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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006341 ID=TCONS_00006341|Name=TCONS_00006341|organism=Clytia hemisphaerica|type=transcript|length=1206bp
TCTTTGGAATTTTGTCAAATAGCTTCACAACTTTTTTCTGTAAACGTTCT
TTGACAAATTTGCAGTATGCTGCCTCCTCGCcctttaataaaaaataaat
aatgtcGTACCTGAAGGTATTATGATAGACGAAGGGTACTAGGGTATTTA
AAATATTCTATAAGAGTATTTTATATGAAATGAGGCGAGGTAAAACGATT
TAAAGAATAATTGATACCTTTTTGACACATGTCAACAGAAATGAAGATAA
CTCGGCTTCAAGAGTAGCACCGGTTGCAAGGTTTCTTATTGATTTCAACT
CGAGATCAAAAGGATTGCCACGACTGTTTCACTTTTCTTGGTGGAGAACT
CGTGATGTAATGAATATTCATCTTCCTCATTAAcgccggaaaattttcga
agcaaATTGGAGTGGTTGGACTTTTCGTGCTTTATCAGATCCCATTTACA
TACTTCATTTCGTCTCTTTATACCAATTATTCCGGATGAACTTTTGGCTT
GTTTGTTGTATTGTGATTCCAACGCTTGATCCATGGGTACTGCACTGGCT
TTGCGGTTTGATAGTTTTGCAACAAAACCACCCTGAACGAAATCTTCATG
AATTAGTGGAACTTTGGTGGCATGAGTTAGACTGTCTTCGAAATAAATAG
GCAAACAACGTTTGTAATTTGTGCGGTCGAATGCAAACACAAGTGGTATT
GCACGTTATACGGCGGAAAGTTCTTCTTCCAGTGCTTTATCAGATCCCAT
TTACATACTTCATTTCGTCTCTTTATACCAATTATTCCGGATGAACTTTT
GGCTTGTTTGTTGTATTGTGATTCCAACGCTTGATCCATGGGTACTGCAC
TGGCTTTGAGGTTTGATAGTTTTGCAACAAAACCACCCTGAACGAAATCT
TCATGAATTAGTGGAACTTTGGTGGCATGAGTTAGACTGTCTTCGAAATA
GATAGGCAAACAACGTTTGTAATTTGAACGGTCGAATGCAAACACAAGTA
TGGTATTGCACGTTATACGGCGGAAAGTTCTTCTTCCAGTTTCCTTCTCG
ATGGGATCGCTTAAGGTCACGTAAAGCTGGGTAGATGGTGCTGAGAAAGG
TATTCCAAAGAGCAAACTGATGGCTACTTTGTGTACCATTGGATTGGAAG
GTTTCAAACTCTTTCGAGGATGCTTCAACTTCAACTTTCCATCTTTCTTG
caaaac Run BLAST on NCBI protein sequence of TCONS_00006341-protein >TCONS_00006341-protein ID=TCONS_00006341-protein|Name=TCONS_00006341-protein|organism=Clytia hemisphaerica|type=polypeptide|length=192bp
FCKKDGKLKLKHPRKSLKPSNPMVHKVAISLLFGIPFSAPSTQLYVTLSD
PIEKETGRRTFRRITCNTILVFAFDRSNYKRCLPIYFEDSLTHATKVPLI
HEDFVQGGFVAKLSNLKASAVPMDQALESQYNKQAKSSSGIIGIKRRNEV
CKWDLIKHWKKNFPPYNVQYHLCLHSTAQITNVVCLFISKTV Run BLAST on NCBI transcript from alignment at sc0000066:84587..85792 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00006341 ID=TCONS_00006341|Name=TCONS_00006341|organism=Clytia hemisphaerica|type=transcript|length=1206bp|location=Sequence derived from alignment at sc0000066:84587..85792 (Clytia hemisphaerica)
gttttgCAAGAAAGATGGAAAGTTGAAGTTGAAGCATCCTCGAAAGAGTT
TGAAACCTTCCAATCCAATGGTACACAAAGTAGCCATCAGTTTGCTCTTT
GGAATACCTTTCTCAGCACCATCTACCCAGCTTTACGTGACCTTAAGCGA
TCCCATCGAGAAGGAAACTGGAAGAAGAACTTTCCGCCGTATAACGTGCA
ATACCATACTTGTGTTTGCATTCGACCGTTCAAATTACAAACGTTGTTTG
CCTATCTATTTCGAAGACAGTCTAACTCATGCCACCAAAGTTCCACTAAT
