctagttTTT
CTTGGACTGAAATATCTAGGCTTGTACAAATCTTAAATCCCACATTTAGG
CTCCAAATCTACTAGGGAATTGGTGTTGAAGATTTCATGGTGCTAAtata
aacaacaacaaaaattacgTAAAAAATTCTAGGGGTGcagtttttctgaa
aagaagGGCGTGTATTTAACCtaattaatactttctttatttttagatcT
GCACTAATATGAATGCCAGACATTGTTATGCGATGTTTAAGGGATGTTAT
CCTGGGTTTTCGGGTCAGATCAGAATGAAATAAAAGGTTTGGTAATTGTT
TCCATATCTATCTAAAATTACCAATATAAGGTAATTCTACAGTAAATGGT
CTCTAAAAGCTCCTTGTTAGATATTTTGAATAGATATCTGGCCGAGGGAA
GTTGGCGGGATGTTCCATTCGGTAACTGCGAGGTTCAAACATCCTCTCTA
AATCTTTAGTAAGATTTTTCTGTCTGTAGCGTAGCCTGTCGTCGCTTATT
ACGTTTTGTATTTTCCCCGTTTTTTCATTCTATCAAGTTGCTGGAAATGA
Ctaatggttttgtttttacataagtgttcccgtttcatatcagacacata
tttcatatcgggacagtgtcttcctattgttatgttatgctgatataagc
aaaaaatgtttttcttttcctctttctgatcaatcttgctccacatcctt
gTCAATCCAATGCGAAAAAGCTTGGAAATTagaattgacgagtaagcaaa
cgatatcactcttatttaagaacaaaacctttaacttgtGAAAGCTCAAT
TGcgtaaaaatgtaaatataaaagttaatgaTAGACTCTATTTAACGCAG
GTATCTTTAGCTGGTTATATATGCTTTTCTTAAAAAGTAGTTAAAACGGT
AGACTTGTTTGCGGTTAAAAAACTTTCGCAGGGAAAGCTCCCTtttctga
atttaaaaaatatatccaaGAATATTTTGCACCGTTTGAAAGAGAGCAAT
AAAGGTCTTGAAAAAGTAGTGTAGCTAAACTTTTGCTTTAAACTAAGAGG
ACGAGGTAAAATCTGCAATAATAACGTGAAAGGTATTTGATGAACACTAG
AACCTTACTATTGCCTTATTTAGTAAAGATTTTATTATATTGTGTCggtt
ttcttttgtattttctatcaaaatctGATGTGATATGTCAATCAAAGAAT
TTTATCTTTATATAGTACTGACCAGAAACACAACCAAAATATACAAAAGA
GTTTCGTAGGGAAAACTCCCTTATCGCTTACAAAATGGTACAACTTGGTC
ACGTGAACACGCCTGTCAGTAACTCGGTGAGAATTATTTAACGAGATCAA
AACAGTACTCAAACCATGAAAAAAGTCTTGTTTTTCAGAAACGAGGGcga
attttattgtttactgCTGAAGTATTCATTGCGGCTTCTCAAAGCCTTAG
TCTCTTTCCTTTAGAATAATTTTGATAATAAATCAGTTGTGGCTTGGATG
GGATAATCCGGGAAAAGGAGAAAATTCTAATATAGAAAGCTGCTAATCTG
TTATGGGGGCGATCAGTTTCAATCGGATGTTATAAGCCAAATACTAAAAT
GAATTGACCTCTATGTAAAATTTAATAttgcatacacgctttttttataa
gaatggtgtaaatccatttcatcatggatattcttagcctggatatccag
accgtaaactatttcaccgtctagtttttttataatcttgtctcaggttt
acggtctggttcaaG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003656XLOC_003656Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006401-exon-sc0000067-1491911889:222600..222742TCONS_00006401-exon-sc0000067-1491911889:222600..222742Clytia hemisphaericaexon
TCONS_00006401-exon-sc0000067-1510915933:222600..222742TCONS_00006401-exon-sc0000067-1510915933:222600..222742Clytia hemisphaericaexon
TCONS_00006401-exon-sc0000067-1575043694:222600..222742TCONS_00006401-exon-sc0000067-1575043694:222600..222742Clytia hemisphaericaexon
TCONS_00006401-exon-sc0000067-1491911889:223000..223118TCONS_00006401-exon-sc0000067-1491911889:223000..223118Clytia hemisphaericaexon
TCONS_00006401-exon-sc0000067-1510915933:223000..223118TCONS_00006401-exon-sc0000067-1510915933:223000..223118Clytia hemisphaericaexon
TCONS_00006401-exon-sc0000067-1575043694:223000..223118TCONS_00006401-exon-sc0000067-1575043694:223000..223118Clytia hemisphaericaexon
TCONS_00006401-exon-sc0000067-1491911889:223846..225414TCONS_00006401-exon-sc0000067-1491911889:223846..225414Clytia hemisphaericaexon
TCONS_00006401-exon-sc0000067-1510915933:223846..225414TCONS_00006401-exon-sc0000067-1510915933:223846..225414Clytia hemisphaericaexon
TCONS_00006401-exon-sc0000067-1575043694:223846..225414TCONS_00006401-exon-sc0000067-1575043694:223846..225414Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000067supercontigsc0000067:222600..225414 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.606982	0.745381	0.842432	1.25439	0.497361	0.331158	0.915751	0.913882	0.698518	0.85508	1.48253	0.884025	1.38212	1.20873	0.825841	1.05848	1.12235	1.34185	0.549236	1.53584	1.29333	1.17988	0.565716	0.4462	0.450117	0.702238	1.25282	1.90975	1.07668	1.11462
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00006401 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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