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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006347 ID=TCONS_00006347|Name=TCONS_00006347|organism=Clytia hemisphaerica|type=transcript|length=1614bp
cgaaaagttttttaaaaagaccTGAAAAGACTAACCTCCCTGTACAGGGA
TAAGTACTGGGAATTCCTAAGATTTTATCTTTCATAGATATCATAGCCTT
TGTCAGTTACAATAAAGTTCAGAATTTTATGGTGGAAGTATTAAACAGAC
CATTTTCTACAAGTTTTTAGgaagtttttaacaatttcctcaaaaataaa
aatcacatGGCTTTCACACGTAATCTCCAAGTTTTTAGAGGAACAAATTA
ACAGTCTCCAACTCTTGTCcttttttttttgtacaaaaattctgGTTTCA
CCACCTTCGATATCCATACATGCCatggaaaatgaaaagtgtTGACTCCT
GGAAGTATGAATGTattccttttttttaaaaagcatttacCTTCTTATAT
AAACCATACATCATCTGGGGTATGAAATTCAATCTGGTGtgtcaaatttt
gaagatttgaaacTCTCTGAAAAGATTCTTTAAATATTgttaaaaatcag
gaaaattaaaaaaatcaatcataaaaatattcaaaattaccaCAAATTTC
ACTCTTCTTTGCAGTAGGTTTCATGGAATCCATATCATACACCCCCATCA
TATTTTCCAAGATTTCTCGATTGAGCCATTAAAAACAACGATAAAATTAT
ACTTTATAGTAAGCCTAATTTGTGGCTTTACCATCCAATCAAAATGCATG
gcataaaatatgtttttgctttgaatatcataaaaattatagcatgagtc
tatatacatattacaatttgaCTCTTCGCTGCAGCCGCCATGTTGTTGTT
CCTTCTCCGATTCTTGGGTAATATCAATTGTTGCGTACGAGTaacgtttg
attggttcgattgattgtaaTATACCCATTGTAAAAACCTGGGCAGCAGC
TTAGTAGTTAAAACCTAGAAAAACAGTacctttgtttgaaaaattaaata
acacTTACATTTACTTTATGATGTTCTGGAAACCTTTCTAATAGGCCCTT
TTCAAAGTCATAATTCTTTTCCAGCTGTGTAACTGTAATGTCCCTGACGC
AGCGTTGACACAGGTTAAGCTTATTTTTTTATCCTGCTGCTAAGTGAAAA
TATCTATTTCTATTCATAATACTGATACAACTCTCATTGAGAAGATTCTT
GTCATGTTTCTTCTTTGATTCTCTCTGGCAGAGGTAACATTTATCCCCAC
AATTCTCATCCgccattttgcatttttttaattcGAAAATGAAAGTTCAT
ATCAATATTTATATCACATTGTTCACATCGACCTCCGTACCCCACGCAAA
CTCGATAGTTCGAGTAAACTCGCCAAATAGCACGAGTCGGCCACCATAAG
AGCCACCGTAGCGGGAAACCAATCCATACactattaagcagacctatagg
aagtataggtctgcgaatcagactaatTTCGCAGTAGTCCAGAACAAGTA
TGAACGGCGTACCCAATTGGTCTATATACTCATACCACTCTCGGGCTATA
CAACCTACGGGTCTTTTTTTTCTGATATacgggtctgtaaaatatcaaac
ACTCCCTGTCGTCTGAAAGAAAAGGTGAATCTATgttacttttttatcat
ttttccgGTCAGTG Run BLAST on NCBI transcript from alignment at sc0000066:119093..120706 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00006347 ID=TCONS_00006347|Name=TCONS_00006347|organism=Clytia hemisphaerica|type=transcript|length=1614bp|location=Sequence derived from alignment at sc0000066:119093..120706 (Clytia hemisphaerica)
CACTGACcggaaaaatgataaaaaagtaacATAGATTCACCTTTTCTTTC
