TCONS_00006350 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006350
Unique NameTCONS_00006350
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length540

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006350 ID=TCONS_00006350|Name=TCONS_00006350|organism=Clytia hemisphaerica|type=transcript|length=540bp
GGCGAATTAGACTATAATTATACCAACCTTCTTTCTAAATCGGTTCTTTG
GAGTACTTTGGTCCTGATATTCTTTGTTTTCTAGGGTTTCCATAAGCTGA
AGAGGTACAACAAAAATTTATCATGTTTAGGACACCTTTGTCTGTTAGAA
CAACATGCACAAGTATTTGTCTAAAATAGCAGTCAGTTTAGCCTGAGATT
AATACTTAGTTTATGAATATCAAAAAGGatccaaaattaataaaataaat
tagtaAATTCAGACCTGATCAGTAGTGGACTCAAAGGCCATACTTGGAAC
GAAACCATCATCTACTGTCTCATGAGTAAAATTGTTGAAACTCCATTGAA
CCATTTCGTTTAAGTTATCATCACATTCAGTCTCTTCAAAATTAAAGTAC
CCTtgcttcttttcaatattttcattattgtcCTTATTTCCACCACCACT
ACATTTGTGTTTGTCATAGAAGTCTTGTCTTGAGAACTGCCTTTCACATG
TGCTGCATTTCAACTCCTTCTTTAATTTTGCATGTACATT
Run BLAST on NCBI

transcript from alignment at sc0000066:129287..129826

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006350 ID=TCONS_00006350|Name=TCONS_00006350|organism=Clytia hemisphaerica|type=transcript|length=540bp|location=Sequence derived from alignment at sc0000066:129287..129826 (Clytia hemisphaerica)
AATGTACATGCAAAATTAAAGAAGGAGTTGAAATGCAGCACATGTGAAAG
GCAGTTCTCAAGACAAGACTTCTATGACAAACACAAATGTAGTGGTGGTG
GAAATAAGgacaataatgaaaatattgaaaagaagcaAGGGTACTTTAAT
TTTGAAGAGACTGAATGTGATGATAACTTAAACGAAATGGTTCAATGGAG
TTTCAACAATTTTACTCATGAGACAGTAGATGATGGTTTCGTTCCAAGTA
TGGCCTTTGAGTCCACTACTGATCAGGTCTGAATTtactaatttatttta
ttaattttggatCCTTTTTGATATTCATAAACTAAGTATTAATCTCAGGC
TAAACTGACTGCTATTTTAGACAAATACTTGTGCATGTTGTTCTAACAGA
CAAAGGTGTCCTAAACATGATAAATTTTTGTTGTACCTCTTCAGCTTATG
GAAACCCTAGAAAACAAAGAATATCAGGACCAAAGTACTCCAAAGAACCG
ATTTAGAAAGAAGGTTGGTATAATTATAGTCTAATTCGCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003623XLOC_003623Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006350-exon-sc0000066-1491911889:129287..129826TCONS_00006350-exon-sc0000066-1491911889:129287..129826Clytia hemisphaericaexon
TCONS_00006350-exon-sc0000066-1510915933:129287..129826TCONS_00006350-exon-sc0000066-1510915933:129287..129826Clytia hemisphaericaexon
TCONS_00006350-exon-sc0000066-1575043694:129287..129826TCONS_00006350-exon-sc0000066-1575043694:129287..129826Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000066supercontigsc0000066:129287..129826 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.214367	0.313562	0.121359	0.712383	0.289086	0.22844	0.275603	0.129008	0.270964	0.111878	0.108591	0.214151	0.462946	1.03641	0	0.0653146	0	0	0.341815	0	0.103631	0.454929	0	0.223458	1.23075	0.540443	0.14697	0.15685	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00006350 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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