TCATGAAGATTTCGTTCAGGGTGGTTTTGTTGCAAAACTATCAAACCTCA
AAGCCAGTGCAGTACCCATGGATCAAGCGTTGGAATCACAATACAACAAA
CAAGCCAAAAGTTCATCCGGAATAATTGGTATAAAGAGACGAAATGAAGT
ATGTAAATGGGATCTGATAAAGCACTGGAAGAAGAACTTTCCGCCGTATA
ACGTGCAATACCACTTGTGTTTGCATTCGACCGCACAAATTACAAACGTT
GTTTGCCTATTTATTTCGAAGACAGTCTAACTCATGCCACCAAAGTTCCA
CTAATTCATGAAGATTTCGTTCAGGGTGGTTTTGTTGCAAAACTATCAAA
CCGCAAAGCCAGTGCAGTACCCATGGATCAAGCGTTGGAATCACAATACA
ACAAACAAGCCAAAAGTTCATCCGGAATAATTGGTATAAAGAGACGAAAT
GAAGTATGTAAATGGGATCTGATAAAGCACGAAAAGTCCAACCACTCCAA
TttgcttcgaaaattttccggcgTTAATGAGGAAGATGAATATTCATTAC
ATCACGAGTTCTCCACCAAGAAAAGTGAAACAGTCGTGGCAATCCTTTTG
ATCTCGAGTTGAAATCAATAAGAAACCTTGCAACCGGTGCTACTCTTGAA
GCCGAGTTATCTTCATTTCTGTTGACATGTGTCAAAAAGGTATCAATTAT
TCTTTAAATCGTTTTACCTCGCCTCATTTCATATAAAATACTCTTATAGA
ATATTTTAAATACCCTAGTACCCTTCGTCTATCATAATACCTTCAGGTAC
gacattatttattttttattaaaggGCGAGGAGGCAGCATACTGCAAATT
TGTCAAAGAACGTTTACAGAAAAAAGTTGTGAAGCTATTTGACAAAATTC
CAAAGA Coding sequence (CDS) from alignment at sc0000066:84587..85792 >TCONS_00006341 ID=TCONS_00006341|Name=TCONS_00006341|organism=Clytia hemisphaerica|type=CDS|length=579bp|location=Sequence derived from alignment at sc0000066:84587..85792 (Clytia hemisphaerica)
ttttgCAAGAAAGATGGAAAGTTGAAGTTGAAGCATCCTCGAAAGAGTTT
GAAACCTTCCAATCCAATGGTACACAAAGTAGCCATCAGTTTGCTCTTTG
GAATACCTTTCTCAGCACCATCTACCCAGCTTTACGTGACCTTAAGCGAT
CCCATCGAGAAGGAAACTGGAAGAAGAACTTTCCGCCGTATAACGTGCAA
TACCATACTTGTGTTTGCATTCGACCGTTCAAATTACAAACGTTGTTTGC
CTATCTATTTCGAAGACAGTCTAACTCATGCCACCAAAGTTCCACTAATT
CATGAAGATTTCGTTCAGGGTGGTTTTGTTGCAAAACTATCAAACCTCAA
AGCCAGTGCAGTACCCATGGATCAAGCGTTGGAATCACAATACAACAAAC
AAGCCAAAAGTTCATCCGGAATAATTGGTATAAAGAGACGAAATGAAGTA
TGTAAATGGGATCTGATAAAGCACTGGAAGAAGAACTTTCCGCCGTATAA
CGTGCAATACCACTTGTGTTTGCATTCGACCGCACAAATTACAAACGTTG
TTTGCCTATTTATTTCGAAGACAGTCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00006341-exon-sc0000066-1491911889:84587..85792 | TCONS_00006341-exon-sc0000066-1491911889:84587..85792 | Clytia hemisphaerica | exon |
| TCONS_00006341-exon-sc0000066-1510915933:84587..85792 | TCONS_00006341-exon-sc0000066-1510915933:84587..85792 | Clytia hemisphaerica | exon |
| TCONS_00006341-exon-sc0000066-1575043694:84587..85792 | TCONS_00006341-exon-sc0000066-1575043694:84587..85792 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000066 | supercontig | sc0000066:84587..85792 . |
Blast
The following BLAST results are available for this feature:
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