AGACGACAGGGAGTgtttgatattttacagacccgtATATCAGAAAAAAA
AGACCCGTAGGTTGTATAGCCCGAGAGTGGTATGAGTATATAGACCAATT
GGGTACGCCGTTCATACTTGTTCTGGACTACTGCGAAattagtctgattc
gcagacctatacttcctataggtctgcttaatagtGTATGGATTGGTTTC
CCGCTACGGTGGCTCTTATGGTGGCCGACTCGTGCTATTTGGCGAGTTTA
CTCGAACTATCGAGTTTGCGTGGGGTACGGAGGTCGATGTGAACAATGTG
ATATAAATATTGATATGAACTTTCATTTTCgaattaaaaaaatgcaaaat
ggcGGATGAGAATTGTGGGGATAAATGTTACCTCTGCCAGAGAGAATCAA
AGAAGAAACATGACAAGAATCTTCTCAATGAGAGTTGTATCAGTATTATG
AATAGAAATAGATATTTTCACTTAGCAGCAGGATAAAAAAATAAGCTTAA
CCTGTGTCAACGCTGCGTCAGGGACATTACAGTTACACAGCTGGAAAAGA
ATTATGACTTTGAAAAGGGCCTATTAGAAAGGTTTCCAGAACATCATAAA
GTAAATGTAAgtgttatttaatttttcaaacaaaggtACTGTTTTTCTAG
GTTTTAACTACTAAGCTGCTGCCCAGGTTTTTACAATGGGTATAttacaa
tcaatcgaaccaatcaaacgttACTCGTACGCAACAATTGATATTACCCA
AGAATCGGAGAAGGAACAACAACATGGCGGCTGCAGCGAAGAGtcaaatt
gtaatatgtatatagactcatgctataatttttatgatattcaaagcaaa
aacatattttatgcCATGCATTTTGATTGGATGGTAAAGCCACAAATTAG
GCTTACTATAAAGTATAATTTTATCGTTGTTTTTAATGGCTCAATCGAGA
AATCTTGGAAAATATGATGGGGGTGTATGATATGGATTCCATGAAACCTA
CTGCAAAGAAGAGTGAAATTTGtggtaattttgaatatttttatgattga
tttttttaattttcctgatttttaacAATATTTAAAGAATCTTTTCAGAG
AgtttcaaatcttcaaaatttgacaCACCAGATTGAATTTCATACCCCAG
ATGATGTATGGTTTATATAAGAAGgtaaatgctttttaaaaaaaaggaat
ACATTCATACTTCCAGGAGTCAacacttttcattttccatGGCATGTATG
GATATCGAAGGTGGTGAAACcagaatttttgtacaaaaaaaaaagGACAA
GAGTTGGAGACTGTTAATTTGTTCCTCTAAAAACTTGGAGATTACGTGTG
AAAGCCatgtgatttttatttttgaggaaattgttaaaaacttcCTAAAA
ACTTGTAGAAAATGGTCTGTTTAATACTTCCACCATAAAATTCTGAACTT
TATTGTAACTGACAAAGGCTATGATATCTATGAAAGATAAAATCTTAGGA
ATTCCCAGTACTTATCCCTGTACAGGGAGGTTAGTCTTTTCAggtctttt
taaaaaacttttcg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00006347-exon-sc0000066-1491911889:119093..120706 | TCONS_00006347-exon-sc0000066-1491911889:119093..120706 | Clytia hemisphaerica | exon |
| TCONS_00006347-exon-sc0000066-1510915933:119093..120706 | TCONS_00006347-exon-sc0000066-1510915933:119093..120706 | Clytia hemisphaerica | exon |
| TCONS_00006347-exon-sc0000066-1575043694:119093..120706 | TCONS_00006347-exon-sc0000066-1575043694:119093..120706 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000066 | supercontig | sc0000066:119093..120706 . |
Blast
The following BLAST results are available for this feature:
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