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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006166 ID=TCONS_00006166|Name=TCONS_00006166|organism=Clytia hemisphaerica|type=transcript|length=4419bpRun BLAST on NCBI protein sequence of TCONS_00006166-protein >TCONS_00006166-protein ID=TCONS_00006166-protein|Name=TCONS_00006166-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1008bp MVTYQNYTNGQIILYGDVCFQSWLLVPGQLLWKDWVQGCFYVCAILFLFVRun BLAST on NCBI transcript from alignment at sc0000063:557393..576763- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00006166 ID=TCONS_00006166|Name=TCONS_00006166|organism=Clytia hemisphaerica|type=transcript|length=19371bp|location=Sequence derived from alignment at sc0000063:557393..576763- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000063:557393..576763- >TCONS_00006166 ID=TCONS_00006166|Name=TCONS_00006166|organism=Clytia hemisphaerica|type=CDS|length=57513bp|location=Sequence derived from alignment at sc0000063:557393..576763- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00006166 vs. Swiss-Prot (Human)
Match: NAC3 (Sodium/calcium exchanger 3 OS=Homo sapiens GN=SLC8A3 PE=1 SV=2) HSP 1 Score: 193.741 bits (491), Expect = 3.530e-50 Identity = 165/511 (32.29%), Postives = 239/511 (46.77%), Query Frame = 3
Query: 1794 TREGNAKYQKDFVASAGTLVFKETEYKKTIEIQLTD-----------------RSKQERTTSSTSSDFYIVLKDPCHDSTLGDPSIAHVSIIDDNEPGEFLFQNATAHVQYRLCNVAMVTTTVVRIRGSDGPITVFYRTINGTAIGGDEIDLNKQTCDYEFVEKGMLHFENGETSKNIMIKT--NPKADKSRTFIIALYHVTGSAKIGHRCAAVVSLSSENDEIVDQITSLTENEE-----------------ESVLTRKQEF----------------------RKQIKESMTLDED-------------PSIIDMILHVLCFFWKVAFAFIPPRSVWGGWASFIVSXXXXXXXXXXXEQFAKLLGCVIGLHVSVTGITLVALGTSMPDTFASKTAALQDDSADAAIGNITGSNSVNVFLGLGLPWVIKATYLYSKNQKLEIQGENLLFAV-LVXXXXXXXXXXXXXXXXXXXXXXXXXXXCSKFTTGFFMISLWFVFVVCTALQAYGII 3110
T +G+A D+ + GT+V K E +K + + D R ++E+ + L P + L P +A V+I+DD+ G F F+ T HV ++ ++ V+R G+ G + V +RT+ GTA GG E D+E G L F+N ET K I +K + ++ F IAL G K R + + LS + + D+ ++ E E E ++ EF R Q E++T+ PS D ++H L FWKV FA +PP GWA F VS+L++G+L A++ A GC IGL SVT + VA GTS+PDTFASK AALQD ADA+IGN+TGSN+VNVFLG+GL W + A Y + Q+ + L F+V L + +LL RR GGELGG K T + +SLW ++++ L+AY I
Sbjct: 435 TEDGSANAGADYEFTEGTVVLKPGETQKEFSVGIIDDDIFEEDEHFFVRLSNVRIEEEQPEEGMPPAIFNSL--PLPRAVLASPCVATVTILDDDHAGIFTFECDTIHVSE---SIGVMEVKVLRTSGARGTVIVPFRTVEGTAKGGGE--------DFEDT-YGELEFKNDETVKTIRVKIVDEEEYERQENFFIAL----GEPKWMERGISALLLSPD---VTDRKLTMEEEEAKRIAEMGKPVLGEHPKLEVIIEESYEFKTTVDKLIKKTNLALVVGTHSWRDQFMEAITVSAAGDEDEDESGEERLPSCFDYVMHFLTVFWKVLFACVPPTEYCHGWACFAVSILIIGMLTAIIGDLASHFGCTIGLKDSVTAVVFVAFGTSVPDTFASKAAALQDVYADASIGNVTGSNAVNVFLGIGLAWSVAAIYWALQGQEFHVSAGTLAFSVTLFTIFAFVCISVLLYRRRPHLGGELGGPRGCKLATTWLFVSLWLLYILFATLEAYCYI 924 HSP 2 Score: 175.252 bits (443), Expect = 2.703e-44 Identity = 87/195 (44.62%), Postives = 128/195 (65.64%), Query Frame = 3
Query: 222 YVCAILFLFVGIAIVADTFMLSIEMITSKKRIIYTYDRDKNERVEKEVFVWNETIANLTLMALGSSAPEILISVFETLATLSDTEPAESLGLYTIIGSAAYNMIVITAICVMSLPKNTSKRVNEFGVFIITSFWSIFAYLWLIFVIRWWTPNHIELWEAILTLLFFPALVISAWVQDKGCWLYKC--RRSKLNKH 800
Y A++++F+G++I+AD FM SIE+ITS++R + T + E + VWNET++NLTLMALGSSAPEIL+S+ E A LG TI+GSAA+NM +I ICV +P ++++ VF IT+ WSIFAY+WL ++ ++P +++WE +LTL FFP V+ AWV DK YK ++ + +KH
Sbjct: 80 YFVALIYMFLGVSIIADRFMASIEVITSQEREV-TIKKPNGETSTTTIRVWNETVSNLTLMALGSSAPEILLSLIEVCG---HGFIAGDLGPSTIVGSAAFNMFIIIGICVYVIPDGETRKIKHLRVFFITAAWSIFAYIWLYMILAVFSPGVVQVWEGLLTLFFFPVCVLLAWVADKRLLFYKYMHKKYRTDKH 270 The following BLAST results are available for this feature:
BLAST of TCONS_00006166 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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