TCONS_00006180 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006180
Unique NameTCONS_00006180
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length502

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006180 ID=TCONS_00006180|Name=TCONS_00006180|organism=Clytia hemisphaerica|type=transcript|length=502bp
AGCGTTTTGCTATGatctctttctttttttaaattgaaatctGGTCTTCA
ATTAATGCTGTCAGTGGGGCAATGACCAGCGAAATTGTGACCAATCTTGT
TGATGAACCACCCTCAAGAGGTGGAAGTTTAGACAAAAAGAATGGCAAGC
cttgaaaaagaagacttttGCCATTTCCTGTcggctgaccaatgaaaaaa
tcCTGTTTTGGATTtgcagcaaaaatttcaaaaaacttaagTTGATACTC
CCTCAAAGAAGGAAGACCAAACTTAAGCTTAATAGCTTCAAAAGCCTCAG
AAAATTGTACATCCACAGCAGCCATTTTTCTTCGTCTCTTTCTATCGTCA
TTTGAGAGATGTTTTGTTTTCTAAATCCGAAAACATATTCCCGCTCAAAA
CGTCCAAAAGCACTGACCTGACTTCACGAAATTTTGCtctgttttttcaa
aatcccGCTGACCTCTCTCAGAGGTCAGTCAGGCAAAATCGTTTGAGTGA
AG
Run BLAST on NCBI

transcript from alignment at sc0000063:51193..51694

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006180 ID=TCONS_00006180|Name=TCONS_00006180|organism=Clytia hemisphaerica|type=transcript|length=502bp|location=Sequence derived from alignment at sc0000063:51193..51694 (Clytia hemisphaerica)
CTTCACTCAAACGATTTTGCCTGACTGACCTCTGAGAGAGGTCAGCggga
ttttgaaaaaacagaGCAAAATTTCGTGAAGTCAGGTCAGTGCTTTTGGA
CGTTTTGAGCGGGAATATGTTTTCGGATTTAGAAAACAAAACATCTCTCA
AATGACGATAGAAAGAGACGAAGAAAAATGGCTGCTGTGGATGTACAATT
TTCTGAGGCTTTTGAAGCTATTAAGCTTAAGTTTGGTCTTCCTTCTTTGA
GGGAGTATCAActtaagttttttgaaatttttgctgcaAATCCAAAACAG
gattttttcattggtcagccgACAGGAAATGGCaaaagtcttctttttca
agGCTTGCCATTCTTTTTGTCTAAACTTCCACCTCTTGAGGGTGGTTCAT
CAACAAGATTGGTCACAATTTCGCTGGTCATTGCCCCACTGACAGCATTA
ATTGAAGACCagatttcaatttaaaaaaagaaagagatCATAGCAAAACG
CT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003526XLOC_003526Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006180-exon-sc0000063-1491911889:51193..51694TCONS_00006180-exon-sc0000063-1491911889:51193..51694Clytia hemisphaericaexon
TCONS_00006180-exon-sc0000063-1510915933:51193..51694TCONS_00006180-exon-sc0000063-1510915933:51193..51694Clytia hemisphaericaexon
TCONS_00006180-exon-sc0000063-1575043694:51193..51694TCONS_00006180-exon-sc0000063-1575043694:51193..51694Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000063supercontigsc0000063:51193..51694 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.335187	0	0.150755	0	0	0.23946	0.199832	0.27793	0.784749	0.521204	0	0.373646	0.25401	0.17234	0	0	1.04157	1.40184	0.128715	0.140433	1.93471	1.15327	0	0.88356	0	0.281535	1.3814	0.322515	0	0.276333
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00006180 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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